CX288840

Overview
NameCX288840
Unique NameCX288840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_BACAN (Uracil phosphoribosyltransferase OS=Bacillus anthracis GN=upp PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.509e-31
Identity = 74/165 (44.85%), Postives = 106/165 (64.24%), Query Frame = 2
Query:    8 LPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            LP    EI++P+  A+ + I  ++ + +IPILRAGL +V+    ++PA K  H+G+ RD +TLQP  Y  KLP    E   I V+DPMLATGG+   A+N +K+ G   KQIK++  VAAP  ++ + E  P + +Y   +D  +ND G++VPGLGDAGDR FGT
Sbjct:   48 LPLKDIEIETPVSKATTKVIAGKK-LGLIPILRAGLGMVDGILKLIPAAKVGHVGLYRDPKTLQPVEYYVKLPTDVEERDFI-VLDPMLATGGSAAEAINSLKKRGA--KQIKLMCIVAAPEGVKVVQEEHPDVDIYVAALDEKLNDHGYVVPGLGDAGDRLFGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_BACAH (Uracil phosphoribosyltransferase OS=Bacillus thuringiensis (strain Al Hakam) GN=upp PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.509e-31
Identity = 74/165 (44.85%), Postives = 106/165 (64.24%), Query Frame = 2
Query:    8 LPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            LP    EI++P+  A+ + I  ++ + +IPILRAGL +V+    ++PA K  H+G+ RD +TLQP  Y  KLP    E   I V+DPMLATGG+   A+N +K+ G   KQIK++  VAAP  ++ + E  P + +Y   +D  +ND G++VPGLGDAGDR FGT
Sbjct:   48 LPLEDIEIETPVSKATTKVIAGKK-LGLIPILRAGLGMVDGILKLIPAAKVGHVGLYRDPKTLQPVEYYVKLPTDVEERDFI-VLDPMLATGGSAAEAINSLKKRGA--KQIKLMCIVAAPEGVKVVQEEHPDVDIYVAALDEKLNDHGYVVPGLGDAGDRLFGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_BACAC (Uracil phosphoribosyltransferase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=upp PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.509e-31
Identity = 74/165 (44.85%), Postives = 106/165 (64.24%), Query Frame = 2
Query:    8 LPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            LP    EI++P+  A+ + I  ++ + +IPILRAGL +V+    ++PA K  H+G+ RD +TLQP  Y  KLP    E   I V+DPMLATGG+   A+N +K+ G   KQIK++  VAAP  ++ + E  P + +Y   +D  +ND G++VPGLGDAGDR FGT
Sbjct:   48 LPLKDIEIETPVSKATTKVIAGKK-LGLIPILRAGLGMVDGILKLIPAAKVGHVGLYRDPKTLQPVEYYVKLPTDVEERDFI-VLDPMLATGGSAAEAINSLKKRGA--KQIKLMCIVAAPEGVKVVQEEHPDVDIYVAALDEKLNDHGYVVPGLGDAGDRLFGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_BACAA (Uracil phosphoribosyltransferase OS=Bacillus anthracis (strain A0248) GN=upp PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.509e-31
Identity = 74/165 (44.85%), Postives = 106/165 (64.24%), Query Frame = 2
Query:    8 LPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            LP    EI++P+  A+ + I  ++ + +IPILRAGL +V+    ++PA K  H+G+ RD +TLQP  Y  KLP    E   I V+DPMLATGG+   A+N +K+ G   KQIK++  VAAP  ++ + E  P + +Y   +D  +ND G++VPGLGDAGDR FGT
Sbjct:   48 LPLKDIEIETPVSKATTKVIAGKK-LGLIPILRAGLGMVDGILKLIPAAKVGHVGLYRDPKTLQPVEYYVKLPTDVEERDFI-VLDPMLATGGSAAEAINSLKKRGA--KQIKLMCIVAAPEGVKVVQEEHPDVDIYVAALDEKLNDHGYVVPGLGDAGDRLFGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_PSEHT (Uracil phosphoribosyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=upp PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.807e-31
Identity = 75/166 (45.18%), Postives = 107/166 (64.46%), Query Frame = 2
Query:    8 LPTVSGEIQSPMGVA-SVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            LP    EI S  G   +V+ I  ++ + V+PILRAGL +++    +LPA K   +G+ R+EETL+P  Y  KL     E   + V+DPMLATGGT++A ++++K+ G   K+IKVI  VAAP  ++K     P + +YT  +D  +NDKG+IVPGLGDAGD+ FGT
Sbjct:   47 LPLEDNEITSWDGTKLNVQHIKGKK-ITVVPILRAGLGMMDGVMQLLPAAKVSVVGLERNEETLEPIPYFEKLVSNINERLSL-VIDPMLATGGTMIATIDMLKKAGC--KEIKVIVLVAAPEGVEKTLAAHPDVEIYTASVDSHLNDKGYIVPGLGDAGDKIFGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_LACS1 (Uracil phosphoribosyltransferase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=upp PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.807e-31
Identity = 69/165 (41.82%), Postives = 107/165 (64.85%), Query Frame = 2
Query:    8 LPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            +P    E+++P+  A+ + +  ++ V V+PILRAG+ +V+    ++PA K  H+G+ RDEETLQP  Y  K+P+   E   + +VDPMLATGG+ + A++ +K+ G   K IK +  VAAP  ++   E  P + +Y+  +D  +N+ G+IVPGLGDAGDR FGT
Sbjct:   48 MPLEDVEVETPITKATTKRLAGKK-VVVVPILRAGIGMVDGILELIPAAKVGHIGMYRDEETLQPHEYFVKMPDDL-ENREMIIVDPMLATGGSAIMAVDALKKRGA--KSIKFVCLVAAPEGVKAFREAHPDVDIYSASLDEYLNEDGYIVPGLGDAGDRLFGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_BACP2 (Uracil phosphoribosyltransferase OS=Bacillus pumilus (strain SAFR-032) GN=upp PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.807e-31
Identity = 70/165 (42.42%), Postives = 108/165 (65.45%), Query Frame = 2
Query:    8 LPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            LP    ++++P+ VA    I  ++ + V+PILRAGL +V+    ++PA K  H+G+ RD +TL+P  Y  KLP    E   I VVDPMLATGG+ V ALN +K+ G +N  I+ +  +AAP  ++++ ++ P + +Y   +D  +N+KG+I+PGLGDAGDR +GT
Sbjct:   48 LPLEEVDVETPVQVAKSNVISGKK-LGVVPILRAGLGMVDGILKLIPAAKVGHVGLYRDPKTLKPVEYYVKLPSDVEEREFI-VVDPMLATGGSAVEALNSLKKRGAKN--IRFMCLIAAPEGVEEMQKHHPDVDIYIAALDEKLNEKGYIIPGLGDAGDRMYGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_CLOTH (Uracil phosphoribosyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=upp PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.281e-30
Identity = 71/165 (43.03%), Postives = 107/165 (64.85%), Query Frame = 2
Query:    8 LPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            +P    EI++P+GVA  + I  ++ + ++PILRAGL +V+    +LP  K  H+G+ RD ETLQP  Y  KLP    E   I V+DPMLATGG+  AA+  +KE GV +  IK++  +A+   ++K+++  P + +Y   +D  +N+ G+I+PGLGDAGDR FGT
Sbjct:   48 MPLKEVEIETPVGVARTKVISGKK-MGIVPILRAGLGMVDGMLKLLPMAKVGHIGLYRDPETLQPVEYYCKLPCDIAE-REIVVLDPMLATGGSASAAIKYLKERGVTS--IKLMCLIASLDGIKKINDEHPDVLIYCAAVDDKLNEHGYIIPGLGDAGDRLFGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_LACSS (Uracil phosphoribosyltransferase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=upp PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.673e-30
Identity = 68/159 (42.77%), Postives = 108/159 (67.92%), Query Frame = 2
Query:   26 EIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            E+++PMG A  + +  ++ +AV+PILRAGL +V+    ++PA K  H+G+ RDE+TLQP  Y  KLP    +  ++F+VDPMLATGG+ + A++ +K+ G  + ++ V+  VAAP  ++ + E  P + +Y   +D  +N++G+I PGLGDAGDR FGT
Sbjct:   54 EVETPMGPAIEKQLSGKK-LAVVPILRAGLGMVDGVLELIPAAKVGHIGMYRDEKTLQPHEYFVKLPTDIDQ-RQLFIVDPMLATGGSAIMAIDALKKRGATSMRLVVL--VAAPEGVKAVQEAHPDVDIYAAGLDDGLNEEGYIYPGLGDAGDRLFGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_LACSK (Uracil phosphoribosyltransferase OS=Lactobacillus sakei GN=upp PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.673e-30
Identity = 68/159 (42.77%), Postives = 108/159 (67.92%), Query Frame = 2
Query:   26 EIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            E+++PMG A  + +  ++ +AV+PILRAGL +V+    ++PA K  H+G+ RDE+TLQP  Y  KLP    +  ++F+VDPMLATGG+ + A++ +K+ G  + ++ V+  VAAP  ++ + E  P + +Y   +D  +N++G+I PGLGDAGDR FGT
Sbjct:   54 EVETPMGPAIEKQLSGKK-LAVVPILRAGLGMVDGVLELIPAAKVGHIGMYRDEKTLQPHEYFVKLPTDIDQ-RQLFIVDPMLATGGSAIMAIDALKKRGATSMRLVVL--VAAPEGVKAVQEAHPDVDIYAAGLDDGLNEEGYIYPGLGDAGDRLFGT 208          
The following BLAST results are available for this feature:
BLAST of CX288840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
UPP_BACAN7.509e-3144.85Uracil phosphoribosyltransferase OS=Bacillus anthr... [more]
UPP_BACAH7.509e-3144.85Uracil phosphoribosyltransferase OS=Bacillus thuri... [more]
UPP_BACAC7.509e-3144.85Uracil phosphoribosyltransferase OS=Bacillus anthr... [more]
UPP_BACAA7.509e-3144.85Uracil phosphoribosyltransferase OS=Bacillus anthr... [more]
UPP_PSEHT9.807e-3145.18Uracil phosphoribosyltransferase OS=Pseudoalteromo... [more]
UPP_LACS19.807e-3141.82Uracil phosphoribosyltransferase OS=Lactobacillus ... [more]
UPP_BACP29.807e-3142.42Uracil phosphoribosyltransferase OS=Bacillus pumil... [more]
UPP_CLOTH1.281e-3043.03Uracil phosphoribosyltransferase OS=Clostridium th... [more]
UPP_LACSS1.673e-3042.77Uracil phosphoribosyltransferase OS=Lactobacillus ... [more]
UPP_LACSK1.673e-3042.77Uracil phosphoribosyltransferase OS=Lactobacillus ... [more]

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Properties
Property NameValue
Genbank descriptionC02006A05SK IF1 Citrus clementina cDNA clone C02006A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288840 ID=CX288840; Name=CX288840; organism=Citrus clementina; type=EST; length=545bp
GGATTGGTTGCCTACTGTCTCAGGGGAAATTCAGTCACCAATGGGTGTTG
CTTCAGTTGAATTTATTGATCCGAGGGAGCCTGTCGCGGTTATTCCAATA
TTGAGAGCAGGTCTTGTTCTTGTGGAGCATGCATCGTCAATCTTGCCCGC
AATAAAAACATATCATCTAGGTATATCCAGAGATGAAGAGACGCTTCAGC
CATCGATATACCTGAATAAATTGCCTGAAAAATTTCCAGAGGGATCACGA
ATATTTGTAGTAGATCCTATGCTGGCAACAGGTGGTACAGTTGTGGCAGC
TCTTAACCTTGTAAAGGAATGTGGGGTGGAGAACAAGCAAATTAAAGTGA
TATCTGCTGTAGCTGCTCCTCCAGCCCTCCAAAAGCTCAGCGAGAATTTC
CCTGGGCTTCATGTGTACACCGGAATTATTGATCCCACTGTCAATGACAA
AGGGTTTATAGTTCCTGGGCTTGGAGATGCAGGTGATCGTAGCTTCGGGA
CATAAAAGTTACACGAGTAATACTAGCAACAGTATGTCACCCTCA
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