CX288834

Overview
NameCX288834
Unique NameCX288834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL5 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.748e-60
Identity = 109/168 (64.88%), Postives = 133/168 (79.17%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            I ++ VAPP+ GEV IK+  T +CHTDA+T SG DPEG+FP +LGHE AG+V  VGEGVT V+PGDHVIP Y AEC EC+FC+SGKTNLC  VR   G G +M D  +RFS NG+P+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAK
Sbjct:   17 IVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAK 183          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: FRMA_ECOK1 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=frmA PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.748e-60
Identity = 109/168 (64.88%), Postives = 133/168 (79.17%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            I ++ VAPP+ GEV IK+  T +CHTDA+T SG DPEG+FP +LGHE AG+V  VGEGVT V+PGDHVIP Y AEC EC+FC+SGKTNLC  VR   G G +M D  +RFS NG+P+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAK
Sbjct:   17 IVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAK 183          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: FRMA_ECOHS (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=frmA PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.748e-60
Identity = 109/168 (64.88%), Postives = 133/168 (79.17%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            I ++ VAPP+ GEV IK+  T +CHTDA+T SG DPEG+FP +LGHE AG+V  VGEGVT V+PGDHVIP Y AEC EC+FC+SGKTNLC  VR   G G +M D  +RFS NG+P+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAK
Sbjct:   17 IVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAK 183          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: FRMA_ECO57 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O157:H7 GN=frmA PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.748e-60
Identity = 109/168 (64.88%), Postives = 133/168 (79.17%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            I ++ VAPP+ GEV IK+  T +CHTDA+T SG DPEG+FP +LGHE AG+V  VGEGVT V+PGDHVIP Y AEC EC+FC+SGKTNLC  VR   G G +M D  +RFS NG+P+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAK
Sbjct:   17 IVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAK 183          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: FRMA_ECO24 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.748e-60
Identity = 109/168 (64.88%), Postives = 133/168 (79.17%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            I ++ VAPP+ GEV IK+  T +CHTDA+T SG DPEG+FP +LGHE AG+V  VGEGVT V+PGDHVIP Y AEC EC+FC+SGKTNLC  VR   G G +M D  +RFS NG+P+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAK
Sbjct:   17 IVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAK 183          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSJ (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=ADH2 PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 3.894e-60
Identity = 107/168 (63.69%), Postives = 130/168 (77.38%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+V+VAPPQA EVR+KIL+TALCHTD Y W  K    +FP ILGHEA GIVESVGEGVTE+ PGDHV+P +  EC+EC  CKS ++N+C  +R     GVM+ D KSRF+I GKPI+HF+GTSTFS+YTV+H   +AKI+P+APLDKVC+L CG  TG GA  N AK
Sbjct:   24 IEEVEVAPPQAMEVRVKILYTALCHTDVYFWEAKGQTPVFPRILGHEAGGIVESVGEGVTELAPGDHVLPVFTGECKECDHCKSEESNMCDLLRINVDRGVMIGDGKSRFTIKGKPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCILSCGFSTGFGATVNVAK 191          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSI (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. indica GN=ADH2 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 3.894e-60
Identity = 107/168 (63.69%), Postives = 130/168 (77.38%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+V+VAPPQA EVR+KIL+TALCHTD Y W  K    +FP ILGHEA GIVESVGEGVTE+ PGDHV+P +  EC+EC  CKS ++N+C  +R     GVM+ D KSRF+I GKPI+HF+GTSTFS+YTV+H   +AKI+P+APLDKVC+L CG  TG GA  N AK
Sbjct:   24 IEEVEVAPPQAMEVRVKILYTALCHTDVYFWEAKGQTPVFPRILGHEAGGIVESVGEGVTELAPGDHVLPVFTGECKECDHCKSEESNMCDLLRINVDRGVMIGDGKSRFTIKGKPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCILSCGFSTGFGATVNVAK 191          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: FADH_CANMA (S-(hydroxymethyl)glutathione dehydrogenase OS=Candida maltosa GN=FDH1 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 5.086e-60
Identity = 114/167 (68.26%), Postives = 125/167 (74.85%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 509
            IEDV VAPP+  EVRIK+  T +CHTDAYT SG DPEG FP ILGHE AGIVES+GEGVT V+ GDHVI  Y  EC ECKFCKSGKTNLCGK+R   G GV M D  SRF+  GK I HFMG STFSQYTVV D+SV  I+P+A  DK CLLGCG+ TG GA   TA
Sbjct:   26 IEDVTVAPPKRHEVRIKLYDTGVCHTDAYTLSGVDPEGAFPVILGHEGAGIVESIGEGVTNVKVGDHVIALYTPECGECKFCKSGKTNLCGKIRATQGKGV-MPDGTSRFTCKGKEILHFMGCSTFSQYTVVADISVVAINPKAEFDKACLLGCGITTGYGAATITA 191          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH_FRAAN (Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH PE=3 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 5.086e-60
Identity = 107/168 (63.69%), Postives = 129/168 (76.79%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+V+VAPPQA  VR+KIL+T+LCHTD Y W  K    LFP I GHEA GIVESVGEGVT+++ GDHV+P +  EC+EC  CKS ++N+C  +R  T  GVM+ND KSRFSI GKPIYHF+GTSTFS YTV H   +AKI+PQ+PLDKVC+L CG+ TGLGA  N  K
Sbjct:   25 IEEVEVAPPQANVVRVKILYTSLCHTDVYFWEAKGQNPLFPRIYGHEAGGIVESVGEGVTDLKAGDHVLPVFTGECKECDHCKSEESNMCDLLRINTDRGVMLNDGKSRFSIKGKPIYHFVGTSTFSVYTVTHVGCLAKINPQSPLDKVCILSCGISTGLGATLNVRK 192          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADHX_OCTVU (Alcohol dehydrogenase class-3 OS=Octopus vulgaris PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 5.086e-60
Identity = 108/167 (64.67%), Postives = 133/167 (79.64%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 509
            IE+V+VAPP++GEVRIKIL + +CHTDAYT  G DPEG+FP ILGHE AGIVES+GEGVT V+PGD VIP Y  +C ECKFC + KTNLC K+R   G GV M D  +RF+  GK ++HFMG STFS++TVV ++S+AK++P+A LDKVCLLGCG+ TG GA  NTA
Sbjct:   24 IEEVEVAPPKSGEVRIKILHSGVCHTDAYTLEGIDPEGIFPVILGHEGAGIVESIGEGVTSVKPGDTVIPLYVPQCYECKFCLNPKTNLCQKIRVTQGKGV-MPDGTTRFTCKGKEVFHFMGCSTFSEFTVVAEISIAKVNPKAALDKVCLLGCGISTGYGAALNTA 189          
The following BLAST results are available for this feature:
BLAST of CX288834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
FRMA_ECOL51.748e-6064.88S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOK11.748e-6064.88S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOHS1.748e-6064.88S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO571.748e-6064.88S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO241.748e-6064.88S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADH2_ORYSJ3.894e-6063.69Alcohol dehydrogenase 2 OS=Oryza sativa subsp. jap... [more]
ADH2_ORYSI3.894e-6063.69Alcohol dehydrogenase 2 OS=Oryza sativa subsp. ind... [more]
FADH_CANMA5.086e-6068.26S-(hydroxymethyl)glutathione dehydrogenase OS=Cand... [more]
ADH_FRAAN5.086e-6063.69Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH ... [more]
ADHX_OCTVU5.086e-6064.67Alcohol dehydrogenase class-3 OS=Octopus vulgaris ... [more]

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Properties
Property NameValue
Genbank descriptionC02004H10SK IF1 Citrus clementina cDNA clone C02004H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288834 ID=CX288834; Name=CX288834; organism=Citrus clementina; type=EST; length=513bp
GCACGAGGATTGAGGATGTGCAGGTTGCTCCGCCTCAGGCTGGCGAGGTC
CGAATCAAGATTCTCTTCACTGCTCTCTGCCACACTGATGCTTACACCTG
GAGCGGCAAGGATCCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGG
CTGCTGGGATTGTGGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCA
GGTGATCATGTCATCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTT
TTGCAAGTCTGGAAAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTG
GTGCTGGTGTCATGATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGA
AAGCCTATCTATCACTTCATGGGAACCTCAACATTTAGCCAGTACACAGT
TGTGCATGATGTTAGTGTTGCAAAGATTGACCCACAAGCTCCTTTGGACA
AAGTATGCCTTCTTGGCTGTGGTGTTCCTACTGGTCTTGGAGCAGTTTGG
AACACTGCAAAAG
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