CX288840

Overview
NameCX288840
Unique NameCX288840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_CLOBM (Uracil phosphoribosyltransferase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=upp PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.673e-30
Identity = 67/159 (42.14%), Postives = 106/159 (66.67%), Query Frame = 2
Query:   26 EIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            EI++P+     + +  ++ VA++PILRAGL +V   +S++PA K  H+G+ RDEETL+P  Y  KLP+   +   + V DPMLATGG+   A+ L+K+ G   K I+++  VAAP  ++++ +  P + +Y   +D  +N+KG++VPGLGDAGDR +GT
Sbjct:   54 EIETPICKTKCKMLSGKK-VAIVPILRAGLGMVGGMTSLIPAAKVGHIGLYRDEETLKPVEYFCKLPQDIGDRD-VIVTDPMLATGGSAKDAITLLKQKGA--KHIRLMCLVAAPEGIKEVMDEHPDVDIYVASVDEKLNEKGYVVPGLGDAGDRLYGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_CLOBL (Uracil phosphoribosyltransferase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=upp PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.673e-30
Identity = 67/159 (42.14%), Postives = 106/159 (66.67%), Query Frame = 2
Query:   26 EIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            EI++P+     + +  ++ VA++PILRAGL +V   +S++PA K  H+G+ RDEETL+P  Y  KLP+   +   + V DPMLATGG+   A+ L+K+ G   K I+++  VAAP  ++++ +  P + +Y   +D  +N+KG++VPGLGDAGDR +GT
Sbjct:   54 EIETPICKTKCKMLSGKK-VAIVPILRAGLGMVGGMTSLIPAAKVGHIGLYRDEETLKPVEYFCKLPQDIGDRD-VIVTDPMLATGGSAKDAITLLKQKGA--KHIRLMCLVAAPEGIKEVMDEHPDVDIYVASVDEKLNEKGYVVPGLGDAGDRLYGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_CLOBK (Uracil phosphoribosyltransferase OS=Clostridium botulinum (strain Okra / Type B1) GN=upp PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.673e-30
Identity = 67/159 (42.14%), Postives = 106/159 (66.67%), Query Frame = 2
Query:   26 EIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            EI++P+     + +  ++ VA++PILRAGL +V   +S++PA K  H+G+ RDEETL+P  Y  KLP+   +   + V DPMLATGG+   A+ L+K+ G   K I+++  VAAP  ++++ +  P + +Y   +D  +N+KG++VPGLGDAGDR +GT
Sbjct:   54 EIETPICKTKCKMLSGKK-VAIVPILRAGLGMVGGMTSLIPAAKVGHIGLYRDEETLKPVEYFCKLPQDIGDRD-VIVTDPMLATGGSAKDAITLLKQKGA--KHIRLMCLVAAPEGIKEVMDEHPDVDIYVASVDEKLNEKGYVVPGLGDAGDRLYGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_CLOBJ (Uracil phosphoribosyltransferase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=upp PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.673e-30
Identity = 67/159 (42.14%), Postives = 106/159 (66.67%), Query Frame = 2
Query:   26 EIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            EI++P+     + +  ++ VA++PILRAGL +V   +S++PA K  H+G+ RDEETL+P  Y  KLP+   +   + V DPMLATGG+   A+ L+K+ G   K I+++  VAAP  ++++ +  P + +Y   +D  +N+KG++VPGLGDAGDR +GT
Sbjct:   54 EIETPICKTKCKMLSGKK-VAIVPILRAGLGMVGGMTSLIPAAKVGHIGLYRDEETLKPVEYFCKLPQDIGDRD-VIVTDPMLATGGSAKDAITLLKQKGA--KHIRLMCLVAAPEGIKEVMDEHPDVDIYVASVDEKLNEKGYVVPGLGDAGDRLYGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_CLOBH (Uracil phosphoribosyltransferase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=upp PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.673e-30
Identity = 67/159 (42.14%), Postives = 106/159 (66.67%), Query Frame = 2
Query:   26 EIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            EI++P+     + +  ++ VA++PILRAGL +V   +S++PA K  H+G+ RDEETL+P  Y  KLP+   +   + V DPMLATGG+   A+ L+K+ G   K I+++  VAAP  ++++ +  P + +Y   +D  +N+KG++VPGLGDAGDR +GT
Sbjct:   54 EIETPICKTKCKMLSGKK-VAIVPILRAGLGMVGGMTSLIPAAKVGHIGLYRDEETLKPVEYFCKLPQDIGDRD-VIVTDPMLATGGSAKDAITLLKQKGA--KHIRLMCLVAAPEGIKEVMDEHPDVDIYVASVDEKLNEKGYVVPGLGDAGDRLYGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_CLOB6 (Uracil phosphoribosyltransferase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=upp PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.673e-30
Identity = 67/159 (42.14%), Postives = 106/159 (66.67%), Query Frame = 2
Query:   26 EIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            EI++P+     + +  ++ VA++PILRAGL +V   +S++PA K  H+G+ RDEETL+P  Y  KLP+   +   + V DPMLATGG+   A+ L+K+ G   K I+++  VAAP  ++++ +  P + +Y   +D  +N+KG++VPGLGDAGDR +GT
Sbjct:   54 EIETPICKTKCKMLSGKK-VAIVPILRAGLGMVGGMTSLIPAAKVGHIGLYRDEETLKPVEYFCKLPQDIGDRD-VIVTDPMLATGGSAKDAITLLKQKGA--KHIRLMCLVAAPEGIKEVMDEHPDVDIYVASVDEKLNEKGYVVPGLGDAGDRLYGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_CLOB1 (Uracil phosphoribosyltransferase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=upp PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.673e-30
Identity = 67/159 (42.14%), Postives = 106/159 (66.67%), Query Frame = 2
Query:   26 EIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            EI++P+     + +  ++ VA++PILRAGL +V   +S++PA K  H+G+ RDEETL+P  Y  KLP+   +   + V DPMLATGG+   A+ L+K+ G   K I+++  VAAP  ++++ +  P + +Y   +D  +N+KG++VPGLGDAGDR +GT
Sbjct:   54 EIETPICKTKCKMLSGKK-VAIVPILRAGLGMVGGMTSLIPAAKVGHIGLYRDEETLKPVEYFCKLPQDIGDRD-VIVTDPMLATGGSAKDAITLLKQKGA--KHIRLMCLVAAPEGIKEVMDEHPDVDIYVASVDEKLNEKGYVVPGLGDAGDRLYGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_BACLD (Uracil phosphoribosyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=upp PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.673e-30
Identity = 72/165 (43.64%), Postives = 106/165 (64.24%), Query Frame = 2
Query:    8 LPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            LP     +++P+ +A    I  ++ + V+PILRAGL +V+    ++PA K  H+G+ RD ETL+P  Y  KLP    E   I VVDPMLATGG+ V ALN +K+ G +N  I+ +  +AAP  + ++ ++ P + +Y   +D  +N+KG+IVPGLGDAGDR FGT
Sbjct:   48 LPLEEVNVETPVQMAKSNVIAGKK-LGVVPILRAGLGMVDGILKLIPAAKVGHVGLYRDPETLKPVEYYVKLPSDVEEREFI-VVDPMLATGGSAVEALNSLKKRGAKN--IRFMCLIAAPEGVDEVQKHHPDVDIYIAALDEKLNEKGYIVPGLGDAGDRMFGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_LYSSC (Uracil phosphoribosyltransferase OS=Lysinibacillus sphaericus (strain C3-41) GN=upp PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.185e-30
Identity = 69/165 (41.82%), Postives = 106/165 (64.24%), Query Frame = 2
Query:    8 LPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            +P    EI++P+ +A  + +  ++ +A++PILRAG+ +V+    ++PA K  H+G+ RD ETL+P  Y  KLP    E   I +VDPMLATGG+ V A++ +K+ G +N  IK +  +AAP  ++ + E    + +Y   +D  +ND G+IVPGLGDAGDR FGT
Sbjct:   48 MPVEEIEIETPVTIAKTKVLSGKK-LAIVPILRAGIGMVDGVLKLIPAAKVGHIGLYRDPETLKPVEYYAKLPADVEERDFI-IVDPMLATGGSAVEAIHSLKKRGAKN--IKFMCLIAAPEGVKAIQEEHSDVDIYIAALDEKLNDHGYIVPGLGDAGDRLFGT 208          
BLAST of CX288840 vs. ExPASy Swiss-Prot
Match: UPP_GEOSW (Uracil phosphoribosyltransferase OS=Geobacillus sp. (strain WCH70) GN=upp PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.185e-30
Identity = 74/165 (44.85%), Postives = 104/165 (63.03%), Query Frame = 2
Query:    8 LPTVSGEIQSPMGVASVEFIDPREPVAVIPILRAGLVLVEHASSILPAIKTYHLGISRDEETLQPSIYLNKLPEKFPEGSRIFVVDPMLATGGTVVAALNLVKECGVENKQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPTVNDKGFIVPGLGDAGDRSFGT 502
            LP    EI++P+  A  + I  ++ + VIPILRAG+ +V+    ++PA K  H+G+ RD ETL+P  Y  KLP    E   I VVDPMLATGG+ V A+N +K+ G   K IK +  +AAP  ++ + +  P + +Y   +D  +ND G+IVPGLGDAGDR FGT
Sbjct:   48 LPLEEVEIETPVSKAKSKVIAGKK-LGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPETLKPVEYYVKLPTDVEERDFI-VVDPMLATGGSAVEAINALKKRGA--KSIKFMCLIAAPEGVEAVKKAHPDVDIYIAALDEKLNDHGYIVPGLGDAGDRLFGT 208          
The following BLAST results are available for this feature:
BLAST of CX288840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
UPP_CLOBM1.673e-3042.14Uracil phosphoribosyltransferase OS=Clostridium bo... [more]
UPP_CLOBL1.673e-3042.14Uracil phosphoribosyltransferase OS=Clostridium bo... [more]
UPP_CLOBK1.673e-3042.14Uracil phosphoribosyltransferase OS=Clostridium bo... [more]
UPP_CLOBJ1.673e-3042.14Uracil phosphoribosyltransferase OS=Clostridium bo... [more]
UPP_CLOBH1.673e-3042.14Uracil phosphoribosyltransferase OS=Clostridium bo... [more]
UPP_CLOB61.673e-3042.14Uracil phosphoribosyltransferase OS=Clostridium bo... [more]
UPP_CLOB11.673e-3042.14Uracil phosphoribosyltransferase OS=Clostridium bo... [more]
UPP_BACLD1.673e-3043.64Uracil phosphoribosyltransferase OS=Bacillus liche... [more]
UPP_LYSSC2.185e-3041.82Uracil phosphoribosyltransferase OS=Lysinibacillus... [more]
UPP_GEOSW2.185e-3044.85Uracil phosphoribosyltransferase OS=Geobacillus sp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02006A05SK IF1 Citrus clementina cDNA clone C02006A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288840 ID=CX288840; Name=CX288840; organism=Citrus clementina; type=EST; length=545bp
GGATTGGTTGCCTACTGTCTCAGGGGAAATTCAGTCACCAATGGGTGTTG
CTTCAGTTGAATTTATTGATCCGAGGGAGCCTGTCGCGGTTATTCCAATA
TTGAGAGCAGGTCTTGTTCTTGTGGAGCATGCATCGTCAATCTTGCCCGC
AATAAAAACATATCATCTAGGTATATCCAGAGATGAAGAGACGCTTCAGC
CATCGATATACCTGAATAAATTGCCTGAAAAATTTCCAGAGGGATCACGA
ATATTTGTAGTAGATCCTATGCTGGCAACAGGTGGTACAGTTGTGGCAGC
TCTTAACCTTGTAAAGGAATGTGGGGTGGAGAACAAGCAAATTAAAGTGA
TATCTGCTGTAGCTGCTCCTCCAGCCCTCCAAAAGCTCAGCGAGAATTTC
CCTGGGCTTCATGTGTACACCGGAATTATTGATCCCACTGTCAATGACAA
AGGGTTTATAGTTCCTGGGCTTGGAGATGCAGGTGATCGTAGCTTCGGGA
CATAAAAGTTACACGAGTAATACTAGCAACAGTATGTCACCCTCA
back to top