CX288836

Overview
NameCX288836
Unique NameCX288836
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length572
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288836_ssr15 microsatellite CX288836_ssr15:15..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig853 contig Ccv1_Contig853:34..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS4_NITMS (30S ribosomal protein S4P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.016e-20
Identity = 59/150 (39.33%), Postives = 86/150 (57.33%), Query Frame = 2
Query:   95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS 544
            + ++KP+RP   E    EL+ +G +GLR KRELW+    LSR+R+ AR LL L  +   R  +   L++ + R G L  S   LD VL LT  + L RRLQT+V K    K+ + AR  +   HI +G + V+IPS+ V V+ +  I F+
Sbjct:    9 RVWRKPKRPLNYELKMEELKTLGTFGLRTKRELWKAHTELSRVRHQARSLLAL--RQEVRAEKEPILMKSLARIG-LVSSDATLDDVLNLTANDLLSRRLQTIVTKKLGFKTPYQARQAVIHGHIMIGERKVDIPSYTVTVEEENSIHFA 155          
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS4_NANEQ (30S ribosomal protein S4P OS=Nanoarchaeum equitans GN=rps4p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.016e-20
Identity = 59/154 (38.31%), Postives = 90/154 (58.44%), Query Frame = 2
Query:   95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 556
            + ++ P  P++K+RL  E RL+ EYGL+ KRELW  +    + R  AR L            E E  L ++ + G L E+  +LD VL LTV++ LERRLQT++ + G+AK++  AR  I   HI V  ++V+ PS++V+ + +  IEF   SP
Sbjct:    6 RKWEGPSHPWQKQRLIIEKRLMKEYGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDISEEKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKEEEDKIEFVPFSP 158          
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS4_METBU (30S ribosomal protein S4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps4p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.016e-20
Identity = 57/157 (36.31%), Postives = 88/157 (56.05%), Query Frame = 2
Query:   95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNP---RRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 556
            K++  P+ P++ ER+ +E+ LV +YGLR KRELW+    L R R  AR LL    ++        E + LL ++ R+  L+   N +D VL L  E  LERRLQT V + G+A++   AR  I   HI +  + V +P  +V  + + ++E+  TSP
Sbjct:    9 KSYDTPQHPWQAERMASEVELVKKYGLRNKRELWKSLSVLRRFRGDARRLLAESAESDLIGHSKTEADQLLTKLIRFSILKSDSN-IDDVLGLQTEAILERRLQTQVHRLGLARTARQARQFITHGHIAIDGKRVTVPGMMVTREQEMNVEYYGTSP 164          
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS4_METAC (30S ribosomal protein S4P OS=Methanosarcina acetivorans GN=rps4p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.016e-20
Identity = 55/160 (34.38%), Postives = 88/160 (55.00%), Query Frame = 2
Query:   95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 556
            K+++ P+ P+++ R+  E++LV  YGLR K+E+W+    L   R+ AR LL           EG      E +L ++ RYG ++   N +D +L+L  EN LERRLQT V + G+A+++  AR  I   HI +  +   IP  +V  + + HI +   SP
Sbjct:    9 KSYETPKHPWQEARMATEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAHVASGQEGGLEGHYRTQSEEILSKLIRYGIIKSDAN-IDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGNSP 167          
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS4_HALSA (30S ribosomal protein S4P OS=Halobacterium salinarium GN=rps4p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.939e-20
Identity = 58/153 (37.91%), Postives = 81/153 (52.94%), Query Frame = 2
Query:   95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 553
            K ++ P  PY+ ER+  E  L+  YGL+ K ELWR Q  L   R  AR LL            GE  + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++  AR  +   H+ V    V  PS+ V V  +  + F  TS
Sbjct:    9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155          
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS4_HALS3 (30S ribosomal protein S4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.939e-20
Identity = 58/153 (37.91%), Postives = 81/153 (52.94%), Query Frame = 2
Query:   95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 553
            K ++ P  PY+ ER+  E  L+  YGL+ K ELWR Q  L   R  AR LL            GE  + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++  AR  +   H+ V    V  PS+ V V  +  + F  TS
Sbjct:    9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155          
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS4_CENSY (30S ribosomal protein S4P OS=Cenarchaeum symbiosum GN=rps4p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.776e-20
Identity = 59/155 (38.06%), Postives = 89/155 (57.42%), Query Frame = 2
Query:   95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 559
            + ++KP+RP+  +    ELR +G +GLR KRELW+    LSR+RN AR LL L ++   R  +   LLR + R G + +  + LD VL L V + L RRLQT+V K     + + AR  +   HI +  ++V IPS+ V V+ +  I+ +  S F
Sbjct:    9 RMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQEVRER--KEPVLLRSLARIGLVGKDAS-LDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDRVVTIPSYTVYVEEEGDIKLTGGSAF 160          
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.335e-19
Identity = 43/50 (86.00%), Postives = 49/50 (98.00%), Query Frame = 2
Query:  422 AKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 571
            AKS+HHARVLIRQRHIRVGRQ+VN+PSF+VR+DSQKHI+FSL SPFGGGR
Sbjct:    1 AKSVHHARVLIRQRHIRVGRQVVNVPSFMVRLDSQKHIDFSLISPFGGGR 50          
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS4_HALWD (30S ribosomal protein S4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19
Identity = 60/156 (38.46%), Postives = 81/156 (51.92%), Query Frame = 2
Query:   95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE--GEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 556
            K ++ P  PY+ ER+  E  L+G YGL+ K ELWR Q  L   R  AR L+  + +    + E  GE  L R+ RYG L  + + +  VL L V + LERRLQT+V++ G+A +   AR  I   HI V    V  PS +V       I F   SP
Sbjct:    8 KRYETPNHPYQGERIAQEGDLLGRYGLKNKEELWRTQSELREYRREARRLIG-EAQGDVSVAEALGEEFLDRLRRYGIL-SADDDISKVLGLDVSDILERRLQTIVYRQGLASTPKQARQFIVHEHITVNGARVTRPSKMVEETEANAIAFDENSP 161          
BLAST of CX288836 vs. ExPASy Swiss-Prot
Match: RS4_HALMA (30S ribosomal protein S4P OS=Haloarcula marismortui GN=rps4p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19
Identity = 58/149 (38.93%), Postives = 79/149 (53.02%), Query Frame = 2
Query:   95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEF 541
            K ++ P  P++ ER+  E  L+G YGL+ K ELWR Q  L   R  AR LL    ++     E E  L R+ RYG L E Q++LD VL+L V + LERRLQT+V++ G A +   AR  I   HI +    V  P   V    +  + F
Sbjct:    8 KFYETPNHPFQGERIADEANLIGRYGLKNKEELWRAQSELRGYRREARKLLGSAGEHET---ESEEFLARLKRYGILNE-QDQLDDVLSLDVTDVLERRLQTVVYRKGYANTPEQARQFIVHGHIVLDDARVTRPGMTVETAVESSVGF 152          
The following BLAST results are available for this feature:
BLAST of CX288836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RS4_NITMS3.016e-2039.3330S ribosomal protein S4P OS=Nitrosopumilus mariti... [more]
RS4_NANEQ3.016e-2038.3130S ribosomal protein S4P OS=Nanoarchaeum equitans... [more]
RS4_METBU3.016e-2036.3130S ribosomal protein S4P OS=Methanococcoides burt... [more]
RS4_METAC3.016e-2034.3830S ribosomal protein S4P OS=Methanosarcina acetiv... [more]
RS4_HALSA3.939e-2037.9130S ribosomal protein S4P OS=Halobacterium salinar... [more]
RS4_HALS33.939e-2037.9130S ribosomal protein S4P OS=Halobacterium salinar... [more]
RS4_CENSY8.776e-2038.0630S ribosomal protein S4P OS=Cenarchaeum symbiosum... [more]
RS9_TOBAC3.335e-1986.0040S ribosomal protein S9 (Fragment) OS=Nicotiana t... [more]
RS4_HALWD5.688e-1938.4630S ribosomal protein S4P OS=Haloquadratum walsbyi... [more]
RS4_HALMA5.688e-1938.9330S ribosomal protein S4P OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionC02006A01SK IF1 Citrus clementina cDNA clone C02006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288836 ID=CX288836; Name=CX288836; organism=Citrus clementina; type=EST; length=572bp
TTTACAAAGATCGCAGAGAGAGAGAGAGAGAGAGTGAGGGTAGCACCAGC
GGCGCGCAAAGATGGTGCACGTTTCATTCTACCGCAACTATGGGAAAACC
TTCAAGAAGCCAAGACGTCCCTATGAGAAGGAGCGATTGGATGCTGAGTT
GAGGCTTGTGGGAGAGTATGGGCTTCGCTGCAAGAGGGAACTCTGGAGGG
TTCAATATGCATTGAGCCGCATCCGAAATGCTGCGAGGGATCTTCTCACT
CTCGATGAGAAGAACCCACGTCGTATTTTCGAGGGTGAGGCCCTTCTCAG
GAGGATGCACAGGTACGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGATT
ATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTCCAGACC
CTTGTGTTCAAGAGTGGCATGGCTAAGTCAATTCACCATGCTCGAGTGCT
CATCAGGCAGAGGCACATTAGGGTTGGAAGGCAGCTTGTCAACATTCCCT
CATTTGTAGTGAGGGTTGATTCCCAGAAGCACATTGAATTCTCACTCACA
AGTCCATTCGGAGGTGGGCGCC
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