CX288834

Overview
NameCX288834
Unique NameCX288834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14880 contig Ccv1_Contig14880:309..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1_MAIZE (Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 3.185e-62
Identity = 112/168 (66.67%), Postives = 132/168 (78.57%), Query Frame = 3 
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+V+VAPPQA EVR+KILFT+LCHTD Y W  K    +FP I GHEA GI+ESVGEGVT+V PGDHV+P +  EC+EC  CKS ++N+C  +R  T  GVM+ D KSRFSINGKPIYHF+GTSTFS+YTV+H   VAKI+PQAPLDKVC+L CG  TGLGA  N AK
Sbjct:   24 IEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQTPVFPRIFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTDRGVMIADGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPQAPLDKVCVLSCGYSTGLGASINVAK 191
[Close]
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH3_SOLTU (Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=ADH3 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 4.160e-62
Identity = 111/168 (66.07%), Postives = 133/168 (79.17%), Query Frame = 3 
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            +E+V VAPPQ  EVR+KIL+T+LCHTD Y W  K    +FP ILGHEAAGIVESVGEGVTE+ PGDHV+P +  EC++C  CKS ++N+C  +R  T  GVM+ND +SRFSINGKPIYHF+GTSTFS+YTVVH   VAKI+P APLDKVC+L CG+ TGLGA  N AK
Sbjct:   25 MEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPVFPRILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRINTDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGATLNVAK 192
[Close]
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH2_SOLTU (Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 4.160e-62
Identity = 111/168 (66.07%), Postives = 133/168 (79.17%), Query Frame = 3 
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            +E+V VAPPQ  EVR+KIL+T+LCHTD Y W  K    +FP ILGHEAAGIVESVGEGVTE+ PGDHV+P +  EC++C  CKS ++N+C  +R  T  GVM+ND +SRFSINGKPIYHF+GTSTFS+YTVVH   VAKI+P APLDKVC+L CG+ TGLGA  N AK
Sbjct:   25 MEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPVFPRILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRINTDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGATLNVAK 192
[Close]
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADHX_RABIT (Alcohol dehydrogenase class-3 OS=Oryctolagus cuniculus GN=ADH5 PE=2 SV=3)

HSP 1 Score: 236.498 bits (602), Expect = 5.433e-62
Identity = 116/168 (69.05%), Postives = 132/168 (78.57%), Query Frame = 3 
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+++VAPP+A EVRIKI  TA+CHTDAYT SG DPEG FP ILGHE AGIVESVGEGVT ++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA  NTAK
Sbjct:   22 IEEIEVAPPKAHEVRIKIFATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTNLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAALNTAK 188
[Close]
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADHX_HUMAN (Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4)

HSP 1 Score: 236.498 bits (602), Expect = 5.433e-62
Identity = 116/168 (69.05%), Postives = 134/168 (79.76%), Query Frame = 3 
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP ILGHE AGIVESVGEGVT+++ GD VIP Y  +C ECKFC + KTNLC K+R   G G +M D  SRF+  GK I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA  NTAK
Sbjct:   22 IEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAK 188
[Close]
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1_TRIRP (Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH1 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 5.433e-62
Identity = 110/168 (65.48%), Postives = 131/168 (77.98%), Query Frame = 3 
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+V+VAPPQAGEVR+KILFT+LCHTD Y W  K    LFP I GHEA GIVESVGEGVT ++PGDH +P +  EC EC  CKS ++N+C  +R  T  GVM+ND KSRFSI G+P++HF+GTSTFS+YTVVH   VAKI+P APLDKVC+L CG+ TGLGA  N AK
Sbjct:   25 IEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCNLLRINTDRGVMINDNKSRFSIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATVNVAK 192
[Close]
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1_SOLTU (Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 5.433e-62
Identity = 111/168 (66.07%), Postives = 133/168 (79.17%), Query Frame = 3 
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            +E+V VAPPQ  EVR+KIL+T+LCHTD Y W  K    +FP ILGHEAAGIVESVGEGVTE+ PGDHV+P +  EC++C  CKS ++N+C  +R  T  GVM+ND +SRFSINGKPIYHF+GTSTFS+YTVVH   VAKI+P APLDKVC+L CG+ TGLGA  N AK
Sbjct:   25 MEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPVFPRILGHEAAGIVESVGEGVTELGPGDHVLPVFTGECKDCAHCKSEESNMCSLLRINTDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGATLNVAK 192
[Close]
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1_PENAM (Alcohol dehydrogenase 1 OS=Pennisetum americanum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 5.433e-62
Identity = 110/168 (65.48%), Postives = 133/168 (79.17%), Query Frame = 3 
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+V+VAPPQA EVR+KIL+T+LCHTD Y W  K    +FP I GHEA GI+ESVGEGVT+V PGDHV+P +  EC+EC  CKS ++N+C  +R  T  GVM+ D KSRFSINGKPIYHF+GTSTFS+YTV+H   VAKI+P+APLDKVC+L CG+ TGLGA  N AK
Sbjct:   24 IEEVEVAPPQAMEVRVKILYTSLCHTDVYFWEAKGQTPVFPRIFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECPHCKSAESNMCDLLRINTVRGVMIGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPEAPLDKVCVLSCGISTGLGASINVAK 191
[Close]
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1_PEA (Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 5.433e-62
Identity = 110/168 (65.48%), Postives = 131/168 (77.98%), Query Frame = 3 
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+V+VAPPQAGEVR+KILFT+LCHTD Y W  K    LFP I GHEA GIVESVGEGVT ++PGDH +P +  EC EC  CKS ++N+C  +R  T  GVM+ND KSRFSI G+P++HF+GTSTFS+YTVVH   VAKI+P APLDKVC+L CG+ TGLGA  N AK
Sbjct:   25 IEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMLNDNKSRFSIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATINVAK 192
[Close]
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 7.096e-62
Identity = 113/168 (67.26%), Postives = 132/168 (78.57%), Query Frame = 3 
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            I ++ VAPP+ GEV +KI  T +CHTDAYT SG DPEGLFP +LGHE AG+V  VGEGVT V+PGDHVIP Y AEC EC FC SGKTNLC  VR   G GV M D  SRF +NG+P+YH+MG STFS+YTVV +VS+AKI+PQA  ++VCLLGCGV TG+GAV NTAK
Sbjct:   17 IVEIDVAPPKKGEVLVKISHTGVCHTDAYTLSGDDPEGLFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECDFCTSGKTNLCVAVRETQGKGV-MPDATSRFFVNGQPLYHYMGCSTFSEYTVVAEVSLAKINPQANAEQVCLLGCGVTTGIGAVHNTAK 183
The following BLAST results are available for this feature:
BLAST of CX288834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
ADH1_MAIZE3.185e-6266.67Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 S... [more]
ADH3_SOLTU4.160e-6266.07Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=AD... [more]
ADH2_SOLTU4.160e-6266.07Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=AD... [more]
ADHX_RABIT5.433e-6269.05Alcohol dehydrogenase class-3 OS=Oryctolagus cunic... [more]
ADHX_HUMAN5.433e-6269.05Alcohol dehydrogenase class-3 OS=Homo sapiens GN=A... [more]
ADH1_TRIRP5.433e-6265.48Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH... [more]
ADH1_SOLTU5.433e-6266.07Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=AD... [more]
ADH1_PENAM5.433e-6265.48Alcohol dehydrogenase 1 OS=Pennisetum americanum G... [more]
ADH1_PEA5.433e-6265.48Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1[more]
FRMA_PASPI7.096e-6267.26S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]

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Properties
Property NameValue
Genbank descriptionC02004H10SK IF1 Citrus clementina cDNA clone C02004H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288834 ID=CX288834; Name=CX288834; organism=Citrus clementina; type=EST; length=513bp
GCACGAGGATTGAGGATGTGCAGGTTGCTCCGCCTCAGGCTGGCGAGGTC
CGAATCAAGATTCTCTTCACTGCTCTCTGCCACACTGATGCTTACACCTG
GAGCGGCAAGGATCCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGG
CTGCTGGGATTGTGGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCA
GGTGATCATGTCATCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTT
TTGCAAGTCTGGAAAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTG
GTGCTGGTGTCATGATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGA
AAGCCTATCTATCACTTCATGGGAACCTCAACATTTAGCCAGTACACAGT
TGTGCATGATGTTAGTGTTGCAAAGATTGACCCACAAGCTCCTTTGGACA
AAGTATGCCTTCTTGGCTGTGGTGTTCCTACTGGTCTTGGAGCAGTTTGG
AACACTGCAAAAG
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