CX288844

Overview
NameCX288844
Unique NameCX288844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_BACC4 (Argininosuccinate lyase OS=Bacillus cereus (strain B4264) GN=argH PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.344e-20
Identity = 47/117 (40.17%), Postives = 75/117 (64.10%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTG 352
            KE  FD+VKT+ G L + A   + +T N E++ +A+   + +AT +ADYL NK +PFR +H+IVGK V  C  K   L D+SL+  + ++ +F++D+YE L    A+++ +S G TG
Sbjct:  325 KEGMFDTVKTVEGCLHIMAGMLETMTVNKEKMGQAVTQDFSNATEIADYLANKGLPFRQAHEIVGKLVLYCTQKGIYLLDVSLETYKEMSSLFEEDLYEVLSPYAAVKRRNSAGGTG 441          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_THETN (Argininosuccinate lyase OS=Thermoanaerobacter tengcongensis GN=argH PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.756e-20
Identity = 45/115 (39.13%), Postives = 72/115 (62.61%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGS 346
            KE  FD + T+   L+V  E  + I    + ++KA   GY++AT  ADYLV K IPFRT+H+I GK V   + +   +++LSL+E++  + V +KDVYE + ++N ++K  + GS
Sbjct:  321 KEALFDGIDTLKMSLKVFTEMIKTIKVKTDNMEKAAKYGYMNATDFADYLVQKGIPFRTAHEIAGKVVLYAIERNLPIEELSLEELKKFSDVIEKDVYEAIDIKNILKKRKTIGS 435          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_PROM9 (Argininosuccinate lyase OS=Prochlorococcus marinus (strain MIT 9312) GN=argH PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.756e-20
Identity = 47/133 (35.34%), Postives = 84/133 (63.16%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLE-VSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 397
            KEP FD+ +TI   ++ ++    + I FN++ + +++   + +AT LADYLV KQ+PFRT++ +VG+ V  C+ +E   +DL + E++  +P FD+DV+  L   N ++  +S G TG   V +++++W  KL
Sbjct:  325 KEPIFDTAETISSSIKAMTILITEGIEFNIKNLSESVQNDFSNATDLADYLVCKQVPFRTAYHVVGEIVKYCLEREILFKDLKISEIKKFHPEFDEDVFVDLEPFNVVKSRTSEGGTGFTQVEKEVNNWQKKL 457          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_GEOUR (Argininosuccinate lyase OS=Geobacter uraniireducens (strain Rf4) GN=argH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.293e-20
Identity = 47/133 (35.34%), Postives = 84/133 (63.16%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLG 400
            KEP FD++ T+ G L++ A+  + +  NV  +++A   G+  AT +ADYLV K +PFR +H++VGK+VA C++++  L +LS++E RS +   D+D+Y+ + +E ++    + G T    V  ++    AK+G
Sbjct:  327 KEPLFDTIDTVKGSLKIFADMIREMRVNVATMRQAAAKGFSTATDVADYLVRKGMPFRDAHEVVGKSVAYCIAEKKDLPELSIEEWRSFSDKIDEDIYDAITLEASVNARRATGGTALERVKAEIER--AKVG 457          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_EUBE2 (Argininosuccinate lyase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=argH PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.995e-20
Identity = 45/117 (38.46%), Postives = 73/117 (62.39%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTG 352
            KE +FD+  T  G + +       + FN +R++ +   G+ +AT  ADYLV K +PFR +H IVG+ V +C+ K   L DLSLDE ++++PVFD+D+YE + ++  + K  + G+ G
Sbjct:  324 KELSFDAFDTAKGCISLFKGMIDTMKFNNKRMEASAKNGFTNATDAADYLVKKGVPFREAHGIVGQLVLMCIEKNIALDDLSLDEYKAVSPVFDEDIYEAISLQTCVDKRLTLGAPG 440          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_PROMP (Argininosuccinate lyase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=argH PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.912e-20
Identity = 51/133 (38.35%), Postives = 81/133 (60.90%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLE-VSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 397
            KEP FD+V TI   L+ ++    + I FNVE++  ++   + +AT LADYLV K++PFR ++ +VG  V  C+SK    +DL L+E ++ +  F +D+YE L   N ++  +S G TG   V  +L++W  KL
Sbjct:  325 KEPIFDTVDTISSCLKAMTILLNEGIEFNVEKLMDSVHNDFSNATDLADYLVFKKVPFREAYQVVGDIVKYCLSKNILFKDLQLEEFQTFHNEFKEDIYENLNPMNVVKSRNSLGGTGFDQVKLELNNWKKKL 457          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_PROM0 (Argininosuccinate lyase OS=Prochlorococcus marinus (strain MIT 9301) GN=argH PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.912e-20
Identity = 47/135 (34.81%), Postives = 83/135 (61.48%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLE-VSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLGI 403
            KEP FD+ +TI   +  ++    + I FN++ +  ++   + +AT LADYLV+K +PFRT++ +VG+ V  C+ ++   ++L +DE +  +P FD+DV+  L   N ++  +S G TG A V +++ +W  KL I
Sbjct:  325 KEPIFDTAETISSCITAMTILLNEGIEFNIQNLSDSVENDFSNATDLADYLVSKDVPFRTAYQVVGEIVKYCLKRKMLFKNLKIDEFKKFHPEFDEDVFVDLKPFNVVKSRNSEGGTGFAQVEKEVKNWQKKLSI 459          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_NITOC (Argininosuccinate lyase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=argH PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.912e-20
Identity = 51/132 (38.64%), Postives = 77/132 (58.33%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 397
            KEP FD+V T++G L   A+    IT N +++++A   GY  AT LADYLV K + FR +H+IVGKAVAL + +   L  L L  ++  +PV ++DV++ L +E ++   +  G T  A V   +     KL
Sbjct:  332 KEPLFDTVDTLLGCLRAFADMIPAITTNPDKMREAATKGYATATDLADYLVRKGVSFRDAHEIVGKAVALAIEQSKDLAALKLATLQDFSPVIEEDVFDVLTLEGSVAARNHLGGTAPAQVRAAIQRGREKL 463          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_GEOTN (Argininosuccinate lyase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=argH PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.912e-20
Identity = 49/133 (36.84%), Postives = 78/133 (58.65%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLG 400
            KE  FD+VKT++G L++     + +   V+ ++KA    + +AT LADYL  K +PFR +H++VGK V  C+ +   L DL L+  +  +P+F+KD+Y+ L    A+ + +S G TG A V   L     +LG
Sbjct:  325 KEGMFDTVKTVIGSLKIFTGMIETMNVRVDAMEKATKQDFSNATELADYLAAKGMPFREAHEVVGKLVLHCIEQGVFLADLPLEVYKEASPLFEKDIYDALNPRTAVNRRNSAGGTGFAEVRATLAKVKERLG 457          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_GEOSF (Argininosuccinate lyase OS=Geobacter sp. (strain FRC-32) GN=argH PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.912e-20
Identity = 42/125 (33.60%), Postives = 78/125 (62.40%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 376
            KEP FD++ T+ G L++ A+  + +  N + ++ A   G+  AT +ADYLV K +PFR +H++VGK+VA C++ +  L +L+++E +  +P+ D D+YE + +E ++    + G T    V  ++
Sbjct:  327 KEPLFDTIDTVKGSLKIFADMIREMQVNTDTMRNAAAKGFSTATDVADYLVRKGMPFRDAHEVVGKSVAYCIANKKDLPELAIEEWKGFSPMIDTDIYEAITLEASVNARRATGGTSLEGVKREI 451          
The following BLAST results are available for this feature:
BLAST of CX288844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARLY_BACC41.344e-2040.17Argininosuccinate lyase OS=Bacillus cereus (strain... [more]
ARLY_THETN1.756e-2039.13Argininosuccinate lyase OS=Thermoanaerobacter teng... [more]
ARLY_PROM91.756e-2035.34Argininosuccinate lyase OS=Prochlorococcus marinus... [more]
ARLY_GEOUR2.293e-2035.34Argininosuccinate lyase OS=Geobacter uraniireducen... [more]
ARLY_EUBE22.995e-2038.46Argininosuccinate lyase OS=Eubacterium eligens (st... [more]
ARLY_PROMP3.912e-2038.35Argininosuccinate lyase OS=Prochlorococcus marinus... [more]
ARLY_PROM03.912e-2034.81Argininosuccinate lyase OS=Prochlorococcus marinus... [more]
ARLY_NITOC3.912e-2038.64Argininosuccinate lyase OS=Nitrosococcus oceani (s... [more]
ARLY_GEOTN3.912e-2036.84Argininosuccinate lyase OS=Geobacillus thermodenit... [more]
ARLY_GEOSF3.912e-2033.60Argininosuccinate lyase OS=Geobacter sp. (strain F... [more]

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Properties
Property NameValue
Genbank descriptionC02006A09SK IF1 Citrus clementina cDNA clone C02006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288844 ID=CX288844; Name=CX288844; organism=Citrus clementina; type=EST; length=460bp
TAAAGAACCTACATTTGACAGCGTTAAGACAATTGTTGGAATGCTTGAAG
TTTCAGCAGAGTTTGCACAGAACATTACATTTAATGTGGAGAGAATAAAG
AAGGCTTTGCCAGCTGGTTATCTTGATGCCACAACCCTTGCCGATTATCT
TGTGAATAAGCAAATACCTTTTAGGACTTCCCATGATATAGTAGGAAAAG
CAGTTGCTTTGTGCGTGTCAAAGGAATGTCAGCTTCAGGATCTGAGTCTT
GATGAGATGAGAAGTCTAAACCCAGTGTTTGATAAGGATGTATACGAATA
TCTCGGAGTAGAAAATGCAATAAGGAAATTCAGCTCATTTGGTTCCACAG
GATCGGCATGCGTCACTGAACAACTACATTCTTGGGTTGCCAAGCTTGGA
ATCAACAGAAGTAGCTGTTAATTTACAAATGGAAGCAGAGATGAGTAAAA
TGAGATCAAG
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