CX288834

Overview
NameCX288834
Unique NameCX288834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14880 contig Ccv1_Contig14880:309..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1_COTJA (Alcohol dehydrogenase 1 OS=Coturnix coturnix japonica GN=ADH1 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.709e-45
Identity = 92/168 (54.76%), Postives = 120/168 (71.43%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            +E+V+VAPP+A EVRIKI+ T +C +D +  +G      FP ILGHEAAG+VESVGE VT ++PGD VIP +  +C EC+ C S K NLC K   ++    +M D  +RF+  GK I+HF+GTSTF++YTVVH+ + AKID  APL+KVCL+GCG  TG GAV  TAK
Sbjct:   23 LEEVEVAPPKAHEVRIKIVATGICRSDDHVVTGALAMP-FPVILGHEAAGVVESVGEKVTLLKPGDAVIPLFVPQCGECRSCLSTKGNLCIKNDLSSSPTGLMADGTTRFTCKGKAIHHFIGTSTFTEYTVVHETAAAKIDSAAPLEKVCLIGCGFSTGYGAVLQTAK 189          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1E_HORSE (Alcohol dehydrogenase E chain OS=Equus caballus PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 3.538e-45
Identity = 93/168 (55.36%), Postives = 118/168 (70.24%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+V+VAPP+A EVRIK++ T +C +D +  SG     L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C+ CK  + N C K   +   G M  D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  TG G+    AK
Sbjct:   24 IEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPL-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ-DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAK 189          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1_RANPE (Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 4.621e-45
Identity = 87/168 (51.79%), Postives = 122/168 (72.62%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+++VAPP+  EVR+KI+ T +C +D +  SG   +  FP ILGHEAAG+VESVGEGVT+ +PGD VIP +  +C EC+ CK+ ++NLC K       GV++ D+ SRF+  GK I++F+ TSTF++YTV+ +++VAKI   APL+KVCL+GCG  TG G+  NT K
Sbjct:   23 IEEIEVAPPKRHEVRVKIVATGICRSDDHVISGALSDMKFPVILGHEAAGVVESVGEGVTKFKPGDKVIPLFVPQCGECRCCKNPESNLCYKNDIGKYDGVLL-DKTSRFTCKGKSIHNFISTSTFTEYTVLDEIAVAKIHEDAPLEKVCLIGCGFSTGYGSAVNTGK 189          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 6.035e-45
Identity = 92/168 (54.76%), Postives = 116/168 (69.05%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+++VAPP+  EVRIKIL T +C TD +   G      FP I+GHEA GIVES+GEGVT V+PGD VIP +  +CREC  C++   NLC +    TG GV+  D  +RF+  GKP++HFM TSTF++YTVV + SVAKID  AP +KVCL+GCG  TG GA   T K
Sbjct:   24 IEEIEVAPPKTKEVRIKILATGICRTDDHVIKGT-MVSKFPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIR-SDITGRGVLA-DGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGK 188          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1A_UROHA (Alcohol dehydrogenase 1A OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 1.345e-44
Identity = 93/170 (54.71%), Postives = 119/170 (70.00%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC--GKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE ++VAPP+A EVRIKIL T +C +D +  SG     L P +LGHEAAG+VESVGEGVT V+PGD VIP +  +C +C  C+S + NLC    +  ATG   +M D  SRF+  GK ++HF+ TS+F++YTVVH+ SV KID  APL+KVCL+GCG  TG GA   TAK
Sbjct:   23 IEQIEVAPPKAHEVRIKILATGICRSDDHVISGAFKMPL-PMVLGHEAAGVVESVGEGVTCVKPGDKVIPLFVPQCGKCSSCRSTRGNLCTSNDLSAATG---LMPDGTSRFTCKGKSLHHFISTSSFTEYTVVHENSVVKIDAAAPLEKVCLIGCGFSTGYGAAVETAK 188          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 2.293e-44
Identity = 92/168 (54.76%), Postives = 117/168 (69.64%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IED++VAPP+A EVR+KIL T +C TD +   G      FP I+GHEA GIVESVGE VT V+PGD VIP +  +CREC  C++ + NLC +    TG GV+  D  +RF+  GKP+ HFM TSTF++YTV+ + SVAKID +AP +K CL+GCG  TG GA   TAK
Sbjct:   24 IEDIEVAPPKAKEVRVKILATGICGTDDHVIKGT-MVSKFPVIVGHEAVGIVESVGEEVTTVRPGDKVIPLFLPQCRECNPCRNPEGNLCIR-SDLTGRGVLA-DGTTRFTCKGKPVQHFMNTSTFTEYTVLDESSVAKIDAEAPPEKACLIGCGFSTGYGAAVKTAK 188          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH7_MOUSE (Alcohol dehydrogenase class 4 mu/sigma chain OS=Mus musculus GN=Adh7 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.995e-44
Identity = 90/168 (53.57%), Postives = 116/168 (69.05%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+++VAPP+A EVR+KIL T +C TD +   G      FP I+GHEA G+VESVGEGVT V+PGD VIP +  +CREC  C + + NLC +    TG GV+  D  +RF+  GKP+ HFM TSTF++YTV+ + SVAK+D  AP +K CL+GCG  TG GA   TAK
Sbjct:   24 IEEIEVAPPKAKEVRVKILATGICRTDDHIIKGS-MVSKFPVIVGHEAVGVVESVGEGVTTVRPGDKVIPLFLPQCRECNACLNPEGNLCIR-SDLTGCGVLA-DGTTRFTCKGKPVQHFMNTSTFTEYTVLDESSVAKVDGAAPPEKACLIGCGFSTGYGAAVKTAK 188          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1S_HORSE (Alcohol dehydrogenase S chain OS=Equus caballus PE=1 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 3.912e-44
Identity = 91/168 (54.17%), Postives = 117/168 (69.64%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+V+VAPP+A EVRIK++   +C +D +  SG     L P I GHEAAGIVES+GEGVT V+PGD VIP +  +C +C  CK  + NLC  ++  +     M D  SRF+  GKPI+HF+GTSTFSQYTVV ++SVAKID  +PL+KVCL+GCG  TG G+    AK
Sbjct:   24 IEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVAPL-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLC--LKNLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGSAVKVAK 188          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1A_PONAB (Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A PE=2 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 5.109e-44
Identity = 93/168 (55.36%), Postives = 117/168 (69.64%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+V+VAPP+A EVRIK++   +C TD +  SG     L P ILGHEAAGIVESVGEGVT V+PGD VIP    +C +C+ CK+ ++N C K   +   G +  D  SRF+  GKPI+HF+G STFSQYTVV + +VAKID  +PL KVCL+GCG  TG G+  N AK
Sbjct:   24 IEEVEVAPPKAQEVRIKMVAVGICGTDDHVVSGTMVTPL-PAILGHEAAGIVESVGEGVTTVKPGDKVIPLAVPQCGKCRICKNPESNYCLKNDVSNPQGTLQ-DGTSRFTCRGKPIHHFLGISTFSQYTVVDENAVAKIDAASPLAKVCLIGCGFSTGYGSAVNVAK 189          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 8.715e-44
Identity = 88/168 (52.38%), Postives = 114/168 (67.86%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+V+VAPP+A EVRIK++ T LC T+      K  + L+P ILGHE AGIVES+GEGV+ V+PGD VI  +  +C EC  C + + N C  ++       +M+D  SRF+  GK IYHF  TSTF +YTV+ ++SVAKID  APL+KVCL+ CG  TG GA  NTAK
Sbjct:   24 IEEVEVAPPKAKEVRIKVVATGLCGTEMKVLGSKHLDLLYPTILGHEGAGIVESIGEGVSTVKPGDKVITLFLPQCGECTSCLNSEGNFC--IQFKQSETQLMSDGTSRFTCKGKSIYHFGNTSTFCEYTVIKEISVAKIDAVAPLEKVCLISCGFSTGFGAAINTAK 189          
The following BLAST results are available for this feature:
BLAST of CX288834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
ADH1_COTJA2.709e-4554.76Alcohol dehydrogenase 1 OS=Coturnix coturnix japon... [more]
ADH1E_HORSE3.538e-4555.36Alcohol dehydrogenase E chain OS=Equus caballus PE... [more]
ADH1_RANPE4.621e-4551.79Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1[more]
ADH7_HUMAN6.035e-4554.76Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]
ADH1A_UROHA1.345e-4454.71Alcohol dehydrogenase 1A OS=Uromastyx hardwickii P... [more]
ADH7_RAT2.293e-4454.76Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]
ADH7_MOUSE2.995e-4453.57Alcohol dehydrogenase class 4 mu/sigma chain OS=Mu... [more]
ADH1S_HORSE3.912e-4454.17Alcohol dehydrogenase S chain OS=Equus caballus PE... [more]
ADH1A_PONAB5.109e-4455.36Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A ... [more]
ADH6_PONAB8.715e-4452.38Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]

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Properties
Property NameValue
Genbank descriptionC02004H10SK IF1 Citrus clementina cDNA clone C02004H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288834 ID=CX288834; Name=CX288834; organism=Citrus clementina; type=EST; length=513bp
GCACGAGGATTGAGGATGTGCAGGTTGCTCCGCCTCAGGCTGGCGAGGTC
CGAATCAAGATTCTCTTCACTGCTCTCTGCCACACTGATGCTTACACCTG
GAGCGGCAAGGATCCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGG
CTGCTGGGATTGTGGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCA
GGTGATCATGTCATCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTT
TTGCAAGTCTGGAAAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTG
GTGCTGGTGTCATGATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGA
AAGCCTATCTATCACTTCATGGGAACCTCAACATTTAGCCAGTACACAGT
TGTGCATGATGTTAGTGTTGCAAAGATTGACCCACAAGCTCCTTTGGACA
AAGTATGCCTTCTTGGCTGTGGTGTTCCTACTGGTCTTGGAGCAGTTTGG
AACACTGCAAAAG
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