CX288803

Overview
NameCX288803
Unique NameCX288803
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12304 contig Ccv1_Contig12304:12..538. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288803 vs. ExPASy Swiss-Prot
Match: RL24_METAC (50S ribosomal protein L24P OS=Methanosarcina acetivorans GN=rpl24p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   52 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 351
            VS   RK RKA + AP  +R+  M A LS  L ++Y  RS  V   D V+V+RG +KG EGKV  V      I ++ +   KV+G+ V   +NPS V+IT
Sbjct:    5 VSKQPRKQRKARYAAPLHIRQKFMGARLSEALTKEYGTRSAAVITGDTVKVMRGDFKGTEGKVQSVSLMDGTITVDGVISTKVDGTEVPRPLNPSNVMIT 104          
BLAST of CX288803 vs. ExPASy Swiss-Prot
Match: RL24_METHJ (50S ribosomal protein L24P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.271e-12
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   52 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 351
            +SS  RK RKA + AP  +R  L+ A LS +L+ KY  RS+ V K D V+V+RG + G EG V  V  R   I ++ ++ +K +G+ V   ++PS V+IT
Sbjct:    5 ISSQPRKQRKARYNAPHHMRGSLLHAALSKELQGKYKRRSIRVIKGDTVKVLRGDHAGTEGLVDYVITRDARIVVDGVSVKKADGTEVPRPVDPSNVMIT 104          
BLAST of CX288803 vs. ExPASy Swiss-Prot
Match: RL24_METLZ (50S ribosomal protein L24P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.287e-12
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   49 RVSSSR-RKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 351
            R+SS++ RK RK  + AP   R   + +PL++DLR+KY  RS  V   D V+V+RG +KG EG V  V  +   + +  +  +K NG  V   ++PSK++IT
Sbjct:    3 RISSTQPRKQRKFRYNAPIHTRGAFLHSPLASDLREKYGKRSFRVVTGDTVKVLRGEFKGIEGVVDGVDVKNTKVLVHGVYVKKANGEDVPRPLDPSKIMIT 104          
BLAST of CX288803 vs. ExPASy Swiss-Prot
Match: RL24_METB6 (50S ribosomal protein L24P OS=Methanoregula boonei (strain 6A8) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   55 SSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 351
            SS  RK RKA + APS +R   ++APLS  LR+ Y  +++ V K D V+V RG + G EG V  +  R   I +  ++  KV+G+ V   I+ SKV IT
Sbjct:    6 SSQPRKQRKARYDAPSHMRSKFLNAPLSATLRETYEKKTIRVIKGDTVKVTRGDHVGEEGIVDGIDTRNVKIIVHGVSSTKVDGTEVPRPIDASKVEIT 104          
BLAST of CX288803 vs. ExPASy Swiss-Prot
Match: RL24_HALMA (50S ribosomal protein L24P OS=Haloarcula marismortui GN=rpl24p PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   52 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 351
            +S    K RK+   AP   R   + A LS DLR++Y  R++ V   D V+V+RG + G EG+V+ V   K VIH+E +T EK +G  V   ++ S V +T
Sbjct:    1 MSKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVT 100          
BLAST of CX288803 vs. ExPASy Swiss-Prot
Match: RL24_SULTO (50S ribosomal protein L24P OS=Sulfolobus tokodaii GN=rpl24p PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   52 VSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRG--TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 351
            VS    K R   +  P   R  L++A LS +L+Q+Y ++ + +RK D V+V+RG       EGKVV+V R+   I IE +TR+K +G+ V   I+ SKV+IT
Sbjct:    2 VSHKPSKQRLLLYNLPKHQRHKLLTAKLSKELQQQYGIKRLAIRKGDTVKVMRGDKDVLNFEGKVVEVNRKTGRIAIEGLTRKKADGTPVYRWIHASKVIIT 103          
BLAST of CX288803 vs. ExPASy Swiss-Prot
Match: RL24_METS5 (50S ribosomal protein L24P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.169e-11
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  127 APLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 351
            APLS +L ++Y ++ + +RKDD V+V+RG   G EGKV QV+     I IE +TR+K +G+ V + I+ SKV IT
Sbjct:    8 APLSDELAKEYGMKRIGIRKDDTVRVMRGDNYGFEGKVTQVFPESGRIAIEGLTRKKADGTPVYIKIHASKVEIT 82          
The following BLAST results are available for this feature:
BLAST of CX288803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RL24_METAC5.046e-1342.0050S ribosomal protein L24P OS=Methanosarcina aceti... [more]
RL24_METHJ3.271e-1241.0050S ribosomal protein L24P OS=Methanospirillum hun... [more]
RL24_METLZ7.287e-1239.2250S ribosomal protein L24P OS=Methanocorpusculum l... [more]
RL24_METB61.243e-1141.4150S ribosomal protein L24P OS=Methanoregula boonei... [more]
RL24_HALMA1.243e-1139.0050S ribosomal protein L24P OS=Haloarcula marismort... [more]
RL24_SULTO2.769e-1140.2050S ribosomal protein L24P OS=Sulfolobus tokodaii ... [more]
RL24_METS56.169e-1146.6750S ribosomal protein L24P OS=Metallosphaera sedul... [more]

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Properties
Property NameValue
Genbank descriptionC02004E12SK IF1 Citrus clementina cDNA clone C02004E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288803 ID=CX288803; Name=CX288803; organism=Citrus clementina; type=EST; length=527bp
GTAAAACCCTAGGCCCAGTCCTCCACATCCACCATGAAGTACAACCCCAG
GGTGTCATCCTCTCGCCGTAAGAACCGGAAGGCGCACTTCACCGCCCCTT
CCAGCGTGCGCCGCATCTTGATGAGCGCGCCGCTGTCCACAGACCTCCGT
CAGAAGTACAACGTAAGGTCGATGCCTGTGCGCAAGGACGACGAGGTTCA
GGTTGTGCGTGGGACCTACAAGGGGCGCGAGGGCAAAGTCGTTCAAGTGT
ATCGCCGGAAGTGGGTCATTCACATCGAGCGCATCACTCGCGAGAAGGTT
AATGGATCCACTGTGAATGTGGGAATCAACCCATCAAAGGTCGTGATCAC
CAAGCTCCGTCTGGACAAGGACAGGAAGTCTTTGCTCGATCGCAAGGCCA
AGGGACGTGCCGCCGCCNACAAGGAGAAGGGTACCAAGTTCACCCCAGAG
GATATTATGCAGAGCGTTGACTAATTTTGATAAGAGGTTGTTTTTAAAGT
TTTTGTTTAATCATAGAATTTATGGAT
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