CX288822

Overview
NameCX288822
Unique NameCX288822
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13865 contig Ccv1_Contig13865:177..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_ANAVT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.932e-41
Identity = 74/135 (54.81%), Postives = 98/135 (72.59%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D K F+  L  S+NYNR+GFGH+ E    +  EY S +I+++++  +    G+V ++LA+++GFCWGVERAV +AYE RK FP E+IWITNEIIHNP+VN R++EM V  IPVE G K F VV   DVV+LPAFG
Sbjct:    2 DTKTFKRTLQHSENYNRKGFGHQAEVATQLQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFCWGVERAVAMAYETRKHFPTERIWITNEIIHNPSVNQRMQEMQVGFIPVEAGNKDFSVVGNNDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_ANASP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena sp. (strain PCC 7120) GN=ispH PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.932e-41
Identity = 74/135 (54.81%), Postives = 98/135 (72.59%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D K F+  L  S+NYNR+GFGH+ E    +  EY S +I+++++  +    G+V ++LA+++GFCWGVERAV +AYE RK FP E+IWITNEIIHNP+VN R++EM V  IPVE G K F VV   DVV+LPAFG
Sbjct:    2 DTKTFKRTLQHSENYNRKGFGHQAEVATQLQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFCWGVERAVAMAYETRKHFPTERIWITNEIIHNPSVNQRMQEMQVGFIPVEAGNKDFSVVGNNDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_SYNSC (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9605) GN=ispH PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.135e-41
Identity = 76/135 (56.30%), Postives = 97/135 (71.85%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D   F+ +L  S+ YNRRGFG  EE  E + Q Y S +I  +++NG+    G + V+LAE++GFCWGVERAV +AYE RK +P E++WITNEIIHNP+VN+ L EM VQ IPVE+G K F  V  GDVV+LPAFG
Sbjct:    2 DTHAFKRSLHHSERYNRRGFGRAEEVAESLEQAYQSGLIGTIRDNGYRLEHGRLNVRLAEAFGFCWGVERAVAMAYETRKHYPSERLWITNEIIHNPSVNDHLREMDVQFIPVEQGVKDFSGVTSGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9902) GN=ispH PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.494e-40
Identity = 76/135 (56.30%), Postives = 97/135 (71.85%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D   F+ +L  S+ YNRRGFG  EE  E + Q Y S +I  +++NG++ T G + V LAE++GFCWGVERAV +AYE R+ +P E++WITNEIIHNP+VN+ L EM V  IPVEEG K F  V  GDVV+LPAFG
Sbjct:    2 DTHAFKRSLHHSERYNRRGFGRAEEVAENLEQAYQSGLIGTIRDNGYKLTHGRLNVHLAEAFGFCWGVERAVAMAYETRRHYPSERLWITNEIIHNPSVNDHLREMDVLFIPVEEGVKDFSGVTSGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_SYNPW (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain WH7803) GN=ispH PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.494e-40
Identity = 75/135 (55.56%), Postives = 96/135 (71.11%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D   F+ +L  SD YNRRGFG  EE    + Q Y S +I  +++NG+    G ++V+LA+ +GFCWGVERAV +AYE RK +P E++WITNEIIHNP+VN+ L EM VQ IPVE+G K F  V  GDVV+LPAFG
Sbjct:    2 DTHAFKRSLHHSDRYNRRGFGRAEEVAGSLEQAYQSSLIGSIRDNGYRLNHGRLQVRLAKDFGFCWGVERAVAMAYETRKHYPSERLWITNEIIHNPSVNDHLREMNVQFIPVEQGVKDFSGVTSGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP8 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 8801) GN=ispH PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.548e-40
Identity = 70/135 (51.85%), Postives = 103/135 (76.30%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D K F+ +L +S+NY+R+GFG  E  + +MN EY S +I+++++N +++  GNV + LA+++GFCWGVERAV +AYE R+ FP+E IWITNE+IH+P+VN RLE+M ++ I V  G+K F  +  GDVV+LPAFG
Sbjct:    2 DTKAFKRSLQQSENYHRKGFGQTEAAMGVMNTEYQSSLIQQIRQNNYQWKQGNVTIHLAQAFGFCWGVERAVAMAYETRQHFPKESIWITNELIHHPSVNQRLEQMEIKFIEVINGQKDFSQIKSGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_NOSP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ispH PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.328e-40
Identity = 72/135 (53.33%), Postives = 100/135 (74.07%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D K F+ +L  S+NYNR+GFGH+ E    +  EY S++I+++++  +    G+V ++LA+++GFCWGVERAV +AYE R+ FP E IWITNEIIHNP+VN R++EM V+ IP+E   K F VV  GDVV+LPAFG
Sbjct:    2 DTKAFKRSLQHSENYNRKGFGHQAEVATQLQSEYQSNLIQEIRDRNYILQRGDVTIRLAQAFGFCWGVERAVAMAYETRQHFPTEHIWITNEIIHNPSVNQRMQEMEVEFIPIEGKNKDFSVVGTGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 4.347e-40
Identity = 76/136 (55.88%), Postives = 102/136 (75.00%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPV-EEGKKQFDVVNKGDVVVLPAFG 501
            D K F+ +L  S+ Y+R+GFGH+ E  E++  EY S +I++++ENG  +  G V ++LAE++GFCWGVERAV +AYE R+ FP E+IWITNEIIHNP+VN  L EM V+ IPV E+G+K F VV   DVV+LPAFG
Sbjct:    2 DTKAFKRSLHSSNQYHRKGFGHEAEVTEMLRFEYQSSLIQQIRENGNRFQRGEVTIQLAEAFGFCWGVERAVALAYETRQHFPTERIWITNEIIHNPSVNQNLREMQVEFIPVDEQGQKDFSVVAGEDVVILPAFG 137          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9311) GN=ispH PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.157e-39
Identity = 75/135 (55.56%), Postives = 96/135 (71.11%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D   F+ +L  SD YNRRGFG  +E    + Q Y S +I  +++NG+  T G +KV+LAE++GFCWGVERAV +AYE R+ +P+E+IWITNEIIHNP+VN+ L EM V  I VE G K F  V  GDVV+LPAFG
Sbjct:    2 DTHAFKRSLHHSDRYNRRGFGRADEVAGSLEQAYQSSLIGSIRDNGYSLTHGRLKVRLAEAFGFCWGVERAVAMAYETRRHYPQERIWITNEIIHNPSVNDHLREMDVLFISVEGGVKDFSGVATGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_PROMS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain AS9601) GN=ispH PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.680e-39
Identity = 71/135 (52.59%), Postives = 97/135 (71.85%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D + FR +L  SD YNRRGF    +  + + + Y SD+I  +++NGF YT G + +KLA+++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN+ L +M V+ I  + G K F +V+ GDVV+LPAFG
Sbjct:    2 DTQAFRRSLHHSDRYNRRGFDSPTKRAQALEEAYQSDLISSIRDNGFTYTKGRLNIKLAQAFGFCWGVERAVAMAYETRRHYPNENIWITNEIIHNPSVNDHLRKMNVKFISAKNGIKDFSLVSNGDVVILPAFG 136          
The following BLAST results are available for this feature:
BLAST of CX288822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_ANAVT3.932e-4154.814-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ANASP3.932e-4154.814-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNSC5.135e-4156.304-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS91.494e-4056.304-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNPW1.494e-4055.564-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP82.548e-4051.854-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_NOSP73.328e-4053.334-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP44.347e-4055.884-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS32.157e-3955.564-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMS3.680e-3952.594-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC02004G08SK IF1 Citrus clementina cDNA clone C02004G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288822 ID=CX288822; Name=CX288822; organism=Citrus clementina; type=EST; length=501bp
ATTCGGCACGAGGCTCCGCCGCGCCGGAGGCCTGTGATCGTCAGGTGCTC
CGGTGAAAAATCGCCGAGCTCGGCGGCGGCTATTGGTGCCGAATTTGACG
CGAAACTGTTTCGGCATAACTTGACGAGAAGTGATAATTACAATCGGAGA
GGATTTGGCCACAAGGAAGAGACTTTGGAGCTCATGAATCAGGAGTACAC
AAGTGATATTATAAAGAAATTGAAGGAGAATGGATTTGAGTATACTTGGG
GAAATGTTAAGGTGAAGCTGGCCGAATCATATGGCTTTTGCTGGGGAGTT
GAGCGTGCTGTGCAGATTGCTTATGAAGCAAGAAAACAGTTTCCTGAGGA
GAAGATCTGGATTACCAATGAAATCATACACAATCCAACTGTTAATAATC
GGTTGGAGGAGATGGCAGTTCAAAATATACCTGTTGAGGAAGGAAAGAAG
CAATTTGATGTGGTAAATAAGGGTGATGTTGTGGTTTTGCCTGCATTTGG
G
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