CX288834

Overview
NameCX288834
Unique NameCX288834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14880 contig Ccv1_Contig14880:309..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: FRMA_SYNY3 (S-(hydroxymethyl)glutathione dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=frmA PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 6.642e-60
Identity = 112/169 (66.27%), Postives = 131/169 (77.51%), Query Frame = 3
Query:    6 RIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            +I ++ VAPPQ GEV +KI  T +CHTDA+T SG DPEGLFP +LGHE AGIV  VGEGVT VQ GDHVIP Y AEC +C FC+SGKTNLC  VR   G GV M D  SRFS NG+ +YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAK
Sbjct:   16 QIVEIDVAPPQQGEVLVKITHTGVCHTDAFTLSGDDPEGLFPVVLGHEGAGIVVEVGEGVTSVQLGDHVIPLYTAECGKCLFCRSGKTNLCVAVRATQGKGV-MPDGTSRFSYNGQSLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAK 183          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 6.642e-60
Identity = 110/167 (65.87%), Postives = 125/167 (74.85%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 509
            +E++ V  P+A EVRIKI +TA+CHTDAYT SG DPEGLFPC+LGHE AGIVESVG+ V  V+PGDHVI  Y AEC +CKFC SGKTNLCG VR   G GVM +      +  G+ IYHFMG STFS+YTVV DVSV  IDP+APLD  CLLGCGV TG GA   TA
Sbjct:   26 VEEITVDAPKAHEVRIKIEYTAVCHTDAYTLSGSDPEGLFPCVLGHEGAGIVESVGDDVITVKPGDHVIALYTAECGKCKFCTSGKTNLCGAVRATQGKGVMPDGTTRFHNAKGEDIYHFMGCSTFSEYTVVADVSVVAIDPKAPLDAACLLGCGVTTGFGAALKTA 192          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL6 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6 GN=frmA PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.296e-59
Identity = 107/168 (63.69%), Postives = 131/168 (77.98%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            I ++ VAPP+ GEV IK+  T +CHTDA+T SG DPEG+FP +LGHE AG+V  VGEGVT V+PGDHVIP Y   C EC+FC+SGKTNLC  VR   G G +M D  +RFS NG+P+YH+MG STFS+YTVV +VS+AKI+P+A  + VCLLGCGV TG+GAV NTAK
Sbjct:   17 IVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTEXCGECEFCRSGKTNLCVAVRETQGKG-LMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAK 183          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH2_HORVU (Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 9.591e-59
Identity = 106/168 (63.10%), Postives = 129/168 (76.79%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            +E+V+ APPQA EVR KIL+TALCHTD Y W       +FP ILGHEA GIVESVGEGVTE+ PGDHV+P +  EC+EC  C S ++NLC  +R     GVM++D +SRF+I+GKPI+HF+GTSTFS+YTV+H   VAKIDP+APLDKVCLL CG+ TGLGA  N  K
Sbjct:   24 MEEVEDAPPQAMEVRDKILYTALCHTDVYFWEANGQTPVFPRILGHEAGGIVESVGEGVTELVPGDHVLPVFTGECKECAHCMSEESNLCDLLRINVDRGVMIDDGQSRFTIDGKPIFHFLGTSTFSEYTVIHVGCVAKIDPEAPLDKVCLLSCGISTGLGATLNVTK 191          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: FADH1_SCHPO (Probable S-(hydroxymethyl)glutathione dehydrogenase 1 OS=Schizosaccharomyces pombe GN=SPBC1539.07c PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.253e-58
Identity = 107/168 (63.69%), Postives = 129/168 (76.79%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IED+QVAPP+A EVR+K+ ++A+CHTDAYT SG DPEG FP +LGHE AGIVES+GEGV  V+PGDHVI  Y  EC+ECKFC+SGKTNLC K+R   G G +M D  SRFS   K + H+MG S+FSQYTVV D+S+  I   APL  +CLLGCGV TG GAV ++AK
Sbjct:   24 IEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFCRSGKTNLCSKIRETQGRG-LMPDGTSRFSCRDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSICLLGCGVTTGFGAVTHSAK 190          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADHX_MYXGL (Alcohol dehydrogenase class-3 OS=Myxine glutinosa PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.253e-58
Identity = 107/168 (63.69%), Postives = 130/168 (77.38%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            +E+++VAPP+A EVR+K+L TA+CHTDAYT SG DPEG FP +LGHE AGIVESVGEGVT+ +PGD VIP Y  +C ECKFC + KTNLC K+R   G G MM D  SR +  GK +YHFMG STFS+Y VV D+S+ ++ P+AP D+VCLLGCGV TG GA  NTAK
Sbjct:   24 LEEIEVAPPKAHEVRMKVLATAVCHTDAYTLSGVDPEGSFPVVLGHEGAGIVESVGEGVTKFKPGDSVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG-MMPDGTSRLTCRGKSLYHFMGASTFSEYAVVADISLCRVAPEAPPDRVCLLGCGVSTGYGAPLNTAK 190          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: FADH_PICPA (S-(hydroxymethyl)glutathione dehydrogenase OS=Pichia pastoris GN=FLD1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.385e-57
Identity = 104/168 (61.90%), Postives = 125/168 (74.40%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+++V PP+A EVR+K+ FT +CHTDAYT SG D EG FP + GHE AG+VESVGEGV  V+ GD V+  Y  ECRECKFC SGKTNLCGK+R   G G ++ D  SRF   GK ++H+MG S+FSQYTVV D+SV K+  +AP DK CLLGCGV TG GA  NTAK
Sbjct:   24 IEEIEVLPPRAHEVRVKVEFTGVCHTDAYTLSGADAEGSFPVVFGHEGAGVVESVGEGVESVKVGDSVVLLYTPECRECKFCLSGKTNLCGKIRATQGKG-LLPDGTSRFRCKGKDLFHYMGCSSFSQYTVVADISVVKVQDEAPKDKTCLLGCGVTTGYGAAINTAK 190          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 1.809e-57
Identity = 111/167 (66.47%), Postives = 125/167 (74.85%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTA 509
            IE+VQV PP+  EVRIKI+ + +CHTDAYT SGKDPEGLFP ILGHE AGIVESVG  VT VQ GD VI  Y  EC+ CKFCKSGKTNLCG++R   G G +M D  SRFS NG  + HFMG STFS+YTVV D+SV  I+  APLD VCLLGCG+ TG GA   TA
Sbjct:   27 IENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIALYTPECKTCKFCKSGKTNLCGRIRTTQGKG-LMPDGTSRFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITTGYGAATITA 192          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: FRMA_HAEIN (S-(hydroxymethyl)glutathione dehydrogenase OS=Haemophilus influenzae GN=frmA PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 6.873e-57
Identity = 104/169 (61.54%), Postives = 131/169 (77.51%), Query Frame = 3
Query:    6 RIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            +I ++ V  P+ GEV I+   T +CHTDA+T SG DPEG+FP +LGHE AG+V +VGEGV  V+PGDHVIP Y AEC EC+FC+SGKTNLC  VR   G G +M D  +RFS  G+PIYH+MG STFS+Y+VV +VS+AKI+P+A  ++VCLLGCGV TG+GAV NTAK
Sbjct:   25 QIVEIDVEMPRKGEVLIRNTHTGVCHTDAFTLSGSDPEGVFPVVLGHEGAGVVVAVGEGVLSVKPGDHVIPLYTAECGECEFCRSGKTNLCVSVRDTQGKG-LMPDCTTRFSYQGQPIYHYMGCSTFSEYSVVAEVSLAKINPEANHEQVCLLGCGVTTGIGAVHNTAK 192          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADHI_RHOS4 (Alcohol dehydrogenase class-3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=adhI PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 5.446e-54
Identity = 100/169 (59.17%), Postives = 124/169 (73.37%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFS-INGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            I +V +  P+AGEV ++I  T +CHTD +T SG DPEG+FP ILGHE AG+V  VG GVT V+PGDHVIP Y  ECR+C  C S KTNLC  +RG  G G +M D  SRFS ++G PI H+MG STFS YTV+ +++VAK+ P AP DK+C +GCGV TG+GAV NTAK
Sbjct:   17 IMEVNLEGPKAGEVMVEIKATGICHTDEFTLSGADPEGMFPAILGHEGAGVVVEVGPGVTSVKPGDHVIPLYTPECRQCPSCLSQKTNLCTAIRGTQGQG-LMPDGTSRFSMLDGTPILHYMGCSTFSNYTVLPEIAVAKVRPDAPFDKICYIGCGVTTGIGAVINTAK 184          
The following BLAST results are available for this feature:
BLAST of CX288834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
FRMA_SYNY36.642e-6066.27S-(hydroxymethyl)glutathione dehydrogenase OS=Syne... [more]
FADH_YEAST6.642e-6065.87S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
FRMA_ECOL63.296e-5963.69S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADH2_HORVU9.591e-5963.10Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2... [more]
FADH1_SCHPO1.253e-5863.69Probable S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADHX_MYXGL1.253e-5863.69Alcohol dehydrogenase class-3 OS=Myxine glutinosa ... [more]
FADH_PICPA1.385e-5761.90S-(hydroxymethyl)glutathione dehydrogenase OS=Pich... [more]
FADH2_SCHPO1.809e-5766.47Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]
FRMA_HAEIN6.873e-5761.54S-(hydroxymethyl)glutathione dehydrogenase OS=Haem... [more]
ADHI_RHOS45.446e-5459.17Alcohol dehydrogenase class-3 OS=Rhodobacter sphae... [more]

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Properties
Property NameValue
Genbank descriptionC02004H10SK IF1 Citrus clementina cDNA clone C02004H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288834 ID=CX288834; Name=CX288834; organism=Citrus clementina; type=EST; length=513bp
GCACGAGGATTGAGGATGTGCAGGTTGCTCCGCCTCAGGCTGGCGAGGTC
CGAATCAAGATTCTCTTCACTGCTCTCTGCCACACTGATGCTTACACCTG
GAGCGGCAAGGATCCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGG
CTGCTGGGATTGTGGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCA
GGTGATCATGTCATCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTT
TTGCAAGTCTGGAAAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTG
GTGCTGGTGTCATGATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGA
AAGCCTATCTATCACTTCATGGGAACCTCAACATTTAGCCAGTACACAGT
TGTGCATGATGTTAGTGTTGCAAAGATTGACCCACAAGCTCCTTTGGACA
AAGTATGCCTTCTTGGCTGTGGTGTTCCTACTGGTCTTGGAGCAGTTTGG
AACACTGCAAAAG
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