CX288820

Overview
NameCX288820
Unique NameCX288820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH_MYCLE (Cell division protease ftsH homolog OS=Mycobacterium leprae GN=ftsH PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.660e-29
Identity = 68/155 (43.87%), Postives = 96/155 (61.94%), Query Frame = 2
Query:   62 LAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL-LLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQV 523
            LA  T G  GAD+ANV NEAAL+ AR     +T    E A+DRVIGG  +K ++IS+ E++  AYHE GH +A W +   EP+ KVTI+ RG    G A  VP E+  L T+ ++       +GGRAAE+++  + +TGA +D+EK TK+  + V
Sbjct:  360 LAKRTVGMTGADLANVVNEAALLTARENGLVITGPALEEAVDRVIGGPRRKGRIISEQEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTG-GHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREPTTGAVSDIEKATKIARSMV 513          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTU (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis GN=ftsH PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.698e-29
Identity = 67/155 (43.23%), Postives = 97/155 (62.58%), Query Frame = 2
Query:   62 LAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL-LLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQV 523
            LA  T G  GAD+ANV NEAAL+ AR   + +T    E A+DRVIGG  +K ++IS+ E++  AYHE GH +A W +   EP+ KVTI+ RG    G A  VP E+  L T+ ++       +GGRAAE+++  + +TGA +D+E+ TK+  + V
Sbjct:  360 LAKRTVGMTGADLANVINEAALLTARENGTVITGPALEEAVDRVIGGPRRKGRIISEQEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTG-GHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREPTTGAVSDIEQATKIARSMV 513          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTA (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.698e-29
Identity = 67/155 (43.23%), Postives = 97/155 (62.58%), Query Frame = 2
Query:   62 LAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL-LLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQV 523
            LA  T G  GAD+ANV NEAAL+ AR   + +T    E A+DRVIGG  +K ++IS+ E++  AYHE GH +A W +   EP+ KVTI+ RG    G A  VP E+  L T+ ++       +GGRAAE+++  + +TGA +D+E+ TK+  + V
Sbjct:  360 LAKRTVGMTGADLANVINEAALLTARENGTVITGPALEEAVDRVIGGPRRKGRIISEQEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTG-GHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREPTTGAVSDIEQATKIARSMV 513          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH_MYCBO (Cell division protease ftsH homolog OS=Mycobacterium bovis GN=ftsH PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.698e-29
Identity = 67/155 (43.23%), Postives = 97/155 (62.58%), Query Frame = 2
Query:   62 LAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL-LLTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKMTYAQV 523
            LA  T G  GAD+ANV NEAAL+ AR   + +T    E A+DRVIGG  +K ++IS+ E++  AYHE GH +A W +   EP+ KVTI+ RG    G A  VP E+  L T+ ++       +GGRAAE+++  + +TGA +D+E+ TK+  + V
Sbjct:  360 LAKRTVGMTGADLANVINEAALLTARENGTVITGPALEEAVDRVIGGPRRKGRIISEQEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTG-GHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREPTTGAVSDIEQATKIARSMV 513          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH5_ARATH (Cell division protease ftsH homolog 5, chloroplastic OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.698e-29
Identity = 64/162 (39.51%), Postives = 104/162 (64.20%), Query Frame = 2
Query:   56 QRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL----LLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQV 523
            +++A  TPGF GAD+ N+ NEAA++AAR E  +++ +    A++R+I G EKKN V+S+ ++R VAYHE+GHA+ G  +   +P+ K++I+PRG A  G   + P+E      L ++  L +   + LGGR AE+V+ G   ++TGA ND  +V+++    V
Sbjct:  445 EKVARRTPGFTGADLQNLMNEAAILAARRELKEISKDEISDALERIIAGPEKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMV 605          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ftsH PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.136e-28
Identity = 69/171 (40.35%), Postives = 107/171 (62.57%), Query Frame = 2
Query:    5 QVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTL-GGRAAEQVLLG--KISTGAQNDLEKVTKM 508
            +V+++K+ L  +       +A  TPGF+GAD+AN+ NEAAL AAR  N  V+M HFE A D+++ G E+++ V+S  ++ + AYHE+GH + G  +   +P  KVTI+PRG  ALG   ++P  ++L    Q  +    TL GGR AE+++ G   +STGA ND++  T +
Sbjct:  332 KVHMRKVPLSEDVD--PMIIARGTPGFSGADLANLVNEAALFAARFNNRVVSMIHFEKAKDKIMMGSERRSMVMSDFQKESTAYHEAGHVIIGRLVPDHDPAHKVTIIPRG-QALGITFFLPESDILSISRQKLESQISTLYGGRLAEEIIYGSQNVSTGAFNDIKVATNL 499          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH1_ARATH (Cell division protease ftsH homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.938e-28
Identity = 63/156 (40.38%), Postives = 102/156 (65.38%), Query Frame = 2
Query:   59 RLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL----LLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKM 508
            ++A  TPGF GAD+ N+ NEAA++AAR E  +++ +    A++R+I G EKKN V+S+ ++R VAYHE+GHA+ G  +   +P+ K++I+PRG A  G   + P+E      L ++  L +   + LGGR AE+V+ G   ++TGA ND  +V+++
Sbjct:  458 KVARRTPGFTGADLQNLMNEAAILAARRELKEISKDEISDALERIIAGPEKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRV 612          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.531e-28
Identity = 67/171 (39.18%), Postives = 109/171 (63.74%), Query Frame = 2
Query:    5 QVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTL-GGRAAEQVLLG--KISTGAQNDLEKVTKM 508
            +V+++++ L   P   +  +A  TPGF+GAD+AN+ NEAAL AARG    V+M  FE A D+++ G E+++ V+++ ++ + AYHE+GHA+ G  +   +P+ KVTI+PRG  ALG   ++P  + +    Q  +    TL GGR AE+++ G   +STGA ND++  T +
Sbjct:  332 KVHMRRVPL--APDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRG-RALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNL 499          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.531e-28
Identity = 67/171 (39.18%), Postives = 109/171 (63.74%), Query Frame = 2
Query:    5 QVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTL-GGRAAEQVLLG--KISTGAQNDLEKVTKM 508
            +V+++++ L   P   +  +A  TPGF+GAD+AN+ NEAAL AARG    V+M  FE A D+++ G E+++ V+++ ++ + AYHE+GHA+ G  +   +P+ KVTI+PRG  ALG   ++P  + +    Q  +    TL GGR AE+++ G   +STGA ND++  T +
Sbjct:  332 KVHMRRVPL--APDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRG-RALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNL 499          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.531e-28
Identity = 67/171 (39.18%), Postives = 109/171 (63.74%), Query Frame = 2
Query:    5 QVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTL-GGRAAEQVLLG--KISTGAQNDLEKVTKM 508
            +V+++++ L   P   +  +A  TPGF+GAD+AN+ NEAAL AARG    V+M  FE A D+++ G E+++ V+++ ++ + AYHE+GHA+ G  +   +P+ KVTI+PRG  ALG   ++P  + +    Q  +    TL GGR AE+++ G   +STGA ND++  T +
Sbjct:  332 KVHMRRVPL--APDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRG-RALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNL 499          
The following BLAST results are available for this feature:
BLAST of CX288820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
FTSH_MYCLE6.660e-2943.87Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCTU8.698e-2943.23Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCTA8.698e-2943.23Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCBO8.698e-2943.23Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH5_ARATH8.698e-2939.51Cell division protease ftsH homolog 5, chloroplast... [more]
FTSH_BUCAP1.136e-2840.35Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH1_ARATH1.938e-2840.38Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH_SHIFL2.531e-2839.18Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_ECOLI2.531e-2839.18Cell division protease ftsH OS=Escherichia coli (s... [more]
FTSH_ECO572.531e-2839.18Cell division protease ftsH OS=Escherichia coli O1... [more]

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Properties
Property NameValue
Genbank descriptionC02004G06SK IF1 Citrus clementina cDNA clone C02004G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288820 ID=CX288820; Name=CX288820; organism=Citrus clementina; type=EST; length=531bp
ATTCCAAGTTTATTTGAAAAAGATCAAACTTGATCACGAACCATCTTATT
ATTCTCAGAGGCTTGCAGCACTCACTCCTGGATTTGCTGGAGCAGACATT
GCAAATGTTTGCAATGAAGCTGCTTTGATTGCTGCAAGGGGTGAAAATTC
ACAAGTCACAATGGAACATTTTGAGGCAGCTATAGATAGGGTCATTGGTG
GTCTGGAGAAGAAGAATAAGGTTATAAGCAAGTTGGAGCGCCGGACAGTT
GCTTACCATGAATCCGGCCATGCTGTTGCTGGATGGTTTCTGGAACATGC
AGAACCCTTGTTAAAAGTGACAATTGTTCCTCGAGGTACAGCTGCACTTG
GATTTGCCCAGTATGTCCCTAACGAGAACCTTCTTCTGACAAAGGAGCAG
CTTTTTGATATGACGTGTATGACCCTTGGCGGTCGAGCAGCTGAGCAGGT
TTTGTTGGGGAAGATATCTACTGGAGCTCAAAATGACTTGGAGAAGGTAA
CAAAGATGACCTATGCCCAAGTTGCCGTGTA
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