CX288822

Overview
NameCX288822
Unique NameCX288822
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_PROM5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9515) GN=ispH PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.709e-36
Identity = 67/135 (49.63%), Postives = 93/135 (68.89%), Query Frame = 1
Query:   97 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            D +  +H++  S  YNR+GF    +  + + + Y SD+I  ++EN F +  G +K+KLA+S+GFCWGVERAV +AYE R+ +P E IW+TNEIIHNP+VNN L  M V+ I  + G K F  V+ GDVV+LPAFG
Sbjct:    2 DTQAIKHSVQHSGRYNRKGFESPTQRAKALGESYQSDLIASIRENNFSFEKGRLKIKLAKSFGFCWGVERAVAMAYETRRHYPNEDIWMTNEIIHNPSVNNHLSRMNVKIISAKNGIKDFSSVSTGDVVILPAFG 136          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_SYNY3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=ispH PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 2.824e-31
Identity = 61/107 (57.01%), Postives = 81/107 (75.70%), Query Frame = 1
Query:  181 LMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 501
            +MN EY S +I+++++N +    G+V + LAE++GFCWGVERAV +AYE R+ FP +++WITNEIIHNP+VN RL EM V  I V  G+K F  V KGDVV+LPAFG
Sbjct:    3 VMNTEYQSHLIQEIRQNNYRLERGDVTILLAEAFGFCWGVERAVAMAYETRQHFPGDRLWITNEIIHNPSVNQRLREMEVNFIDVVNGEKDFSGVAKGDVVILPAFG 109          
BLAST of CX288822 vs. ExPASy Swiss-Prot
Match: ISPH_GLOVI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Gloeobacter violaceus GN=ispH PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.238e-28
Identity = 59/129 (45.74%), Postives = 85/129 (65.89%), Query Frame = 1
Query:  127 RSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNNRLEEMAVQNIPVEEG----KKQFDVVNKGDVVVLPAFG 501
            +S NY R+GFG K E  + +  EY S +I +++ NG+    G V V+LAE++GFCWGV++AV +AYE  + F   ++WITNEIIHNP VN  L  M ++ +  +E      K F+ V++ DVV+LPAFG
Sbjct:    2 QSKNYFRKGFGLKAEVQDDLKAEYESSLIHEIRANGYTLRRGGVTVRLAEAFGFCWGVDKAVSMAYETHRMFAGRQLWITNEIIHNPLVNQHLRAMGIRFLDEDESGRRVPKDFERVSEKDVVILPAFG 130          
The following BLAST results are available for this feature:
BLAST of CX288822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_PROM51.709e-3649.634-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNY32.824e-3157.014-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GLOVI2.238e-2845.744-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC02004G08SK IF1 Citrus clementina cDNA clone C02004G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288822 ID=CX288822; Name=CX288822; organism=Citrus clementina; type=EST; length=501bp
ATTCGGCACGAGGCTCCGCCGCGCCGGAGGCCTGTGATCGTCAGGTGCTC
CGGTGAAAAATCGCCGAGCTCGGCGGCGGCTATTGGTGCCGAATTTGACG
CGAAACTGTTTCGGCATAACTTGACGAGAAGTGATAATTACAATCGGAGA
GGATTTGGCCACAAGGAAGAGACTTTGGAGCTCATGAATCAGGAGTACAC
AAGTGATATTATAAAGAAATTGAAGGAGAATGGATTTGAGTATACTTGGG
GAAATGTTAAGGTGAAGCTGGCCGAATCATATGGCTTTTGCTGGGGAGTT
GAGCGTGCTGTGCAGATTGCTTATGAAGCAAGAAAACAGTTTCCTGAGGA
GAAGATCTGGATTACCAATGAAATCATACACAATCCAACTGTTAATAATC
GGTTGGAGGAGATGGCAGTTCAAAATATACCTGTTGAGGAAGGAAAGAAG
CAATTTGATGTGGTAAATAAGGGTGATGTTGTGGTTTTGCCTGCATTTGG
G
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