CX288800

Overview
NameCX288800
Unique NameCX288800
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB1_COLGR (Tubulin beta-1 chain OS=Colletotrichum graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.351e-28
Identity = 63/170 (37.06%), Postives = 93/170 (54.71%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   NLVP+PR+HF    +AP+ S+  A    L +AE+T   F+P ++M   D R G+++ C  M+RG V  K V   +  IK K +  FV+W P   +      PP    G D++        I NST++   F R+  +F LM+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNADLRKLAVNLVPFPRLHFFTVGFAPLTSS--ASFSNLGIAELTQQMFDPKNVMLASDFRDGRFLTCSTMFRGKVSMKQVEEQIQAIKNKNSANFVEWIPNNIQTAHCSVPP---KGLDVSST-----FIGNSTAIQNSFRRVGDQFSLMFRRKAFLHWYTGEG 400          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB1_TRIVI (Tubulin beta-1 chain OS=Trichoderma viride GN=tub1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.764e-28
Identity = 56/170 (32.94%), Postives = 94/170 (55.29%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T    +P +MMA  D R+G+Y+ C  ++RG V  K+V   + T++ K +  FV+W P   +      PP          ++ +   + NST++ E+F R+  +F  M+ ++AF+HWY  EG
Sbjct:  243 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSPGAHSFRAVTVPELTQQMMDPKNMMAASDFRNGRYLTCSTIFRGKVAMKEVEDQMRTVQNKNSAYFVEWIPNNIQTACALSPP--------RGLKISSTFVGNSTAIQEIFRRVGEQFSAMFRRQAFLHWYTSEG 404          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_ASPFU (Tubulin beta chain OS=Aspergillus fumigatus GN=AFUA_7G00250 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.304e-28
Identity = 57/170 (33.53%), Postives = 97/170 (57.06%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ S        +SV E+T   F+  +MM  C+ ++G+++ C  ++RG +  K+V+  + +I TK +  FV+W P   +  +   PP          ++ +   + NSTSV E+F R+  +F  M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAQSFRAMSVPELTQQMFDSRNMMTACNFQNGRFLTCSALFRGKISMKEVDDQMLSIHTKNSGYFVEWIPNNVQTALCSVPP--------KGLKMSATFVGNSTSVQELFQRVATQFTAMFRRKAFLHWYTGEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.009e-28
Identity = 60/170 (35.29%), Postives = 97/170 (57.06%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   NLVP+PR+HF++ S+AP    +    ++LSV+E+T+S F+  +++   DPR G+Y+    ++RG V   +   +V  ++ K +  FV+W P      +   PP   P        +A   ++NST + E+F R   +F LM+ +RAF+HWY GEG
Sbjct:  245 RFPGQLNGDLRKLGMNLVPFPRLHFLMPSFAPFYDPKARTFQRLSVSELTSSLFDKKNLLVASDPRFGRYLTAACIFRGKVSSHEAENSVMQLQRKNSNLFVEWIPDNVSVSLCSVPPVGQP--------QAAVALANSTCMQELFKRNLDQFALMFKRRAFLHWYTGEG 406          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB1_TRIVE (Tubulin beta-1 chain OS=Trichoderma virens PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.009e-28
Identity = 57/170 (33.53%), Postives = 95/170 (55.88%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ S        +SV E+T    +P +MMA  D R+G+Y+ C  ++RG V  K+V   + +I+ K +  FV+W P   +  +   PP          ++ +   + NST++ E+F R+  +F  M+ ++AF+HWY  EG
Sbjct:  241 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSPGAHSFRAVSVPELTQQMLDPKNMMAASDFRNGRYLTCSTIFRGKVAMKEVEDQMRSIQNKNSTYFVEWIPNNIQTALCSIPP--------KGLKISSTFVGNSTAIQEIFRRVGEQFTAMFRRKAFLHWYTSEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: YI016_HUMAN (Putative tubulin beta chain-like protein ENSP00000290377 OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 6.704e-28
Identity = 56/170 (32.94%), Postives = 95/170 (55.88%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+VAE+T   F+  +M A  DPRHG+Y+    +++G +  ++V+  +  I+ K +  F DW P   K  I   PP          ++ +   I N+ ++ E+F+ +  +F  M+ ++AF+HWY GEG
Sbjct:  169 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVAELTQQMFDAKNMRAARDPRHGRYLTAAAIFQGRMPMREVDEQMFNIQDKNSSYFADWFPDNVKTAICDIPP--------RGLKMSASFIGNNAAIQELFTCVSEQFTAMFRRKAFLHWYTGEG 330          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_VENIN (Tubulin beta chain OS=Venturia inaequalis PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.755e-28
Identity = 57/170 (33.53%), Postives = 95/170 (55.88%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   F+P +MMA  D R+G+Y+    ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   + NSTS+ E+F R+  +F  M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVTVPELTQQMFDPKNMMAASDFRNGRYLTSSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_UROFA (Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.143e-27
Identity = 56/170 (32.94%), Postives = 96/170 (56.47%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ +     +  ++V E+T+  F+  +MMA  DPRHG+Y+     +RG V  K+V   + +++ K +  FV+W P      +      + P       + +V  I NST++ ++F R+  +F  M+ ++AF+HWY GEG
Sbjct:  241 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTARGSQQYRAITVPELTSQMFDAKNMMAASDPRHGRYLTVAAYFRGKVSMKEVEENMLSVQNKNSNYFVEWIPN----NVQTAHCDIAPRAH----KMSVTFIGNSTAIQDLFKRVADQFTAMFRRKAFLHWYTGEG 402          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB3_ANEPH (Tubulin beta-3 chain (Fragment) OS=Anemia phyllitidis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.143e-27
Identity = 57/170 (33.53%), Postives = 92/170 (54.12%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   I NS+S+ E+F R       M+ ++AF+HWY  EG
Sbjct:   37 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQLINVQNKNSSYFVEWIPNNVKSSVCDIPP--------VGLKMACTFIGNSSSIQEMFRRDATSLTAMFRRKAFLHWYTWEG 198          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_PLESA (Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.547e-27
Identity = 56/170 (32.94%), Postives = 92/170 (54.12%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +    P+ +     +  ++V E+T   F+  +MMA  DPRHG+Y+    ++RG V  K+V   +  ++ K +  FV+W P          PP           + AV  + NST++ E+F R++ +F  M+ ++AF+HWY  EG
Sbjct:  241 RFPGQLNSDLRKLAVNMVPFPRLHFFMPGVCPLTARGSQQYRAVTVPELTQQMFDAKNMMAASDPRHGRYLTVAAVFRGKVSMKEVEEQMQNVQNKNSAYFVEWIPNNVLTAQCDIPP--------RGCKMAVTFLGNSTAIQELFKRVNDQFAAMFKRKAFLHWYTQEG 402          
The following BLAST results are available for this feature:
BLAST of CX288800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBB1_COLGR1.351e-2837.06Tubulin beta-1 chain OS=Colletotrichum graminicola... [more]
TBB1_TRIVI1.764e-2832.94Tubulin beta-1 chain OS=Trichoderma viride GN=tub1... [more]
TBB_ASPFU2.304e-2833.53Tubulin beta chain OS=Aspergillus fumigatus GN=AFU... [more]
TBB2_SUIBO3.009e-2835.29Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 P... [more]
TBB1_TRIVE3.009e-2833.53Tubulin beta-1 chain OS=Trichoderma virens PE=2 SV... [more]
YI016_HUMAN6.704e-2832.94Putative tubulin beta chain-like protein ENSP00000... [more]
TBB_VENIN8.755e-2833.53Tubulin beta chain OS=Venturia inaequalis PE=3 SV=... [more]
TBB_UROFA1.143e-2732.94Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 ... [more]
TBB3_ANEPH1.143e-2733.53Tubulin beta-3 chain (Fragment) OS=Anemia phylliti... [more]
TBB_PLESA2.547e-2732.94Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC02004E09SK IF1 Citrus clementina cDNA clone C02004E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288800 ID=CX288800; Name=CX288800; organism=Citrus clementina; type=EST; length=511bp
GAGGTTTGATGGTGCTTTGAATGTGGATGTGACTGAATTCCAAACCAACT
TGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTC
ATCTCAGCTGAGAAGGCCTACCATGAACAACTCTCAGTTGCTGAGATCAC
CAACAGTGCCTTTGAGCCCTCATCTATGATGGCCAAATGTGATCCTCGTC
ATGGCAAGTACATGGCTTGCTGCCTCATGTACCGTGGTGATGTTGTGCCC
AAGGATGTCAATGCAGCTGTTGCTACCATCAAGACCAAGCGTACAATCCA
ATTCGTCGACTGGTGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGC
CACCAACTGTTGTTCCTGGTGGTGACCTTGCCAAGGTGCAAAGGGCTGTT
TGCATGATCTCCAACTCCACCAGTGTGGCAGAGGTGTTCTCTCGCATTGA
CCACAAGTTTGATCTTATGTATGCAAAGCGTGCTTTCGTCCACTGGTATG
TTGGCGAGGGT
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