CX288844

Overview
NameCX288844
Unique NameCX288844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_STAEQ (Argininosuccinate lyase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=argH PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.538e-21
Identity = 53/137 (38.69%), Postives = 79/137 (57.66%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLGINRS 412
            KE  FD+V T+ G L +      ++  N  R+ + +   + +AT LADYLV+K +PFRT+H+IVGK V  C+ K   L D+ L E +  +   ++D+Y+YL  EN +++  S+GSTG   V  QL    A L  N S
Sbjct:  326 KEGLFDAVHTLKGSLRIFEGMVASMKVNSNRLSQTVKNDFSNATELADYLVSKSVPFRTAHEIVGKIVLNCIHKGIYLLDVPLSEYQEHHENIEEDIYDYLTPENCLKRRQSYGSTGQESVKHQLKVAKALLKDNES 462          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_DESAD (Argininosuccinate lyase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=argH PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.538e-21
Identity = 55/134 (41.04%), Postives = 81/134 (60.45%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQ---LHSWVAK 394
            KEP FD  KT+   + + A+    + FN   ++ AL  G+L+AT LADYLV K IPFR +H I G AVA   ++   L+D+SL+E+++ +   ++DV+E L  E A+R+  S GSTG   V  Q   L +W+ K
Sbjct:  327 KEPFFDCDKTVHASVVIMADMMDAMGFNPANMESALKKGFLNATELADYLVGKGIPFREAHHITGSAVAKAEAESRGLEDMSLEELKTFSDKIEEDVFEVLSYEAAVRRRVSPGSTGPESVDSQIAELKAWLKK 460          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_PROM4 (Argininosuccinate lyase OS=Prochlorococcus marinus (strain MIT 9211) GN=argH PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.621e-21
Identity = 49/129 (37.98%), Postives = 84/129 (65.12%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLE-VSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSW 385
            KE  FD+V T+   L+ +S    + + F+++R+  A+ + + +AT +ADYLV+K++PFR ++ IVG+ V LC+ +   L+DLS D+ + ++P FD+D+Y+ L  E+ +    S G TG A V+ QL +W
Sbjct:  325 KEALFDTVVTVRNSLQAMSILLEEGLEFSLDRLGSAVESDFSNATDVADYLVSKEVPFREAYQIVGRLVKLCMKEGILLKDLSFDQWQDMHPAFDQDIYKRLTPEHVVASRISQGGTGFAQVSAQLENW 453          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_CARHZ (Argininosuccinate lyase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=argH PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.621e-21
Identity = 52/125 (41.60%), Postives = 74/125 (59.20%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 376
            KEP FD+V T+ G L V     + I FN   + KA   G+L+AT LA+YLV K +PFR +H I G+ V        +L +LSLDE++ ++P+ ++D+YE L +EN + K   FG      V EQL
Sbjct:  324 KEPLFDTVDTLKGSLRVFTGMLKTIKFNQGAMYKAALKGFLNATDLAEYLVEKGVPFREAHRITGELVLKAEKTGRELLELSLDELKEMSPLIEEDIYEKLKIENVLAKRKLFGGPAPQAVIEQL 448          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_BACC2 (Argininosuccinate lyase OS=Bacillus cereus (strain G9842) GN=argH PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.035e-21
Identity = 47/117 (40.17%), Postives = 75/117 (64.10%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTG 352
            KE  FD+VKT+ G L + A   + +T N E++ +A+   + +AT +ADYL NK +PFR +H+IVGK V  C  K   L D+ L+  + ++P+F++D+YE L    A+++ +S G TG
Sbjct:  325 KEGMFDTVKTVEGCLHIMAGMLETMTVNKEKMGQAVTQDFSNATEIADYLANKGLPFRQAHEIVGKLVLHCTQKGIYLLDVPLETYKEMSPLFEEDLYEVLSPYEAVKRRNSAGGTG 441          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_STACT (Argininosuccinate lyase OS=Staphylococcus carnosus (strain TM300) GN=argH PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.882e-21
Identity = 46/125 (36.80%), Postives = 73/125 (58.40%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 376
            KE  FD+V T+ G L +      ++T N +R+ + +   + +AT LADYLV K +PFR +H IVG+ V  C+  +C L D+ L++ +  +   D  +Y YL  EN +++  S+GSTG   V  Q+
Sbjct:  326 KEGLFDAVHTVTGSLRIFEGMLASLTVNTDRLNETVHQDFSNATELADYLVEKDVPFREAHAIVGQIVYWCIQHDCYLLDVPLEKYQEFSSSIDDTIYSYLKPENCLKRRKSYGSTGQESVRHQI 450          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_DESVV (Argininosuccinate lyase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=argH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.029e-20
Identity = 54/134 (40.30%), Postives = 78/134 (58.21%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQ---LHSWVAK 394
            KEP  D+ +T+   LE+ A   + + FN  R++ AL +G+L+AT LADYLV K IPFR +H + G AVAL   K   L++L L++ R +    D+DVY  L  E A+ +  + G TG   V  Q   L SW+ +
Sbjct:  327 KEPFIDADRTVSASLEIMAGMLREVRFNTARMRTALRSGFLNATELADYLVGKGIPFREAHHLTGAAVALAEEKGVTLEELPLEDYRGICDRIDEDVYPILEPEAAVSRRETPGGTGPRSVAAQIAELDSWLGR 460          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_DESVH (Argininosuccinate lyase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=argH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.029e-20
Identity = 54/134 (40.30%), Postives = 78/134 (58.21%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQ---LHSWVAK 394
            KEP  D+ +T+   LE+ A   + + FN  R++ AL +G+L+AT LADYLV K IPFR +H + G AVAL   K   L++L L++ R +    D+DVY  L  E A+ +  + G TG   V  Q   L SW+ +
Sbjct:  327 KEPFIDADRTVSASLEIMAGMLREVRFNTARMRTALRSGFLNATELADYLVGKGIPFREAHHLTGAAVALAEEKGVTLEELPLEDYRGICDRIDEDVYPILEPEAAVSRRETPGGTGPRSVAAQIAELDSWLGR 460          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_CLOPH (Argininosuccinate lyase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=argH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.029e-20
Identity = 46/137 (33.58%), Postives = 79/137 (57.66%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLGINRS 412
            KE TFD++ T+ G L +     + + FN + +K +   G+ +AT  ADYLVN  + FR +H I+G  V  C+ K C ++DLSL E+++++PVF +D+Y+ + ++  + K ++ G  G   + E +      L  N S
Sbjct:  324 KELTFDAIDTVKGCLSLFTGMIRTMKFNRDTMKASAVLGFTNATDAADYLVNHGVAFRDAHGIIGHLVLTCIEKNCSIEDLSLTELQAISPVFKEDIYDAISLKTCVEKRNTIGGPGVDAMNEVIKECAKYLENNPS 460          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_BACCN (Argininosuccinate lyase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=argH PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.344e-20
Identity = 48/125 (38.40%), Postives = 77/125 (61.60%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 376
            KE  FD+VKT+ G L + A   + +T N E + +A+   + +AT +ADYL NK +PFR +H+IVGK V  C  K   L D+ L+  + ++P+F++D+YE L    A+++ +S G TG   + + L
Sbjct:  325 KEGMFDTVKTVEGCLHIMAGMLETMTVNKENMGQAVTQDFSNATEVADYLANKGLPFRQAHEIVGKLVLHCTKKGIYLLDVPLETYKEMSPLFEEDLYEVLSPYAAVKRRNSAGGTGFVQIEQAL 449          
The following BLAST results are available for this feature:
BLAST of CX288844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARLY_STAEQ3.538e-2138.69Argininosuccinate lyase OS=Staphylococcus epidermi... [more]
ARLY_DESAD3.538e-2141.04Argininosuccinate lyase OS=Desulfovibrio salexigen... [more]
ARLY_PROM44.621e-2137.98Argininosuccinate lyase OS=Prochlorococcus marinus... [more]
ARLY_CARHZ4.621e-2141.60Argininosuccinate lyase OS=Carboxydothermus hydrog... [more]
ARLY_BACC26.035e-2140.17Argininosuccinate lyase OS=Bacillus cereus (strain... [more]
ARLY_STACT7.882e-2136.80Argininosuccinate lyase OS=Staphylococcus carnosus... [more]
ARLY_DESVV1.029e-2040.30Argininosuccinate lyase OS=Desulfovibrio vulgaris ... [more]
ARLY_DESVH1.029e-2040.30Argininosuccinate lyase OS=Desulfovibrio vulgaris ... [more]
ARLY_CLOPH1.029e-2033.58Argininosuccinate lyase OS=Clostridium phytofermen... [more]
ARLY_BACCN1.344e-2038.40Argininosuccinate lyase OS=Bacillus cereus subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionC02006A09SK IF1 Citrus clementina cDNA clone C02006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288844 ID=CX288844; Name=CX288844; organism=Citrus clementina; type=EST; length=460bp
TAAAGAACCTACATTTGACAGCGTTAAGACAATTGTTGGAATGCTTGAAG
TTTCAGCAGAGTTTGCACAGAACATTACATTTAATGTGGAGAGAATAAAG
AAGGCTTTGCCAGCTGGTTATCTTGATGCCACAACCCTTGCCGATTATCT
TGTGAATAAGCAAATACCTTTTAGGACTTCCCATGATATAGTAGGAAAAG
CAGTTGCTTTGTGCGTGTCAAAGGAATGTCAGCTTCAGGATCTGAGTCTT
GATGAGATGAGAAGTCTAAACCCAGTGTTTGATAAGGATGTATACGAATA
TCTCGGAGTAGAAAATGCAATAAGGAAATTCAGCTCATTTGGTTCCACAG
GATCGGCATGCGTCACTGAACAACTACATTCTTGGGTTGCCAAGCTTGGA
ATCAACAGAAGTAGCTGTTAATTTACAAATGGAAGCAGAGATGAGTAAAA
TGAGATCAAG
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