CX288820

Overview
NameCX288820
Unique NameCX288820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: FTSH9_ORYSJ (Cell division protease ftsH homolog 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH9 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.139e-20
Identity = 62/173 (35.84%), Postives = 97/173 (56.07%), Query Frame = 2
Query:   62 LAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRT---------------VAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLLTKEQLFDMTCMTLGGRAAEQVLLGK--ISTGAQNDLEKVTKMTYAQVA 526
            +A  TPGF GAD+AN+ N AA+ AA     ++     E A DR+I G E+K+  IS   ++                 AYHESGHA+     + A P+ K TI+PRG +ALG    +P+++   ++K+QL     + +GGR AE+++ G+  ++TGA+NDL   T++    V+
Sbjct:  521 IARSTPGFNGADLANLVNIAAIKAAVEGADKLAAAQLEFAKDRIIMGTERKSMFISDESKKACLFKLLYFILRELILTAYHESGHAIVALNTQGAHPIHKATILPRG-SALGMVTQLPSQDETSISKKQLLARLDVCMGGRVAEELIFGEDNVTTGARNDLHTATELAQYMVS 692          
BLAST of CX288820 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.663e-19
Identity = 60/168 (35.71%), Postives = 92/168 (54.76%), Query Frame = 2
Query:    8 VYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGENSQVTMEHFEAAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENL-LLTKEQLFDMTCMTLGGRAAEQVLLG--KISTGAQNDLEKVT 502
            +YLKK+K         ++LA  T G+ GADI N+ N+AA+ AA   +  V M H   A DR+I G   K + +     R  A+HE+GHA+       + PL KVTI+PRG A  G   ++  +++  +T+ QL     + +GGR  E+++ G  K++ GA +D  K T
Sbjct:  345 LYLKKVKTGSNIDI--EKLAHGTVGYTGADIQNLVNQAAIAAALRNDPFVEMHHLWDARDRLIMG-PAKRRPLDDQTNRVSAFHEAGHALVALLTADSIPLHKVTIIPRGEAG-GLTSFLQEKDISFMTRAQLLAQLDVLMGGRVGEELVFGADKVTNGAADDFRKAT 508          
The following BLAST results are available for this feature:
BLAST of CX288820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
FTSH9_ORYSJ1.139e-2035.84Cell division protease ftsH homolog 9, chloroplast... [more]
YME1_SCHMA3.663e-1935.71Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC02004G06SK IF1 Citrus clementina cDNA clone C02004G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288820 ID=CX288820; Name=CX288820; organism=Citrus clementina; type=EST; length=531bp
ATTCCAAGTTTATTTGAAAAAGATCAAACTTGATCACGAACCATCTTATT
ATTCTCAGAGGCTTGCAGCACTCACTCCTGGATTTGCTGGAGCAGACATT
GCAAATGTTTGCAATGAAGCTGCTTTGATTGCTGCAAGGGGTGAAAATTC
ACAAGTCACAATGGAACATTTTGAGGCAGCTATAGATAGGGTCATTGGTG
GTCTGGAGAAGAAGAATAAGGTTATAAGCAAGTTGGAGCGCCGGACAGTT
GCTTACCATGAATCCGGCCATGCTGTTGCTGGATGGTTTCTGGAACATGC
AGAACCCTTGTTAAAAGTGACAATTGTTCCTCGAGGTACAGCTGCACTTG
GATTTGCCCAGTATGTCCCTAACGAGAACCTTCTTCTGACAAAGGAGCAG
CTTTTTGATATGACGTGTATGACCCTTGGCGGTCGAGCAGCTGAGCAGGT
TTTGTTGGGGAAGATATCTACTGGAGCTCAAAATGACTTGGAGAAGGTAA
CAAAGATGACCTATGCCCAAGTTGCCGTGTA
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