CX288823

Overview
NameCX288823
Unique NameCX288823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13435 contig Ccv1_Contig13435:431..1046. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUN23_ORYSJ (Endoglucanase 23 OS=Oryza sativa subsp. japonica GN=GLU12 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.909e-40
Identity = 78/183 (42.62%), Postives = 108/183 (59.02%), Query Frame = 3
Query:    9 EHHHAIEAIKWGTDYFIKAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKG---YYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLDNADRFGGITWAITEFSWDVKYAGVQIIAS 548
            E  HA +A++W TDY +K  +HP V++++VGD   DH CW+RPEDM T+R  Y +    PGSDVAGET       S+VFR  +P Y+  LL  A+  FEF D+++G Y    E+  G   +Y    GY DELLW A WL +A+    YL Y+ +N    G    +  EF WD K+AG+ ++ S
Sbjct:  125 ERAHAADAVRWATDYLLKTISHPGVIFIQVGDPTKDHGCWERPEDMDTARTVYNISAARPGSDVAGETAAALAAASMVFRDDDPAYAARLLAGARSAFEFADEHKGAYSDDPELRAGGCPFYCDFDGYQDELLWGAAWLRRASKEGTYLDYIQNNGKTLGAED-STNEFGWDNKHAGINVLVS 306          
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUN8_ORYSJ (Endoglucanase 8 OS=Oryza sativa subsp. japonica GN=Os02g0778600 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.105e-40
Identity = 82/184 (44.57%), Postives = 114/184 (61.96%), Query Frame = 3
Query:    6 REHHHAIEAIKWGTDYFIKAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLDNADRFGGITWAITEFSWDVKYAGVQIIASMVN 557
            RE  +   AI+WGTDYF+KA T    LWV+VGD + DH CW RPE+M T R  Y+++++ PGS++A ET       S+VFRK  P YS  LL+ A+ LF+F   ++G YD        +Y S SGY DELLWAA WLY AT  + Y  ++   A     I+ ++ EFSWD+K+ G Q++ + +N
Sbjct:  125 RELENVHAAIRWGTDYFLKAATKKDHLWVQVGDPNADHQCWVRPENMPTPRTLYQINDKTPGSEIAAETAAAMTASSMVFRKDKP-YSRRLLNKAKLLFQFAKTHQGTYDGECP----FYCSYSGYNDELLWAATWLYLATKRQVYADFIGHEA-----ISSSVAEFSWDLKFPGAQVLLAELN 298          
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUN24_ORYSJ (Endoglucanase 24 OS=Oryza sativa subsp. japonica GN=Os09g0533900 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.533e-39
Identity = 82/189 (43.39%), Postives = 116/189 (61.38%), Query Frame = 3
Query:    3 TREHHHAIEAIKWGTDYFIKAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYV-LDNADRF---GGITWAITEFSWDVKYAGVQIIASMVN 557
            T++   A++A++W TD+ + AH   +V +++VGD D DH CW+RPE M+  R   +++ ++PGSDVA E        SIVF+  +  YS  LL HAQ+LF F D Y+G    +   ++ YY S +GY DELLWAA WLY AT ++ YL YV ++N   F   G  TW    FSWD K AG Q++ S +N
Sbjct:  138 TKQLDPALDALRWITDFLVNAHPSDNVFYIQVGDPDLDHNCWERPETMSEKRPLTQINTKSPGSDVAAEAAAAMASASIVFKSRDTTYSDSLLQHAQKLFTFADTYKGLASDTYPKLQNYYNS-TGYQDELLWAASWLYHATGDQTYLSYVTVENGKAFADWGRPTW----FSWDDKLAGTQVLLSRLN 321          
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUN16_ARATH (Endoglucanase 16 OS=Arabidopsis thaliana GN=At3g43860 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.627e-39
Identity = 79/180 (43.89%), Postives = 111/180 (61.67%), Query Frame = 3
Query:    3 TREHHHAIEAIKWGTDYFIKAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLDNADRFGGITWAITEFSWDVKYAGVQII 542
            T E  +A  AI+WGTDYF+K  +  + L+V+VGD + DH CW RPE+M T R   ++ ++ PG+++A E        SIVFR ++  Y+  LL+ A+ LF+    ++G YD        +Y S SGY DEL+WAA WLYKAT N  YL Y+     +F  I+  + EFSWD+KYAG QI+
Sbjct:  116 TGELENARAAIRWGTDYFLKCASRKNRLYVQVGDPNADHQCWARPENMKTPRTVLEISDKVPGTEIAAEAAAAFAASSIVFRHVDHKYARRLLNKAKLLFKLAKSHKGTYDGECP----FYCSNSGYNDELIWAATWLYKATRNHLYLSYL-----KFEAISAYVAEFSWDLKYAGAQIL 286          
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUN1_PERAE (Endoglucanase 1 OS=Persea americana GN=CEL1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.257e-38
Identity = 83/179 (46.37%), Postives = 110/179 (61.45%), Query Frame = 3
Query:   18 HAIEAIKWGTDYFIKAHTHP-HVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSI-EVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLDNADRFGGITWAITEFSWDVKYAGVQIIAS 548
            +A  A++W TDY +KA T   + L+V+VG+ + DH CW+RPEDM T R  YKV  +NPGSDVA ET       SIVF   +  YS  LLH A ++FEF D+YRG Y  S+  VV  +Y S SGY DELLW A WL++A+ N +Y+ Y+  N    G      + FSWD K  G +++ S
Sbjct:  114 NARAALRWSTDYLLKASTATSNSLYVQVGEPNADHRCWERPEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASIVFGDSDSSYSTKLLHTAVKVFEFADQYRGSYSDSLGSVVCPFYCSYSGYNDELLWGASWLHRASQNASYMTYIQSNGHTLGADDDDYS-FSWDDKRVGTKVLLS 291          
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUNA_BACPU (Endoglucanase A OS=Bacillus pumilus GN=eglA PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.658e-38
Identity = 76/190 (40.00%), Postives = 110/190 (57.89%), Query Frame = 3
Query:   24 IEAIKWGTDYFIKAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLDNADRFGGITWAIT-EFSWDVKYAGVQIIASMVNNHKEHEQVLER 590
            ++ IKW TDYF+KAHT P+  W +VGDG+ DH  W   E M  +R A+K+DE  PG++VA +T       SI+F++ +  Y+  LL HA+QL+ F D+YRGKY   +   + +Y S SGY+DEL+W  +WLY AT+ E YL   L   + +    W  T   SWD  +   QI+ + +       +  ER
Sbjct:  137 LDQIKWATDYFLKAHTGPNEFWAQVGDGNADHAWWGPAEVMPMNRPAFKIDEHCPGTEVAAQTAAALAAGSIIFKETDASYAAKLLTHAKQLYAFADRYRGKYTDCVTNAQPFYNSWSGYVDELIWGGIWLYLATNEETYLNKALKAVEEWPQ-DWDYTFTMSWDNTFFASQILLARITKENRFIESTER 325          
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUN19_ORYSJ (Endoglucanase 19 OS=Oryza sativa subsp. japonica GN=Os08g0114200 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.240e-38
Identity = 82/177 (46.33%), Postives = 110/177 (62.15%), Query Frame = 3
Query:   18 HAIEAIKWGTDYFIKAHTH-PHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKY-DSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLDNADRFGGITWAITEFSWDVKYAGVQII 542
            +A  A++WG DY +KA T  P  L+V+V D + DH CW+RPEDM T R  Y+V    PGSDVAGET       S+VFR+ +P YS  LLH A Q+F+F D++RG Y DS    V  +Y S SGY DELLW A WL++A+ N +++ YV  N  + G      + FSWD K  G +++
Sbjct:  139 NARAAVRWGADYLLKAATATPGALYVQVADPNQDHRCWERPEDMDTPRSVYRVTADKPGSDVAGETAAALAASSMVFRRADPAYSARLLHAATQVFDFADRHRGSYSDSLASSVCPFYCSYSGYHDELLWGASWLHRASRNASFMSYVEANGMQLGAGDDDYS-FSWDDKRVGTKVL 314          
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUN24_ARATH (Endoglucanase 24 OS=Arabidopsis thaliana GN=At4g39010 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.064e-37
Identity = 78/184 (42.39%), Postives = 113/184 (61.41%), Query Frame = 3
Query:    9 EHHHAIEAIKWGTDYFIKAHTH-PHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEV---VKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLDNADRFGGITWAITEFSWDVKYAGVQIIAS 548
            E  +++ A++W ++Y +K+ +  P+ ++V+VGD   DH CW+RPEDM T R AY V+  NP S+VAGET       SI FR  +P YS  LL +A + F+F D YRG Y S+ ++   V  +Y   +G+ DELLW A WL KAT +E+YL Y+  N + FG     + EF WD K  G+ ++ S
Sbjct:  112 ELRNSLVALRWSSNYLLKSVSQLPNRIFVQVGDPIADHNCWERPEDMDTPRTAYAVNAPNPASEVAGETTAALSAASIAFRSSDPGYSQTLLQNAVKTFQFADMYRGAYSSNDDIKNDVCPFYCDFNGFQDELLWGAAWLRKATGDESYLNYIESNREPFGA-NDNVDEFGWDNKVGGLNVLVS 294          
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUN23_ARATH (Endoglucanase 23 OS=Arabidopsis thaliana GN=At4g39000 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.064e-37
Identity = 77/184 (41.85%), Postives = 111/184 (60.33%), Query Frame = 3
Query:    9 EHHHAIEAIKWGTDYFIKAHTH-PHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSS---IEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLDNADRFGGITWAITEFSWDVKYAGVQIIAS 548
            +  H + A+KW TDY +K  +  P+ ++V VG+   DH CW+RPEDM T R A+ +D   P SD+AGE        SI F++ NP YS +LL+ A Q F++ D +RG Y  +    + V  +Y SV+GY DELLW A WL +AT  ++YL+Y++DN   FG  +    EF WD K  GV ++ +
Sbjct:  108 DFRHNLVAVKWATDYLLKTVSQLPNRIFVHVGEVQPDHDCWERPEDMDTPRTAFALDAPYPASDLAGEIAAALAAASIAFKQANPKYSAILLNKAVQTFQYADSHRGSYTDNPGIKQAVCPFYCSVNGYKDELLWGAAWLRRATGEDSYLRYLVDNGQAFGESS-NYFEFGWDNKVGGVNVLVA 290          
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUN4_BACS5 (Endoglucanase 4 OS=Bacillus sp. (strain KSM-522) PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.097e-37
Identity = 75/190 (39.47%), Postives = 112/190 (58.95%), Query Frame = 3
Query:   24 IEAIKWGTDYFIKAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLDNADRFGGITWAIT-EFSWDVKYAGVQIIASMVNNHKEHEQVLER 590
            ++ IKW TDYF+KAHT P+  W +VGDG+ DH  W   E M  +R A+K+DE  PG++VA +T       SI+F++ +  Y+  LL HA+QL+ F D+YRG+Y   +   + +Y S SGY+DEL+W  +WLY AT+++ YL   L   + +    W  T   SWD  +   QI+ + +   K   +  ER
Sbjct:  118 LDQIKWATDYFLKAHTGPNEFWAQVGDGNADHGWWGPAEVMPMNRPAFKIDEHCPGTEVAAQTAAALAAGSIIFKETDAPYAAKLLTHAKQLYAFADQYRGEYTDCVTNAQPFYNSWSGYIDELIWGGIWLYLATNDQTYLNKALKAVEEWPK-DWDYTFTMSWDNTFFLSQILLARITKEKRFIESTER 306          
The following BLAST results are available for this feature:
BLAST of CX288823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
GUN23_ORYSJ3.909e-4042.62Endoglucanase 23 OS=Oryza sativa subsp. japonica G... [more]
GUN8_ORYSJ5.105e-4044.57Endoglucanase 8 OS=Oryza sativa subsp. japonica GN... [more]
GUN24_ORYSJ2.533e-3943.39Endoglucanase 24 OS=Oryza sativa subsp. japonica G... [more]
GUN16_ARATH9.627e-3943.89Endoglucanase 16 OS=Arabidopsis thaliana GN=At3g43... [more]
GUN1_PERAE1.257e-3846.37Endoglucanase 1 OS=Persea americana GN=CEL1 PE=2 S... [more]
GUNA_BACPU3.658e-3840.00Endoglucanase A OS=Bacillus pumilus GN=eglA PE=1 S... [more]
GUN19_ORYSJ6.240e-3846.33Endoglucanase 19 OS=Oryza sativa subsp. japonica G... [more]
GUN24_ARATH1.064e-3742.39Endoglucanase 24 OS=Arabidopsis thaliana GN=At4g39... [more]
GUN23_ARATH1.064e-3741.85Endoglucanase 23 OS=Arabidopsis thaliana GN=At4g39... [more]
GUN4_BACS53.097e-3739.47Endoglucanase 4 OS=Bacillus sp. (strain KSM-522) P... [more]

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Properties
Property NameValue
Genbank descriptionC02004G09SK IF1 Citrus clementina cDNA clone C02004G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288823 ID=CX288823; Name=CX288823; organism=Citrus clementina; type=EST; length=616bp
GCACGAGGGAGCATCATCATGCAATTGAGGCCATCAAGTGGGGAACTGAT
TATTTCATCAAAGCTCACACTCACCCTCATGTATTATGGGTTGAGGTGGG
TGATGGAGACACCGATCACTACTGTTGGCAGCGGCCGGAAGACATGACGA
CGTCGCGGCGTGCTTACAAAGTAGACGAGAGAAACCCCGGCTCGGATGTC
GCCGGAGAGACGGCAGCGGCAATGGCGGCAGCATCAATTGTGTTTAGGAA
ACTAAACCCACATTACTCTCACCTACTATTGCACCACGCGCAACAGTTGT
TTGAGTTTGGTGACAAGTACAGAGGGAAATACGACAGTAGTATAGAGGTA
GTGAAGGGGTACTATCCGTCGGTTAGTGGATACATGGACGAGTTGTTATG
GGCGGCTGTGTGGCTATACAAGGCAACCGACAACGAGGCGTATTTGAAGT
ACGTGCTTGATAATGCCGATCGTTTTGGTGGGATCACTTGGGCCATTACT
GAATTTAGCTGGGATGTTAAGTACGCTGGCGTTCAAATCATCGCTTCAAT
GGTGAATAATCACAAGGAACACGAGCAAGTTCTTGAACGATACGGTTCGA
AAGCTGAATTTTATCT
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