CX288800

Overview
NameCX288800
Unique NameCX288800
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB1_SUIBO (Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.919e-29
Identity = 58/170 (34.12%), Postives = 94/170 (55.29%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF ++ +AP+ +     +  ++V E+T   F+  +MMA  DPRHG+Y+    ++RG V  K+V   +  ++ K +  FV+W P          PP          V+ AV  + NST++ E+F R+   F  M+ ++AF+HWY  EG
Sbjct:  241 RFPGQLNSDLRKLAVNMVPFPRLHFFMTGFAPLTARGSQQYRAVTVPELTQQMFDAKNMMAASDPRHGRYLTVAAVFRGKVSMKEVEEQMQNVQNKNSAYFVEWIPNNVLSAQCDIPP--------RGVKMAVTFLGNSTAIQELFKRVSDHFTAMFKRKAFLHWYTQEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB1_COLGL (Tubulin beta-1 chain OS=Colletotrichum gloeosporioides GN=TUB1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.919e-29
Identity = 58/170 (34.12%), Postives = 97/170 (57.06%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   NLVP+PR+HF    +AP+ +A  A ++ L VAE+T   F+P ++M+  D R+G+++ C  +YRG V  K +   +  ++ K +  FV+W P   +      PP          +  +   I NST++ ++F R+  +F +M+ ++AF+HWY GEG
Sbjct:  244 RFPGQLNADLRKLAVNLVPFPRLHFFTVGFAPLTTA--AAYQNLGVAELTQQMFDPKNVMSASDFRNGRFLTCSAIYRGKVSTKQIEEQIRGVQAKNSAYFVEWIPNNVQTAHCSIPP--------VGMNASSTFIGNSTAIQDIFRRVGDQFSVMFRRKAFLHWYTGEG 403          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_UNCNE (Tubulin beta chain OS=Uncinula necator PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.034e-28
Identity = 57/170 (33.53%), Postives = 96/170 (56.47%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   ++P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVTVPELTQQMYDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSAYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_MELLI (Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.034e-28
Identity = 58/170 (34.12%), Postives = 99/170 (58.24%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ +     +  ++V E+T+  F+  +MMA  DPRHG+Y+     +RG V  K+V   + ++++K +  FV+W P      +      + P G    ++ +V  I NST++ ++F RI  +F  M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTARGSQQYRAVTVPELTSQMFDAKNMMAASDPRHGRYLTVAAYFRGKVSMKEVEENMLSVQSKNSNYFVEWIPN----NVQTAHCDIAPRG----LKMSVTFIGNSTAIQDLFKRIADQFTAMFRRKAFLHWYTGEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_LEIME (Tubulin beta chain OS=Leishmania mexicana PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.034e-28
Identity = 60/172 (34.88%), Postives = 97/172 (56.40%), Query Frame = 2
Query:    2 RFDGALNVDV-TEFQTNLVPYPRIHFMLSSYAPVIS-AEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+      NLVP+PR+HF +  +AP+ S   + Y + LSVA++T   F+  +MM   DPRHG+Y+    ++RG +  K+V+  +  ++ K +  F++W P   K  I   PP          ++ +V  I N+T + E+F R+  +F  M+ ++ F+HWY GEG
Sbjct:  241 RFPGQLNSDLRNRLAVNLVPFPRLHFFMMGFAPLTSRGSQEYRQGLSVADVTQQMFDAKNMMQAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFIEWIPNNIKSSICDIPP--------KGLKMSVTFIGNNTCIQEMFRRVGEQFTGMFRRKRFLHWYTGEG 404          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_ERYGR (Tubulin beta chain OS=Erysiphe graminis subsp. hordei GN=TUB2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.034e-28
Identity = 58/170 (34.12%), Postives = 95/170 (55.88%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K    FV+W P   +  +   PP          ++ +   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVTVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQQKNVSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_COCHE (Tubulin beta chain OS=Cochliobolus heterostrophus GN=TUB1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.034e-28
Identity = 58/170 (34.12%), Postives = 95/170 (55.88%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   F+P +MMA  D R+G+Y+ C   +RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVTVPELTQQMFDPKNMMAASDFRNGRYLTCSAYFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB2_ERYPI (Tubulin beta-2 chain OS=Erysiphe pisi GN=TUB2 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.034e-28
Identity = 57/170 (33.53%), Postives = 96/170 (56.47%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   ++P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVTVPELTQQMYDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSAYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB2_EMENI (Tubulin beta-2 chain OS=Emericella nidulans GN=tubC PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.034e-28
Identity = 56/170 (32.94%), Postives = 97/170 (57.06%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ S   +    +SV E+T   F+  +MM   + ++G+++ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ A   + NSTSV E+F+R+ ++F  M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRSSSSFRTISVPELTQQMFDSRNMMTAANYQNGRFLTCSTLFRGKVAMKEVEDQMRNMQNKYSSYFVEWIPNNVQTALCSMPP--------KGLKMAATFVGNSTSVQELFNRVSNQFTAMFRRKAFLHWYTGEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_BOTFU (Tubulin beta chain OS=Botryotinia fuckeliana GN=tubA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.351e-28
Identity = 57/170 (33.53%), Postives = 96/170 (56.47%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   ++P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVTVPELTQQMYDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEG 402          
The following BLAST results are available for this feature:
BLAST of CX288800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBB1_SUIBO7.919e-2934.12Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 P... [more]
TBB1_COLGL7.919e-2934.12Tubulin beta-1 chain OS=Colletotrichum gloeosporio... [more]
TBB_UNCNE1.034e-2833.53Tubulin beta chain OS=Uncinula necator PE=3 SV=1[more]
TBB_MELLI1.034e-2834.12Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3... [more]
TBB_LEIME1.034e-2834.88Tubulin beta chain OS=Leishmania mexicana PE=3 SV=... [more]
TBB_ERYGR1.034e-2834.12Tubulin beta chain OS=Erysiphe graminis subsp. hor... [more]
TBB_COCHE1.034e-2834.12Tubulin beta chain OS=Cochliobolus heterostrophus ... [more]
TBB2_ERYPI1.034e-2833.53Tubulin beta-2 chain OS=Erysiphe pisi GN=TUB2 PE=2... [more]
TBB2_EMENI1.034e-2832.94Tubulin beta-2 chain OS=Emericella nidulans GN=tub... [more]
TBB_BOTFU1.351e-2833.53Tubulin beta chain OS=Botryotinia fuckeliana GN=tu... [more]

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Properties
Property NameValue
Genbank descriptionC02004E09SK IF1 Citrus clementina cDNA clone C02004E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288800 ID=CX288800; Name=CX288800; organism=Citrus clementina; type=EST; length=511bp
GAGGTTTGATGGTGCTTTGAATGTGGATGTGACTGAATTCCAAACCAACT
TGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTC
ATCTCAGCTGAGAAGGCCTACCATGAACAACTCTCAGTTGCTGAGATCAC
CAACAGTGCCTTTGAGCCCTCATCTATGATGGCCAAATGTGATCCTCGTC
ATGGCAAGTACATGGCTTGCTGCCTCATGTACCGTGGTGATGTTGTGCCC
AAGGATGTCAATGCAGCTGTTGCTACCATCAAGACCAAGCGTACAATCCA
ATTCGTCGACTGGTGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGC
CACCAACTGTTGTTCCTGGTGGTGACCTTGCCAAGGTGCAAAGGGCTGTT
TGCATGATCTCCAACTCCACCAGTGTGGCAGAGGTGTTCTCTCGCATTGA
CCACAAGTTTGATCTTATGTATGCAAAGCGTGCTTTCGTCCACTGGTATG
TTGGCGAGGGT
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