CX288820

Overview
NameCX288820
Unique NameCX288820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH_MYCGE (Cell division protease ftsH homolog OS=Mycoplasma genitalium GN=ftsH PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.277e-26
Identity = 66/158 (41.77%), Postives = 93/158 (58.86%), Query Frame = 2
Query:   62 LAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN--LLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQV 523
            +A  TPGF+GA + NV NEA L+A R   + + +   + AIDRVI G  KK++VIS  +R+ VAYHE+GHA+ G  +   + + K+TI+PRG A  G+    P      L  K  L  M    +GGRAAE+ + G  +I+TGA +D  K T +  A V
Sbjct:  428 VAKRTPGFSGAQLENVINEATLLAVRDNRTTININDIDEAIDRVIAGPAKKSRVISDEDRKLVAYHEAGHALVGLHVHSNDEVQKITIIPRGQAG-GYTLSTPKSGDLNLKRKSDLLAMIATAMGGRAAEEEIYGNLEITTGASSDFYKATNIARAMV 584          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH2_HAEIN (Cell division protease ftsH homolog 2 OS=Haemophilus influenzae GN=ftsH-B PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.277e-26
Identity = 64/171 (37.43%), Postives = 107/171 (62.57%), Query Frame = 2
Query:    5 QVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVP-NENLLLTKEQLFDMTCMTLGGRAAEQVLLGK--ISTGAQNDLEKVTKM 508
            +V+++K+ +  +    +  LA  TPG++GAD+AN+ NEAAL AAR     VTM  FE A D++  G E++  +++  ++ + AYHE+GHA+ G+ +   +P+ KVTI+PRG  ALG   ++P  + + ++++QL         GR AE ++ G+  ISTGA ND++  T +
Sbjct:   77 KVHMRKVSVAQDVD--AMTLARGTPGYSGADLANLVNEAALFAARVNKRTVTMLEFEKAKDKINMGPERRTMIMTDKQKESTAYHEAGHAIVGYLVPEHDPVHKVTIIPRG-RALGVTFFLPEGDQISISQKQLESKLSTLYAGRLAEDLIYGEENISTGASNDIKVATNI 244          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.277e-26
Identity = 64/171 (37.43%), Postives = 107/171 (62.57%), Query Frame = 2
Query:    5 QVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVP-NENLLLTKEQLFDMTCMTLGGRAAEQVLLGK--ISTGAQNDLEKVTKM 508
            +V+++K+ +  +    +  LA  TPG++GAD+AN+ NEAAL AAR     VTM  FE A D++  G E++  +++  ++ + AYHE+GHA+ G+ +   +P+ KVTI+PRG  ALG   ++P  + + ++++QL         GR AE ++ G+  ISTGA ND++  T +
Sbjct:  331 KVHMRKVSVAQDVD--AMTLARGTPGYSGADLANLVNEAALFAARVNKRTVTMLEFEKAKDKINMGPERRTMIMTDKQKESTAYHEAGHAIVGYLVPEHDPVHKVTIIPRG-RALGVTFFLPEGDQISISQKQLESKLSTLYAGRLAEDLIYGEENISTGASNDIKVATNI 498          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.176e-25
Identity = 66/157 (42.04%), Postives = 99/157 (63.06%), Query Frame = 2
Query:   62 LAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPN-ENLLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQV 523
            +A  TPGF+GAD+AN+ N AAL AA   +  VTM   E A DR++ G E+K+ VIS   R+  A+HE GHA+     E A P+ K TIVPRG  ALG    +P+ +   ++++Q+     + +GGR AE+++ G  ++++GA +DLE+ TK+  A V
Sbjct:  421 IARGTPGFSGADLANLVNVAALKAAMDGSKDVTMSDLEFAKDRIMMGSERKSAVISDESRKLTAFHEGGHALVAIHTEGALPVHKATIVPRG-MALGMVSQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGESEVTSGASSDLEQATKLARAMV 576          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.420e-25
Identity = 69/162 (42.59%), Postives = 96/162 (59.26%), Query Frame = 2
Query:   62 LAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEP----LLKVTIVPRGTAALGFAQYVP--NENLLLTKEQLFDMTCMTLGGRAAEQVLL-GKISTGAQNDLEKVTKMTYAQVA 526
            +AA+T GF GAD+AN+ NEAAL+A R     V    F  A++R I G+EKK+  +   E+  VA HE GHAV G  + +  P    + K++I+PR   ALGF    P   +  LL  ++L       LGGRAAE+V+L G++STGA +D+ + T M Y  VA
Sbjct:  546 IAAMTTGFTGADLANLVNEAALLAGRSNKEIVEKIDFICAVERSIAGIEKKHAKLKGNEKAVVARHEVGHAVVGTAVANLLPGQPRVEKLSILPRSGGALGFTYTPPTTEDRYLLFVDELRGRLVTLLGGRAAEEVVLSGRVSTGALDDIRRATDMAYKAVA 707          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.467e-25
Identity = 65/176 (36.93%), Postives = 108/176 (61.36%), Query Frame = 2
Query:    5 QVYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQV 523
            +V+    K D++ S   + +A  TPGF+GAD+AN+ NEAA++A R   + ++ +  + +IDR++ G+E       K  +  VAYHE GHAV G      + + KVT++PRG A  G   ++P+++  L++K+QLF      LGGRAAE+++ G  +++TGA  DL+++T +    V
Sbjct:  407 KVHAGNKKFDNDVSL--EIIAMRTPGFSGADLANLLNEAAILAGRRARTSISSKEIDDSIDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAVCGTLTPGHDAVQKVTLIPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGDSEVTTGAVGDLQQITGLARQMV 578          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.620e-25
Identity = 60/157 (38.22%), Postives = 99/157 (63.06%), Query Frame = 2
Query:   62 LAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVP-NENLLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQV 523
            +A  TPGF+GAD+AN+ NEAA++A R   + ++ +  + +IDR++ G+E       K  +  VAYHE GHA+ G      +P+ KVT++PRG A  G   ++P ++  L++++QLF      LGGRAAE+++ G  +++TGA  DL+++T +    V
Sbjct:  411 IAMRTPGFSGADLANLLNEAAILAGRRGRTAISSKEIDDSIDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAICGTLTPGHDPVQKVTLIPRGQAR-GLTWFIPMDDPTLISRQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITGLAKQMV 565          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.952e-25
Identity = 61/157 (38.85%), Postives = 100/157 (63.69%), Query Frame = 2
Query:   62 LAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQV 523
            +A  TPGF+GAD+AN+ NEAA++A R   + ++ +  + +IDR++ G+E       K  +  VAYHE GHA+ G      + + KVT++PRG A  G   ++P+++  L++K+QLF      LGGRAAE+V+ G  +++TGA +DL+++T +    V
Sbjct:  417 IAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGESEVTTGAVSDLQQITGLAKQMV 571          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.300e-24
Identity = 63/158 (39.87%), Postives = 98/158 (62.03%), Query Frame = 2
Query:   62 LAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN--LLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQV 523
            +A  TPGF+GAD+AN+ NEAA++A R    ++T+   + +IDR++ GLE  +    K  +  VAYHE GHAV        + + KVT++PRG A  G   ++P E    L++++Q+F      LGGRAAE+V+ G  +++TGA  DL++VT++    V
Sbjct:  419 VAMRTPGFSGADLANLMNEAAILAGRRGKDRITVSEIDDSIDRIVAGLEGTSMTDGK-SKMLVAYHEIGHAVCATLTAGHDEVQKVTLIPRGQAR-GLTWFLPGEEDPALVSRQQIFAGIVGGLGGRAAEEVVFGEPEVTTGAAGDLQQVTRVARRMV 574          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.697e-24
Identity = 63/156 (40.38%), Postives = 93/156 (59.62%), Query Frame = 2
Query:   62 LAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVTKMTYAQV 523
            +A  TPGF+GAD+AN+ N AAL AA      VTM   E A DR++ G E+K+ VIS   R+  AYHE GHA+     E A P+ K TIVPRG A    AQ    +   ++++Q+     + +GGR AE+++ G  ++++GA +D ++ T +  A V
Sbjct:  424 IARGTPGFSGADLANLVNVAALKAAMDGAKAVTMNDLEYAKDRIMMGSERKSAVISDESRKLTAYHEGGHALVAIHTEGAHPVHKATIVPRGMALGMVAQLPDKDETSVSRKQMLARLDVCMGGRVAEELIFGDSEVTSGASSDFQQATAVARAMV 579          
The following BLAST results are available for this feature:
BLAST of CX288820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
FTSH_MYCGE5.277e-2641.77Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH2_HAEIN5.277e-2637.43Cell division protease ftsH homolog 2 OS=Haemophil... [more]
FTSH1_HAEIN5.277e-2637.43Cell division protease ftsH homolog 1 OS=Haemophil... [more]
FTSH4_ARATH1.176e-2542.04Cell division protease ftsH homolog 4, mitochondri... [more]
FTSH7_ORYSJ3.420e-2542.59Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH2_ARATH4.467e-2536.93Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH2_ORYSJ7.620e-2538.22Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH8_ARATH9.952e-2538.85Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH6_ORYSJ1.300e-2439.87Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH5_ORYSJ1.697e-2440.38Cell division protease ftsH homolog 5, mitochondri... [more]

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Properties
Property NameValue
Genbank descriptionC02004G06SK IF1 Citrus clementina cDNA clone C02004G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288820 ID=CX288820; Name=CX288820; organism=Citrus clementina; type=EST; length=531bp
ATTCCAAGTTTATTTGAAAAAGATCAAACTTGATCACGAACCATCTTATT
ATTCTCAGAGGCTTGCAGCACTCACTCCTGGATTTGCTGGAGCAGACATT
GCAAATGTTTGCAATGAAGCTGCTTTGATTGCTGCAAGGGGTGAAAATTC
ACAAGTCACAATGGAACATTTTGAGGCAGCTATAGATAGGGTCATTGGTG
GTCTGGAGAAGAAGAATAAGGTTATAAGCAAGTTGGAGCGCCGGACAGTT
GCTTACCATGAATCCGGCCATGCTGTTGCTGGATGGTTTCTGGAACATGC
AGAACCCTTGTTAAAAGTGACAATTGTTCCTCGAGGTACAGCTGCACTTG
GATTTGCCCAGTATGTCCCTAACGAGAACCTTCTTCTGACAAAGGAGCAG
CTTTTTGATATGACGTGTATGACCCTTGGCGGTCGAGCAGCTGAGCAGGT
TTTGTTGGGGAAGATATCTACTGGAGCTCAAAATGACTTGGAGAAGGTAA
CAAAGATGACCTATGCCCAAGTTGCCGTGTA
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