CX288834

Overview
NameCX288834
Unique NameCX288834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14880 contig Ccv1_Contig14880:309..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH6_HUMAN (Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 8.715e-44
Identity = 88/168 (52.38%), Postives = 114/168 (67.86%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+V+VAPP+A EVRIK++ T LC T+      K  + L+P ILGHE AGIVES+GEGV+ V+PGD VI  +  +C EC  C + + N C  ++       +M+D  SRF+  GK IYHF  TSTF +YTV+ ++SVAKID  APL+KVCL+ CG  TG GA  NTAK
Sbjct:   24 IEEVEVAPPKAKEVRIKVVATGLCGTEMKVLGSKHLDLLYPTILGHEGAGIVESIGEGVSTVKPGDKVITLFLPQCGECTSCLNSEGNFC--IQFKQSKTQLMSDGTSRFTCKGKSIYHFGNTSTFCEYTVIKEISVAKIDAVAPLEKVCLISCGFSTGFGAAINTAK 189          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1_MOUSE (Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 8.715e-44
Identity = 90/168 (53.57%), Postives = 116/168 (69.05%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IED++VAPP+A EVRIK++ T +C +D +  SG     L P +LGHE AGIVESVGEGVT V+PGD VIP +  +C EC+ CK  ++N C +       G +  +  SRFS  GK I++F+ TSTFSQYTVV D++VAKID  +PLDKVCL+GCG  TG G+    AK
Sbjct:   24 IEDIEVAPPKAHEVRIKMVATGVCRSDDHVVSGTLVTPL-PAVLGHEGAGIVESVGEGVTCVKPGDKVIPLFSPQCGECRICKHPESNFCSRSDLLMPRGTL-REGTSRFSCKGKQIHNFISTSTFSQYTVVDDIAVAKIDGASPLDKVCLIGCGFSTGYGSAVKVAK 189          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1_ALLMI (Alcohol dehydrogenase 1 OS=Alligator mississippiensis PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 8.715e-44
Identity = 91/169 (53.85%), Postives = 117/169 (69.23%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGA-GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+++VAPP+A EVRIKIL T +C +D +  +G     L P ILGHEAAG+VES GEGVT ++PGD VIP +  +C EC  C     NLC  +R   G+   +M D  SRF+  GK I+HF+GTSTF++YTVVH+ +VA+ID  APL+KVCL+GCG  TG GA    AK
Sbjct:   23 IEEIEVAPPKAHEVRIKILATGICRSDDHVTAGLLTMPL-PMILGHEAAGVVESTGEGVTSLKPGDKVIPLFVPQCGECMPCLKSNGNLC--IRNDLGSPSGLMADGTSRFTCKGKDIHHFIGTSTFTEYTVVHETAVARIDAAAPLEKVCLIGCGFSTGYGAAVKDAK 188          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1A_MACMU (Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1A PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 8.715e-44
Identity = 92/168 (54.76%), Postives = 116/168 (69.05%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IEDV+VAPP+A EVRIK++   +C TD +  SG     L P ILGHEAAGIVESVGEGVT V+PGD VIP    +C +C+ CK+ + N C K   +   G +  D  SRF+  GKPI+HF+G STFSQYTVV + +VAKID  +P++KVCL+GCG  TG G+    AK
Sbjct:   24 IEDVEVAPPKAYEVRIKMVTVGICGTDDHVVSGTMVTPL-PVILGHEAAGIVESVGEGVTTVEPGDKVIPLALPQCGKCRICKTPERNYCLKNDVSNPRGTLQ-DGTSRFTCRGKPIHHFLGVSTFSQYTVVDENAVAKIDAASPMEKVCLIGCGFSTGYGSAVKVAK 189          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1_GEOBU (Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH1 PE=2 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.138e-43
Identity = 88/168 (52.38%), Postives = 116/168 (69.05%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+V+VAPP+A EVRIKI+ T +C +D +  +G     L P ILGHEA GIVES+GEGVT V+PGD VIP +  +C +C+ CK  ++NLC         G +M D  SRF+  GKPI+HF+G +TFS+YTVV ++SV KID  +PL+KVCL+GCG  TG G+     K
Sbjct:   24 IEEVEVAPPKAYEVRIKIVATGICRSDDHVVNGSIITPL-PAILGHEAGGIVESIGEGVTTVKPGDKVIPLFVPQCGKCRACKHPESNLCKHGDLGRAQGTLM-DGTSRFTCKGKPIHHFLGVTTFSEYTVVSEISVTKIDATSPLEKVCLIGCGFSTGYGSAVKVGK 189          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1_GEOAT (Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH1 PE=2 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.138e-43
Identity = 88/168 (52.38%), Postives = 116/168 (69.05%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+V+VAPP+A EVRIKI+ T +C +D +  +G     L P ILGHEA GIVES+GEGVT V+PGD VIP +  +C +C+ CK  ++NLC         G +M D  SRF+  GKPI+HF+G +TFS+YTVV ++SV KID  +PL+KVCL+GCG  TG G+     K
Sbjct:   24 IEEVEVAPPKAYEVRIKIVATGICRSDDHVVNGSIITPL-PAILGHEAGGIVESIGEGVTTVKPGDKVIPLFVPQCGKCRACKHPESNLCTHGDLGRAQGTLM-DGTSRFTCKGKPIHHFLGVTTFSEYTVVSEISVTKIDAASPLEKVCLIGCGFSTGYGSAVKVGK 189          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 1.487e-43
Identity = 90/168 (53.57%), Postives = 117/168 (69.64%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+V+VAPP+A EVRIK++   +C +D +  SG     L P ILGHEAAGIVESVGEGVT V+PGD VIP +  +C +C+ CK+ ++N C K       G +  D   RF+ +GKPI+HF+G STFSQYTVV + +VAKID  +PL+KVCL+GCG  TG G+    AK
Sbjct:   24 IEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTPL-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPRGTLQ-DGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAK 189          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1B_UROHA (Alcohol dehydrogenase 1B OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 1.487e-43
Identity = 88/168 (52.38%), Postives = 115/168 (68.45%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            I +++VAPP+A EVRIKIL + +C +D +  SG      FP ILGHEAAG+VESVGEGVT ++PGD VIP +  +C EC  C+  + N+C K       G++  D  SRF+  GKP+YHF+ T TF++YTV  + SV KID  APL+KVCL+GCG  TG GA  N+AK
Sbjct:   23 IVEIEVAPPKAHEVRIKILASGICRSDDHVLSGALKVN-FPIILGHEAAGVVESVGEGVTSMKPGDKVIPIFLPQCGECNSCRHPRGNVCKKSELGPFTGLLY-DGTSRFTYQGKPVYHFVRTGTFTEYTVAPEDSVVKIDASAPLEKVCLIGCGFSTGYGAAINSAK 188          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH1A_HUMAN (Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 2.536e-43
Identity = 92/168 (54.76%), Postives = 117/168 (69.64%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            IE+V+VAPP+A EVRIK++   +C TD +  SG     L P ILGHEAAGIVESVGEGVT V+PGD VIP    +C +C+ CK+ ++N C K   +   G +  D  SRF+   KPI+HF+G STFSQYTVV + +VAKID  +PL+KVCL+GCG  TG G+  N AK
Sbjct:   24 IEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTMVTPL-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSNPQGTLQ-DGTSRFTCRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAK 189          
BLAST of CX288834 vs. ExPASy Swiss-Prot
Match: ADH8_RANPE (NADP-dependent alcohol dehydrogenase OS=Rana perezi GN=ADH8 PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 3.312e-43
Identity = 90/168 (53.57%), Postives = 115/168 (68.45%), Query Frame = 3
Query:    9 IEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAK 512
            +E + VAPP+A EVRIKIL + +C +D+       P   FP ILGHEA G+VES+G GVT V+PGD VIP +  +C  C+ CKS  +N C K       G +M D  SRF+  GKPIY+ +GTSTF++YTVV D++VAKIDP+APL+  CL+GCG  TG GA  NTAK
Sbjct:   24 LETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSK-FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTG-LMADMTSRFTCRGKPIYNLVGTSTFTEYTVVADIAVAKIDPKAPLES-CLIGCGFATGYGAAVNTAK 188          
The following BLAST results are available for this feature:
BLAST of CX288834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
ADH6_HUMAN8.715e-4452.38Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE... [more]
ADH1_MOUSE8.715e-4453.57Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE... [more]
ADH1_ALLMI8.715e-4453.85Alcohol dehydrogenase 1 OS=Alligator mississippien... [more]
ADH1A_MACMU8.715e-4454.76Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1... [more]
ADH1_GEOBU1.138e-4352.38Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH... [more]
ADH1_GEOAT1.138e-4352.38Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH... [more]
ADH1G_HUMAN1.487e-4353.57Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]
ADH1B_UROHA1.487e-4352.38Alcohol dehydrogenase 1B OS=Uromastyx hardwickii P... [more]
ADH1A_HUMAN2.536e-4354.76Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A ... [more]
ADH8_RANPE3.312e-4353.57NADP-dependent alcohol dehydrogenase OS=Rana perez... [more]

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Properties
Property NameValue
Genbank descriptionC02004H10SK IF1 Citrus clementina cDNA clone C02004H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288834 ID=CX288834; Name=CX288834; organism=Citrus clementina; type=EST; length=513bp
GCACGAGGATTGAGGATGTGCAGGTTGCTCCGCCTCAGGCTGGCGAGGTC
CGAATCAAGATTCTCTTCACTGCTCTCTGCCACACTGATGCTTACACCTG
GAGCGGCAAGGATCCTGAAGGTCTCTTCCCTTGTATCCTAGGTCATGAGG
CTGCTGGGATTGTGGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCAACCA
GGTGATCATGTCATCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTT
TTGCAAGTCTGGAAAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTG
GTGCTGGTGTCATGATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGA
AAGCCTATCTATCACTTCATGGGAACCTCAACATTTAGCCAGTACACAGT
TGTGCATGATGTTAGTGTTGCAAAGATTGACCCACAAGCTCCTTTGGACA
AAGTATGCCTTCTTGGCTGTGGTGTTCCTACTGGTCTTGGAGCAGTTTGG
AACACTGCAAAAG
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