CX288823

Overview
NameCX288823
Unique NameCX288823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUN4_THEFU (Endoglucanase E-4 OS=Thermomonospora fusca GN=celD PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.044e-33
Identity = 69/138 (50.00%), Postives = 87/138 (63.04%), Query Frame = 3
Query:   33 IKWGTDYFIKAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYL 446
            ++W  DYFIKAH  P+VL+V+VGDGD DH  W   E M   R ++KVD   PGSDVA ET       SIVF   +P Y+  L+ HA+QL+ F D YRG Y   +     +Y S SGY DEL+W A WLYKAT +++YL
Sbjct:  143 LRWVNDYFIKAHPSPNVLYVQVGDGDADHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAKQLYTFADTYRGVYSDCVP-AGAFYNSWSGYQDELVWGAYWLYKATGDDSYL 279          
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUNF_CLOTH (Endoglucanase F OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=celF PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32
Identity = 74/200 (37.00%), Postives = 106/200 (53.00%), Query Frame = 3
Query:   18 HAIEAIKWGTDYFIKAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYL--------KYVLDNADRFGGITWAITEFSWDVKYAGVQIIASMVNNHKEHEQVLERY 593
            + ++ IKW TDYFIK H  P+V + +VGDG  DH  W   E M   R ++KVD  NPGS V  ET       SIVF+  +P Y+  LL HA++LF F D  R   D+     +GYY S SG+ DEL WA++WLY AT +++YL         +  +        +WA     WD K  G  ++ + +     ++Q +E +
Sbjct:  118 YILDNIKWATDYFIKCHPSPNVYYYQVGDGALDHSWWGPAEVMQMPRPSFKVDLTNPGSTVVAETAAAMAASSIVFKPTDPEYAATLLRHAKELFTFADTTRS--DAGYRAAEGYYSSHSGFYDELTWASIWLYLATGDQSYLDKAESYEPHWERERGTTLISYSWA---HCWDNKLYGSLLLLAKITGKSYYKQCIENH 312          
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUN6_DICDI (Endoglucanase OS=Dictyostelium discoideum GN=celA PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.808e-30
Identity = 71/176 (40.34%), Postives = 95/176 (53.98%), Query Frame = 3
Query:   24 IEAIKWGTDYFIKAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYL-KYVLDNADRFGGITWAITEFSWDVKYAGVQIIAS 548
            ++ IK+GTD+ I AHT  +    +VGDG+ DH  W  PEDMT +R  Y +    PG+++A E        SI F+  NP Y+   L HA+ L  FG  YRG Y  SI   + +Y S SGY D+L+W ++WLYKAT +  YL K V D A    G         WD K  G  ++ S
Sbjct:  121 LDTIKYGTDWLIAAHTADNEFAGQVGDGNVDHSWWGPPEDMTMARPTYMLTTEAPGTEIAMEAASALAAASIAFKSSNPTYAATCLAHAKTLHNFGYTYRGVYSDSITNAQAFYNSWSGYKDDLVWGSIWLYKATQDSDYLTKAVADYASGGVGGMAQGNSHDWDNKAPGCCLLLS 296          
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUNZ_CLOSR (Endoglucanase Z OS=Clostridium stercorarium GN=celZ PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.104e-29
Identity = 70/200 (35.00%), Postives = 101/200 (50.50%), Query Frame = 3
Query:   18 HAIEAIKWGTDYFIKAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLDNADRFG--------GITWAITEFSWDVKYAGVQIIASMVNNHKEHEQVLERY 593
            + ++AIKW +DY IK H  P+V + +VGDG  DH  W   E M   R AYKVD  NPGS V  E        ++VF   +P Y+   + HA++L+ F +    K DS      G+Y S SG+ DEL WA VWLY AT +E YL         +G           WA     WD  + G  ++ + +   + +++ +ER+
Sbjct:  118 YLLDAIKWVSDYLIKCHPSPNVFYYQVGDGHLDHSWWGPAEVMQMDRPAYKVDLANPGSTVVAEAAAALASAAVVFADRDPAYAATCIQHAKELYNFAE--ITKSDSGYTAASGFYDSHSGFYDELSWAGVWLYLATGDETYLNKAEQYVAYWGTEPQTNIISYKWA---HCWDDVHYGACLLLAKITGKQIYKEAIERH 312          
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUNA_CALSA (Endoglucanase A OS=Caldocellum saccharolyticum GN=celA PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.012e-28
Identity = 70/200 (35.00%), Postives = 102/200 (51.00%), Query Frame = 3
Query:   18 HAIEAIKWGTDYFIKAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYL---KYVLDNADRFGG-----ITWAITEFSWDVKYAGVQIIASMVNNHKEHEQVLERY 593
            H +  I+W  DYF+K H   +V + +VGDG  DH  W   E M   R ++KV + +PGS V  ET       SIV +  NP  +   L HA+ L+EF +    K DS      GYY S SG+ DEL WAAVWLY AT++  YL   +  + N  +  G       WA     WD  + G  ++ + + +   ++Q++E +
Sbjct:  114 HILNQIEWVNDYFVKCHPSKYVYYYQVGDGGKDHAWWGPAEVMQMERPSFKVTQSSPGSAVVAETAASLAAASIVLKDRNPTKAATYLQHAKDLYEFAEV--TKSDSGYTAANGYYNSWSGFYDELSWAAVWLYLATNDSTYLTKAESYVQNWPKISGSNIIDYKWA---HCWDDVHNGAALLLAKITDKDTYKQIIESH 308          
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUNX_PRUPE (Endoglucanase CX (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.703e-27
Identity = 67/157 (42.68%), Postives = 90/157 (57.32%), Query Frame = 3
Query:  135 PEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSI-EVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLDNADRFGGITWAITEFSWDVKYAGVQII---ASMVNNHKEHEQVLERY 593
            PEDM T R  YKV  +NPGSDVA ET       SIVF+  +P YS  LLH A ++F+F D+YRG Y  SI  VV  +Y S SG+ DELLW A W+++A+ N +YL Y+  N    G      +  SWD K  G +++    S +  H E  Q+ + +
Sbjct:    1 PEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASIVFKDSDPSYSGKLLHTAMKVFDFADRYRGSYSDSIGSVVCPFYCSYSGHHDELLWGASWIHRASQNRSYLVYIKSNGHILGEDDDGFSA-SWDDKETGTKVLLVSKSFLERHVEEFQLYKAH 156          
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUNG_CLOCE (Endoglucanase G OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=celCCG PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.195e-26
Identity = 66/186 (35.48%), Postives = 92/186 (49.46%), Query Frame = 3
Query:   18 HAIEAIKWGTDYFIKAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLDNADRFGGITWA-ITEFSW-----DVKYAGVQIIASMVN 557
            + ++ IKW  DYFIK +  P V + +VGDG  DH  W   E M   R ++KVD   PGS V   T       ++VF+  +P Y+   + HA+ LF+  DK   K D+      GYY S S + D+L WAAVWLY AT++  YL         +G      I  + W     DV Y    ++A + N
Sbjct:  127 YIMDGIKWANDYFIKCNPTPGVYYYQVGDGGKDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAKNLFDMADK--AKSDAGYTAASGYYSS-SSFYDDLSWAAVWLYLATNDSTYLDKAESYVPNWGKEQQTDIIAYKWGQCWDDVHYGAELLLAKLTN 309          
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUN25_ARATH (Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.927e-24
Identity = 74/194 (38.14%), Postives = 93/194 (47.94%), Query Frame = 3
Query:   18 HAIEAIKWGTDYFIKAHTHP----HVLWVEVGDGDTD--------HYCWQRPEDMTTSRRAYKVDERNPG-SDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLD-NADRFGGITWA---ITEFSWDVKYAGVQIIAS 548
            H  E IKWGTDYF+K           L  +VG G+TD        HYCW RPEDM   R    V   N G SD+A E        SIVF+  N  YS  L+H A+ +++FG   RG+Y +       +Y S S Y DE +W   W+Y AT N  YL  +      +  G  W       FSWD K AG Q++ S
Sbjct:  199 HVKELIKWGTDYFLKTFNSTADSIDDLVSQVGSGNTDDGNTDPNDHYCWMRPEDMDYKR---PVTTCNGGCSDLAAEMAAALASASIVFKD-NKEYSKKLVHGAKVVYQFGRTRRGRYSAGTAESSKFYNS-SMYWDEFIWGGAWMYYATGNVTYLNLITQPTMAKHAGAFWGGPYYGVFSWDNKLAGAQLLLS 387          
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUN9_ORYSJ (Endoglucanase 9 OS=Oryza sativa subsp. japonica GN=GLU1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.672e-23
Identity = 72/194 (37.11%), Postives = 95/194 (48.97%), Query Frame = 3
Query:   18 HAIEAIKWGTDYFIK-----AHTHPHVLWVEVGDGDT--------DHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVL-DNADRFGGITWAITE---FSWDVKYAGVQIIAS 548
            H  + IKWG DYF+K     A T   V+ ++VG G T        DHYCW RPED+   R    V E +  SD+A E        SIVF+  N  YS  L+H A  LF+F  + RG+Y +       +Y S S Y DE +W   W+Y AT N +YL+        +  G  W   +   FSWD K  G Q++ S
Sbjct:  201 HIRDTIKWGADYFLKTFNSTADTIDRVV-MQVGSGATSPGSTQPNDHYCWMRPEDIDYPR---PVVECHACSDLAAEMAASLAAASIVFKD-NKAYSQKLVHGATTLFKFARQNRGRYSAGGSDAAKFYNSTS-YWDEFVWGGSWMYLATGNSSYLQLATHPKLAKHAGAYWGGPDYGVFSWDNKLTGAQVLLS 388          
BLAST of CX288823 vs. ExPASy Swiss-Prot
Match: GUN21_ARATH (Endoglucanase 21 OS=Arabidopsis thaliana GN=KOR3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.397e-21
Identity = 70/195 (35.90%), Postives = 94/195 (48.21%), Query Frame = 3
Query:    9 EHHHAIEAIKWGTDYFIKAHTHP----HVLWVEVGDG--------DTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLK-----YVLDNADRFGGITWAITEFSWDVKYAGVQII 542
            E  H  E IKWGTDYF+K         +V+  +VG G          DHYCW RPED+   R   +    +  SD+A E        SIVF+  N  YS  L+H A+ L+ F    R +Y  + +    +Y S S + DELLW   WLY AT N  YL+     ++ + A  FG   +    FSWD K  G Q++
Sbjct:  197 ELEHVKELIKWGTDYFLKTFNSSADNIYVMVEQVGSGVSGRGSELHNDHYCWMRPEDIHYKRTVSQC--YSSCSDLAAEMAAALASASIVFKD-NRLYSKNLVHGAKTLYRFATTSRNRYSQNGKESSKFYNS-SMFEDELLWGGAWLYYATGNVTYLERVTSHHMAEKAGAFGNSPY-YGVFSWDNKLPGAQLL 386          
The following BLAST results are available for this feature:
BLAST of CX288823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
GUN4_THEFU6.044e-3350.00Endoglucanase E-4 OS=Thermomonospora fusca GN=celD... [more]
GUNF_CLOTH1.031e-3237.00Endoglucanase F OS=Clostridium thermocellum (strai... [more]
GUN6_DICDI2.808e-3040.34Endoglucanase OS=Dictyostelium discoideum GN=celA ... [more]
GUNZ_CLOSR3.104e-2935.00Endoglucanase Z OS=Clostridium stercorarium GN=cel... [more]
GUNA_CALSA2.012e-2835.00Endoglucanase A OS=Caldocellum saccharolyticum GN=... [more]
GUNX_PRUPE1.703e-2742.68Endoglucanase CX (Fragment) OS=Prunus persica PE=2... [more]
GUNG_CLOCE4.195e-2635.48Endoglucanase G OS=Clostridium cellulolyticum (str... [more]
GUN25_ARATH3.927e-2438.14Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE... [more]
GUN9_ORYSJ9.672e-2337.11Endoglucanase 9 OS=Oryza sativa subsp. japonica GN... [more]
GUN21_ARATH1.397e-2135.90Endoglucanase 21 OS=Arabidopsis thaliana GN=KOR3 P... [more]

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Properties
Property NameValue
Genbank descriptionC02004G09SK IF1 Citrus clementina cDNA clone C02004G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288823 ID=CX288823; Name=CX288823; organism=Citrus clementina; type=EST; length=616bp
GCACGAGGGAGCATCATCATGCAATTGAGGCCATCAAGTGGGGAACTGAT
TATTTCATCAAAGCTCACACTCACCCTCATGTATTATGGGTTGAGGTGGG
TGATGGAGACACCGATCACTACTGTTGGCAGCGGCCGGAAGACATGACGA
CGTCGCGGCGTGCTTACAAAGTAGACGAGAGAAACCCCGGCTCGGATGTC
GCCGGAGAGACGGCAGCGGCAATGGCGGCAGCATCAATTGTGTTTAGGAA
ACTAAACCCACATTACTCTCACCTACTATTGCACCACGCGCAACAGTTGT
TTGAGTTTGGTGACAAGTACAGAGGGAAATACGACAGTAGTATAGAGGTA
GTGAAGGGGTACTATCCGTCGGTTAGTGGATACATGGACGAGTTGTTATG
GGCGGCTGTGTGGCTATACAAGGCAACCGACAACGAGGCGTATTTGAAGT
ACGTGCTTGATAATGCCGATCGTTTTGGTGGGATCACTTGGGCCATTACT
GAATTTAGCTGGGATGTTAAGTACGCTGGCGTTCAAATCATCGCTTCAAT
GGTGAATAATCACAAGGAACACGAGCAAGTTCTTGAACGATACGGTTCGA
AAGCTGAATTTTATCT
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