CX288800

Overview
NameCX288800
Unique NameCX288800
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB1_CHOCR (Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.547e-27
Identity = 58/170 (34.12%), Postives = 94/170 (55.29%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   NLVP+PR+HF    +AP+ ++  A +  LSV E+    F+ ++MMA+ DPR G+Y+   + +RG V  K+V   +  ++TK +  FV+W P   K  +   P         A  + +   I N+T++   F R  ++F  M+ ++AF+HWY  EG
Sbjct:  243 RFPGQLNADLRKLAVNLVPFPRLHFFAVGHAPLAASNSAGYRSLSVPELAGQMFDRNNMMAEIDPREGRYLTAAVYFRGKVSTKEVEDEMTLMQTKNSAYFVEWIPHNIKTSVCDIP--------AAGEKISSAFIGNTTAIEATFKRFGNQFRSMFRRKAFLHWYKSEG 404          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB4Q_HUMAN (Putative tubulin beta-4q chain OS=Homo sapiens GN=TUBB4Q PE=5 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.327e-27
Identity = 58/170 (34.12%), Postives = 94/170 (55.29%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+VAE+T   F+  +MMA  DPRHG Y+    ++RG +  ++V+  +  I+ K +  F DW P   K  +   PP          ++ +V    N+T+V E+  R+  +F   + ++AF+HWY GEG
Sbjct:  241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSQGSQQYRALTVAELTQQMFDAKNMMAARDPRHGCYLTAAAIFRGRMPMREVDEQMFNIQDKNSSYFADWLPNNIKTAVCDIPPW--------GLKMSVTFTGNNTAVQEL-KRVSEQFTATFRRKAFLHWYTGEG 401          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_AJECA (Tubulin beta chain OS=Ajellomyces capsulata GN=TUB2 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.817e-26
Identity = 54/170 (31.76%), Postives = 93/170 (54.71%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   ++P +MM   D R+G+Y+    ++RG V  K+V   +  ++ K    FV+W P   +  +   PP          ++ +   + NST++ E+F R+  +F  M+ ++AF+HWY GEG
Sbjct:  242 RFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAYSFRVVTVPELTQKMYDPKNMMCLLDFRNGRYLTASAIFRGKVSMKEVEDQMRNVQNKNHTYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVENSTAIQELFKRVGDQFTAMFRRKAFLHWYTGEG 403          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBB_LYTPI (Tubulin beta chain (Fragment) OS=Lytechinus pictus PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.493e-23
Identity = 48/141 (34.04%), Postives = 80/141 (56.74%), Query Frame = 2
Query:   89 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            +AP+ S     +  L+V+E+T   F+  +MMA CDPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ +   I NST++ E+F RI  +F  M+ ++AF+HWY GEG
Sbjct:    1 FAPLTSRGSQQYRALTVSELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG 133          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.376e-22
Identity = 48/170 (28.24%), Postives = 90/170 (52.94%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG 511
            RF G LN  + +   N+VP+PR+HF++  +AP+++ ++    + +V+E+    F  ++++   D R GK +    ++RG + P++V+  +  ++ K    FVDW P   K  I   PP          ++ +   I N+T++  +F R+      M  ++A +HWY GEG
Sbjct:  240 RFPGQLNAGLRKIYVNMVPFPRLHFLIPGFAPLVTCKQQQFSKGTVSELVQQIFYSNNLLCAIDLRKGKLLTAAGIFRGRMSPREVDQLMTGVRNKNINNFVDWIPNNIKTAICDIPP--------RGLKMSATFIGNTTAIQTLFQRLLDASMSMLRRKAHLHWYTGEG 401          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.016e-20
Identity = 49/167 (29.34%), Postives = 88/167 (52.69%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 502
            RF+G+LN+D+ E   NLVP+P++H+++SS  P+ +          + ++ + AF     + + DP+H  Y+AC LM RG+V   D+   +  +K   ++QFV W   G+K  +   PP             ++  ++N+T V   F  +  +F  +Y K+A +H Y+
Sbjct:  274 RFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPLYTLTDVNIPPRRLDQMFSDAFSKDHQLLRADPKHSLYLACALMVRGNVQISDLRRNIERLKP--SLQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYL 430          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.939e-20
Identity = 49/167 (29.34%), Postives = 87/167 (52.10%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 502
            RF+G+LN+D+ E   NLVP+P++H+++SS  P+ +          + ++ + AF     + + DPRH  Y+AC L+ RG+V   D+   +  +K    +QFV W   G+K  +   PP             ++  ++N+T V   F  +  +F  +Y K+A +H Y+
Sbjct:  274 RFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPLYTLADVNIPPRRLDQMFSDAFSKDHQLIQADPRHSLYLACALIVRGNVQISDLRRNIERLKP--ALQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYL 430          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.688e-19
Identity = 48/169 (28.40%), Postives = 92/169 (54.44%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP-VISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV--CMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWY 499
            R+ G +N D+     +LVP PR HF+++S+ P VI   +   ++ SV ++     +P ++M  C  + G Y++   + RGDV P D++ ++  I+ K+ + F+ W P   +  ++ Q P        A V   V  CM++N +++  +F+RI   +D++  + AF++ Y
Sbjct:  243 RYPGYMNNDLVGLIASLVPTPRAHFLMTSFTPLVIKGAQRRIQKTSVLDVMRRLLQPKNIMVSCGTKKGVYVSILDIIRGDVDPTDIHKSLQRIREKKIVNFIPWGPASIQVALSKQSP-------YANVPYRVSGCMMANHSNLGNLFARIIRTYDILRKRNAFLNVY 404          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.953e-17
Identity = 45/170 (26.47%), Postives = 89/170 (52.35%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGE 508
            R+ G +N D+     +L+P P+ HF+++ Y P+ I  +     + SV ++     +P ++M     + GKY++   + +GDV P  ++ ++  I+ KR   F+DW P   +  ++ + P +     ++ +     M++N TSV  +FS I  ++D +  K+AF+  Y  E
Sbjct:  241 RYPGYMNNDLVGMLASLIPTPKCHFLITGYTPLSIDRQTESVRKTSVLDVMRRLLQPQNIMVSAPTKTGKYISILNIIQGDVDPTQIHNSLQRIREKRMATFIDWGPASIQIALSKKSPYIKSSHKVSGL-----MLANHTSVNHLFSHIIQQYDKVRKKQAFLANYTRE 405          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBG_PLAFO (Tubulin gamma chain OS=Plasmodium falciparum (isolate NF54) GN=G-TUB PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.886e-16
Identity = 46/172 (26.74%), Postives = 88/172 (51.16%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVC--MISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGE 508
            R+ G++N D+    ++L+  P+ HF+++SY P+ I    +  ++ +V ++        ++M     R G Y++   + RG+  P  V+  +  I+ ++ + F+ W P   +  +  Q P VV        Q  VC  M++N TS++ +F R   +FD +Y +RAF+  Y  E
Sbjct:  245 RYPGSMNNDMISLISSLIINPKCHFLITSYTPITIDKHISNVQKTTVLDVMKRLLHTKNIMVSAPVRRGMYISILNIIRGETDPTQVHKGLQRIRDRKLVNFIKWNPASIQVTLAKQSPHVVS-------QHKVCGLMMANHTSISTLFERCVTQFDRLYKRRAFLENYKKE 409          
The following BLAST results are available for this feature:
BLAST of CX288800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBB1_CHOCR2.547e-2734.12Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB P... [more]
TBB4Q_HUMAN3.327e-2734.12Putative tubulin beta-4q chain OS=Homo sapiens GN=... [more]
TBB_AJECA2.817e-2631.76Tubulin beta chain OS=Ajellomyces capsulata GN=TUB... [more]
TBB_LYTPI6.493e-2334.04Tubulin beta chain (Fragment) OS=Lytechinus pictus... [more]
TBBP_DROME9.376e-2228.24Probable tubulin beta chain CG32396 OS=Drosophila ... [more]
TBE_HUMAN3.016e-2029.34Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBE_MOUSE3.939e-2029.34Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBG_RETFI5.688e-1928.40Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV... [more]
TBG_DICDI6.953e-1726.47Tubulin gamma chain OS=Dictyostelium discoideum GN... [more]
TBG_PLAFO5.886e-1626.74Tubulin gamma chain OS=Plasmodium falciparum (isol... [more]

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Properties
Property NameValue
Genbank descriptionC02004E09SK IF1 Citrus clementina cDNA clone C02004E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288800 ID=CX288800; Name=CX288800; organism=Citrus clementina; type=EST; length=511bp
GAGGTTTGATGGTGCTTTGAATGTGGATGTGACTGAATTCCAAACCAACT
TGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTC
ATCTCAGCTGAGAAGGCCTACCATGAACAACTCTCAGTTGCTGAGATCAC
CAACAGTGCCTTTGAGCCCTCATCTATGATGGCCAAATGTGATCCTCGTC
ATGGCAAGTACATGGCTTGCTGCCTCATGTACCGTGGTGATGTTGTGCCC
AAGGATGTCAATGCAGCTGTTGCTACCATCAAGACCAAGCGTACAATCCA
ATTCGTCGACTGGTGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGC
CACCAACTGTTGTTCCTGGTGGTGACCTTGCCAAGGTGCAAAGGGCTGTT
TGCATGATCTCCAACTCCACCAGTGTGGCAGAGGTGTTCTCTCGCATTGA
CCACAAGTTTGATCTTATGTATGCAAAGCGTGCTTTCGTCCACTGGTATG
TTGGCGAGGGT
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