CX288822

Overview
NameCX288822
Unique NameCX288822
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13865 contig Ccv1_Contig13865:177..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_PROM0 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9301) GN=ispH PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.680e-39
Identity = 71/135 (52.59%), Postives = 97/135 (71.85%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D + FR +L  SD YNRRGF    +  + + + Y SD+I  +++NGF YT G + +KLA+++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN+ L +M V+ I  + G K F +V+ GDVV+LPAFG
Sbjct:    2 DTQAFRRSLHHSDRYNRRGFDSPTKRAQALEEAYQSDLISSIRDNGFTYTKGRLNIKLAQAFGFCWGVERAVAMAYETRRHYPNENIWITNEIIHNPSVNDHLRKMNVKFISAKNGIKDFSLVSNGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_PROM9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9312) GN=ispH PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.826e-38
Identity = 70/135 (51.85%), Postives = 96/135 (71.11%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D + FR +L  SD YNRRGF    +  + + + Y SD+I  +++NGF Y  G + +KLA+++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN+ L +M V+ I  + G K F +V+ GDVV+LPAFG
Sbjct:    2 DTQAFRRSLHHSDRYNRRGFDSPTKRAQALEEAYQSDLISSIRDNGFTYNKGRLNIKLAKAFGFCWGVERAVAMAYETRRHYPNENIWITNEIIHNPSVNDHLRKMNVKFISAKNGIKDFSLVSNGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_PROMM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9313) GN=ispH PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 9.064e-38
Identity = 72/135 (53.33%), Postives = 93/135 (68.89%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D + F+ +L  S+ YNRRGFG   E    + + Y S +I  +++NG+    G ++VKLAE++GFCWGVERAV +AYE R+ +P E+IWITNEIIHNP+VN  L EM V  I  E G K F  VN GDVV+LPAFG
Sbjct:    2 DTQAFKRSLHHSERYNRRGFGRANEVASNLEKAYQSSLIGSIRDNGYVLQHGRLQVKLAEAFGFCWGVERAVAMAYETRRHYPSERIWITNEIIHNPSVNEHLREMDVLFIHAEGGVKDFSCVNDGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_TRIEI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Trichodesmium erythraeum (strain IMS101) GN=ispH PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.184e-37
Identity = 67/135 (49.63%), Postives = 98/135 (72.59%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D K F   L +S+NYNR+GFGH +E   LM   Y S++I++++EN +    G V +KLA+++GFCWGVER+V +AYE R+ FP ++IWI+ E+IHNP+VN  +++M ++ IPV +G+K F V    DVV+LPAFG
Sbjct:    2 DTKAFTRALKKSENYNRQGFGHAQEVATLMQSAYKSNLIQQIRENNYTLQRGEVTIKLAKTFGFCWGVERSVAMAYETRQHFPNQQIWISYELIHNPSVNQDMKDMEIKFIPVIDGQKDFSVAGNNDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_PROMT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL2A) GN=ispH PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.184e-37
Identity = 73/135 (54.07%), Postives = 95/135 (70.37%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D + F+  L +SD YNRRGFG   +  + + + Y S +I  ++ENG     G +KVKLAE++GFCWGVER+V +AYE RK +P E+IWITNEIIHNP+VN+ L +M V  I  E+G K F VV  GDVV+LPAFG
Sbjct:    2 DTQAFKQTLHKSDRYNRRGFGSANKRAQALAEAYQSGLIGSIRENGNLLEHGRLKVKLAEAFGFCWGVERSVAMAYETRKHYPNERIWITNEIIHNPSVNDHLRKMNVLFISEEKGVKDFSVVKDGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_PROM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL1A) GN=ispH PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.184e-37
Identity = 73/135 (54.07%), Postives = 95/135 (70.37%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D + F+  L +SD YNRRGFG   +  + + + Y S +I  ++ENG     G +KVKLAE++GFCWGVER+V +AYE RK +P E+IWITNEIIHNP+VN+ L +M V  I  E+G K F VV  GDVV+LPAFG
Sbjct:    2 DTQAFKQTLHKSDRYNRRGFGSANKRAQALAEAYQSGLIGSIRENGNLLEHGRLKVKLAEAFGFCWGVERSVAMAYETRKHYPNERIWITNEIIHNPSVNDHLRKMNVLFISEEKGVKDFSVVKDGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_PROMP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ispH PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.546e-37
Identity = 69/135 (51.11%), Postives = 95/135 (70.37%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D + FR +L  SD YNRRGF    +  + + + Y SD+I  ++ N F Y  G + +KLA+++GFCWGVERAV +AYE R+ +P+E IWITNEIIHNP+VN+ L +M V+ I  + G K F +V+ GDVV+LPAFG
Sbjct:    2 DTQAFRRSLHHSDRYNRRGFDSPTKRAQALEEAYQSDLITSIRNNSFTYKKGRLNIKLAQAFGFCWGVERAVAMAYETRRHYPDENIWITNEIIHNPSVNDHLRKMNVKFISAKNGIKDFSLVSDGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_PROM3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9303) GN=ispH PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.444e-37
Identity = 71/135 (52.59%), Postives = 93/135 (68.89%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D + F+ +L  S+ YNRRGFG   E    + + Y S +I  +++NG+    G ++VKLAE++GFCWGVERAV +AYE R+ +P E+IWITNEIIHNP+VN  L EM V  I  E G K F  V+ GDVV+LPAFG
Sbjct:    2 DTQAFKRSLHHSERYNRRGFGRANEVASNLEKAYQSSLIGSIRDNGYVLQHGRLQVKLAEAFGFCWGVERAVAMAYETRRHYPSERIWITNEIIHNPSVNEHLREMDVLFIHAEGGVKDFSCVSDGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_PROM4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9211) GN=ispH PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 4.498e-37
Identity = 69/135 (51.11%), Postives = 97/135 (71.85%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D + F+ +L  SD YNRRGF    +  + + + Y S++I  +++NG+ +  G ++VKLAE++GFCWGVERAV +AYE R+ +P+E IWITNEIIHNP+VN+ L  M V+ I  E+G K F  V +GDVV+LPAFG
Sbjct:    2 DTQAFKRSLHHSDRYNRRGFESPTKRAQALEKAYQSNLIGSIRDNGYLFEHGRLRVKLAEAFGFCWGVERAVAMAYETRRHYPKESIWITNEIIHNPSVNDHLRNMNVRFISAEKGIKNFSSVQEGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_PROMA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus GN=ispH PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.709e-36
Identity = 69/135 (51.11%), Postives = 95/135 (70.37%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D + F+ +L  SD YNRRGF    +  + + + Y S++I  +++NG+    G ++VKLAE++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN+ L  M V+ I  E+G K F  V +GDVV+LPAFG
Sbjct:    2 DTQAFKRSLHHSDRYNRRGFESPAKRAQALEKAYQSNLIASIRDNGYLLEHGRLRVKLAEAFGFCWGVERAVAMAYETRRHYPTESIWITNEIIHNPSVNDHLRNMNVRFISAEKGIKDFSSVEEGDVVILPAFG 136          
The following BLAST results are available for this feature:
BLAST of CX288822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_PROM03.680e-3952.594-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM91.826e-3851.854-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMM9.064e-3853.334-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_TRIEI1.184e-3749.634-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMT1.184e-3754.074-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM11.184e-3754.074-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMP1.546e-3751.114-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM33.444e-3752.594-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM44.498e-3751.114-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMA1.709e-3651.114-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC02004G08SK IF1 Citrus clementina cDNA clone C02004G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288822 ID=CX288822; Name=CX288822; organism=Citrus clementina; type=EST; length=501bp
ATTCGGCACGAGGCTCCGCCGCGCCGGAGGCCTGTGATCGTCAGGTGCTC
CGGTGAAAAATCGCCGAGCTCGGCGGCGGCTATTGGTGCCGAATTTGACG
CGAAACTGTTTCGGCATAACTTGACGAGAAGTGATAATTACAATCGGAGA
GGATTTGGCCACAAGGAAGAGACTTTGGAGCTCATGAATCAGGAGTACAC
AAGTGATATTATAAAGAAATTGAAGGAGAATGGATTTGAGTATACTTGGG
GAAATGTTAAGGTGAAGCTGGCCGAATCATATGGCTTTTGCTGGGGAGTT
GAGCGTGCTGTGCAGATTGCTTATGAAGCAAGAAAACAGTTTCCTGAGGA
GAAGATCTGGATTACCAATGAAATCATACACAATCCAACTGTTAATAATC
GGTTGGAGGAGATGGCAGTTCAAAATATACCTGTTGAGGAAGGAAAGAAG
CAATTTGATGTGGTAAATAAGGGTGATGTTGTGGTTTTGCCTGCATTTGG
G
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