CX288800
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB1_CHOCR (Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 2.547e-27 Identity = 58/170 (34.12%), Postives = 94/170 (55.29%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN D+ + NLVP+PR+HF +AP+ ++ A + LSV E+ F+ ++MMA+ DPR G+Y+ + +RG V K+V + ++TK + FV+W P K + P A + + I N+T++ F R ++F M+ ++AF+HWY EG Sbjct: 243 RFPGQLNADLRKLAVNLVPFPRLHFFAVGHAPLAASNSAGYRSLSVPELAGQMFDRNNMMAEIDPREGRYLTAAVYFRGKVSTKEVEDEMTLMQTKNSAYFVEWIPHNIKTSVCDIP--------AAGEKISSAFIGNTTAIEATFKRFGNQFRSMFRRKAFLHWYKSEG 404
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB4Q_HUMAN (Putative tubulin beta-4q chain OS=Homo sapiens GN=TUBB4Q PE=5 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 3.327e-27 Identity = 58/170 (34.12%), Postives = 94/170 (55.29%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN D+ + N+VP+PR+HF + +AP+ S + L+VAE+T F+ +MMA DPRHG Y+ ++RG + ++V+ + I+ K + F DW P K + PP ++ +V N+T+V E+ R+ +F + ++AF+HWY GEG Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSQGSQQYRALTVAELTQQMFDAKNMMAARDPRHGCYLTAAAIFRGRMPMREVDEQMFNIQDKNSSYFADWLPNNIKTAVCDIPPW--------GLKMSVTFTGNNTAVQEL-KRVSEQFTATFRRKAFLHWYTGEG 401
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_AJECA (Tubulin beta chain OS=Ajellomyces capsulata GN=TUB2 PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 2.817e-26 Identity = 54/170 (31.76%), Postives = 93/170 (54.71%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN D+ + N+VP+PR+HF + +AP+ S ++V E+T ++P +MM D R+G+Y+ ++RG V K+V + ++ K FV+W P + + PP ++ + + NST++ E+F R+ +F M+ ++AF+HWY GEG Sbjct: 242 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAYSFRVVTVPELTQKMYDPKNMMCLLDFRNGRYLTASAIFRGKVSMKEVEDQMRNVQNKNHTYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVENSTAIQELFKRVGDQFTAMFRRKAFLHWYTGEG 403
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_LYTPI (Tubulin beta chain (Fragment) OS=Lytechinus pictus PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 6.493e-23 Identity = 48/141 (34.04%), Postives = 80/141 (56.74%), Query Frame = 2 Query: 89 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 +AP+ S + L+V+E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K + PP ++ + I NST++ E+F RI +F M+ ++AF+HWY GEG Sbjct: 1 FAPLTSRGSQQYRALTVSELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG 133
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 9.376e-22 Identity = 48/170 (28.24%), Postives = 90/170 (52.94%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511 RF G LN + + N+VP+PR+HF++ +AP+++ ++ + +V+E+ F ++++ D R GK + ++RG + P++V+ + ++ K FVDW P K I PP ++ + I N+T++ +F R+ M ++A +HWY GEG Sbjct: 240 RFPGQLNAGLRKIYVNMVPFPRLHFLIPGFAPLVTCKQQQFSKGTVSELVQQIFYSNNLLCAIDLRKGKLLTAAGIFRGRMSPREVDQLMTGVRNKNINNFVDWIPNNIKTAICDIPP--------RGLKMSATFIGNTTAIQTLFQRLLDASMSMLRRKAHLHWYTGEG 401
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 3.016e-20 Identity = 49/167 (29.34%), Postives = 88/167 (52.69%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 502 RF+G+LN+D+ E NLVP+P++H+++SS P+ + + ++ + AF + + DP+H Y+AC LM RG+V D+ + +K ++QFV W G+K + PP ++ ++N+T V F + +F +Y K+A +H Y+ Sbjct: 274 RFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPLYTLTDVNIPPRRLDQMFSDAFSKDHQLLRADPKHSLYLACALMVRGNVQISDLRRNIERLKP--SLQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYL 430
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.939e-20 Identity = 49/167 (29.34%), Postives = 87/167 (52.10%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 502 RF+G+LN+D+ E NLVP+P++H+++SS P+ + + ++ + AF + + DPRH Y+AC L+ RG+V D+ + +K +QFV W G+K + PP ++ ++N+T V F + +F +Y K+A +H Y+ Sbjct: 274 RFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPLYTLADVNIPPRRLDQMFSDAFSKDHQLIQADPRHSLYLACALIVRGNVQISDLRRNIERLKP--ALQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYL 430
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 5.688e-19 Identity = 48/169 (28.40%), Postives = 92/169 (54.44%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP-VISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV--CMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWY 499 R+ G +N D+ +LVP PR HF+++S+ P VI + ++ SV ++ +P ++M C + G Y++ + RGDV P D++ ++ I+ K+ + F+ W P + ++ Q P A V V CM++N +++ +F+RI +D++ + AF++ Y Sbjct: 243 RYPGYMNNDLVGLIASLVPTPRAHFLMTSFTPLVIKGAQRRIQKTSVLDVMRRLLQPKNIMVSCGTKKGVYVSILDIIRGDVDPTDIHKSLQRIREKKIVNFIPWGPASIQVALSKQSP-------YANVPYRVSGCMMANHSNLGNLFARIIRTYDILRKRNAFLNVY 404
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 6.953e-17 Identity = 45/170 (26.47%), Postives = 89/170 (52.35%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGE 508 R+ G +N D+ +L+P P+ HF+++ Y P+ I + + SV ++ +P ++M + GKY++ + +GDV P ++ ++ I+ KR F+DW P + ++ + P + ++ + M++N TSV +FS I ++D + K+AF+ Y E Sbjct: 241 RYPGYMNNDLVGMLASLIPTPKCHFLITGYTPLSIDRQTESVRKTSVLDVMRRLLQPQNIMVSAPTKTGKYISILNIIQGDVDPTQIHNSLQRIREKRMATFIDWGPASIQIALSKKSPYIKSSHKVSGL-----MLANHTSVNHLFSHIIQQYDKVRKKQAFLANYTRE 405
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBG_PLAFO (Tubulin gamma chain OS=Plasmodium falciparum (isolate NF54) GN=G-TUB PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 5.886e-16 Identity = 46/172 (26.74%), Postives = 88/172 (51.16%), Query Frame = 2 Query: 2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVC--MISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGE 508 R+ G++N D+ ++L+ P+ HF+++SY P+ I + ++ +V ++ ++M R G Y++ + RG+ P V+ + I+ ++ + F+ W P + + Q P VV Q VC M++N TS++ +F R +FD +Y +RAF+ Y E Sbjct: 245 RYPGSMNNDMISLISSLIINPKCHFLITSYTPITIDKHISNVQKTTVLDVMKRLLHTKNIMVSAPVRRGMYISILNIIRGETDPTQVHKGLQRIRDRKLVNFIKWNPASIQVTLAKQSPHVVS-------QHKVCGLMMANHTSISTLFERCVTQFDRLYKRRAFLENYKKE 409 The following BLAST results are available for this feature:
BLAST of CX288800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 403
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288800 ID=CX288800; Name=CX288800; organism=Citrus clementina; type=EST; length=511bpback to top |