CX288844

Overview
NameCX288844
Unique NameCX288844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_STRCL (Argininosuccinate lyase OS=Streptomyces clavuligerus GN=argH PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.348e-12
Identity = 41/141 (29.08%), Postives = 68/141 (48.23%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL----------HSWVAK 394
            KEP FDS   +  +L         +T + ER+++  PAG+  AT +A++LV + +PFR +HD+ G  V  C S   +L  L+ ++  +++     +V   L V  A+      G T  + V  QL          H+W A+
Sbjct:  331 KEPVFDSCDQLEVLLPAFTGMVATLTVHRERMEELAPAGFSLATDIAEWLVRQGVPFRVAHDVAGACVKECESAGIELHQLTDEQFAAISEHLTPEVRSVLTVRGALASRDGRGGTAPSAVAVQLAEVKADLAVQHAWAAR 471          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_SALSV (Argininosuccinate lyase OS=Salmonella schwarzengrund (strain CVM19633) GN=argH PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.348e-12
Identity = 43/134 (32.09%), Postives = 70/134 (52.24%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLGI 403
            KE  FD++ T +  L ++A     I     R + A   GY +AT LADYLV K +PFR +H IVG+AV   + +   L+ L L +++  + V   DVY  L +++ + K ++ G      V + +    A+L +
Sbjct:  325 KEGLFDALDTWLDCLHMAALVLDGIQVKRLRCQDAAQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEALPLADLQKFSRVIGDDVYPILSLQSCLDKRAAKGGVSPQQVAQAIDDARARLAL 458          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_PSEU2 (Argininosuccinate lyase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=argH PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.348e-12
Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGST 349
            KEP FD+  T+   L   A+    I      +++A   G+  AT LADYLV + +PFR  H+IVG AV   V     L ++SL+E+R  +   ++DV+  L +E ++   +  G T
Sbjct:  330 KEPLFDAADTLRDSLRAFADMIPAIKPRHAMMREAALRGFSTATDLADYLVRRGLPFRDCHEIVGHAVKYGVETGKDLAEMSLEELRQFSNQIEQDVFAVLTLEGSVNARNHIGGT 445          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_PSESM (Argininosuccinate lyase OS=Pseudomonas syringae pv. tomato GN=argH PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.348e-12
Identity = 44/131 (33.59%), Postives = 69/131 (52.67%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAK 394
            KEP FD+  T+   L   A+    I      +++A   G+  AT LADYLV + +PFR  H+IVG AV   V     L ++SL+E+R  +   ++DV+  L +E ++   +  G T      EQ+ + VA+
Sbjct:  330 KEPLFDAADTLRDSLRAFADMIPAIKPRHAIMREAALRGFSTATDLADYLVRRGLPFRDCHEIVGHAVKYGVETGKDLAEMSLEELRQFSNQIEQDVFAVLTLEGSVNARNHVGGT----APEQVRAAVAR 456          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_BRAJA (Argininosuccinate lyase OS=Bradyrhizobium japonicum GN=argH PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.348e-12
Identity = 39/103 (37.86%), Postives = 57/103 (55.34%), Query Frame = 2
Query:   92 RIKKALPAGYLDATTLADYLVNK-QIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 397
            ++K A   GY  AT LAD+LV   ++PFR +H + G+ VA        L +L L EM+++ P   KDV   L VE++++  +SFG T    V  Q  SW  +L
Sbjct:  356 KMKAAAGEGYATATDLADWLVRTLKMPFREAHHVTGRIVAKAAEGGVALHELPLKEMQAIEPRITKDVLGVLSVESSVKSRTSFGGTAPKNVASQAKSWAKRL 458          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY1_PSEPF (Argininosuccinate lyase 1 OS=Pseudomonas fluorescens (strain Pf0-1) GN=argH1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.348e-12
Identity = 40/125 (32.00%), Postives = 65/125 (52.00%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 376
            K    DSV T++ +L   A     +T NVE +++  P G+  AT +AD+L  + +PF+ +H+I G  V  C   + +L + S   +  ++P    DV + L +E AI   S +G T    V EQ+
Sbjct:  329 KNGVLDSVDTLLLVLPAMAGMVATMTVNVEELRRQAPLGFTLATEVADWLAVRGVPFKEAHEITGALVQACEKHDLELWEASPALLAEIDPRLTADVRDSLTLEAAIAARSGWGGTAPQQVREQI 453          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_NOVAD (Argininosuccinate lyase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=argH PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.760e-12
Identity = 42/139 (30.22%), Postives = 69/139 (49.64%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNK-QIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKLGINRSS 415
            K P F++   +   +           F  +R++ A   GY  AT LAD+LV +  IPFR +H I G AV L  S+   L  LS++++++++   D+ VY  L VE ++    S G T    V +++      LG+  S+
Sbjct:  331 KPPVFEAASLLALSIAAMTGMVAEAKFRTDRMRAAAELGYATATDLADWLVRQANIPFREAHHITGSAVKLAESRGIALDQLSIEDLKAIDERIDERVYAALSVEASVAARCSHGGTAPDEVRKRVAQARVALGLEESA 469          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_SACDO (Argininosuccinate lyase OS=Saccharomyces douglasii GN=ARG4 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.299e-12
Identity = 40/133 (30.08%), Postives = 75/133 (56.39%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQ-LQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 397
            KEP FD + T+   + ++      +T N ++++ AL    L AT LADYLV K +PFR +H I G+ VA   +     +  L+L++ + ++  F +D++E    E ++ + ++ G T  + V +QL++  ++L
Sbjct:  331 KEPLFDCLTTVEHSMLIATGVISTLTVNKDKMEAALTMDML-ATDLADYLVRKGVPFRETHHISGECVATAENLGLSGIDKLTLEQYQKIDSRFAEDLFETFNFEQSVERRNATGGTAKSAVLKQLNNLKSQL 462          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_PSE14 (Argininosuccinate lyase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=argH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.299e-12
Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGST 349
            KEP FD+  T+   L   A+    I      +++A   G+  AT LADYLV + +PFR  H+IVG AV   V     L ++SL+E+R  +   ++DV+  L +E ++   +  G T
Sbjct:  330 KEPLFDAADTLRDSLRAFADMIPAIKPRHAIMREAALRGFSTATDLADYLVRRGLPFRDCHEIVGHAVKYGVETGKDLAEMSLEELRQFSNQIEQDVFAVLTLEGSVNARNHIGGT 445          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_KINRD (Argininosuccinate lyase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=argH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.299e-12
Identity = 39/133 (29.32%), Postives = 67/133 (50.38%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKE------CQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHS 382
            KEP FD+V T+  +L   A     + F+ +R+    P G+  AT +A++LV + +PFR +H I G  V  C  +        +L DL+++++ +++P     V + L  E ++      G T    V EQL +
Sbjct:  335 KEPVFDAVDTLEVLLPAVAGMVATLHFHTDRMASLAPQGFALATDIAEWLVRRGVPFRDAHRISGACVRRCEERAIAEGRGVELWDLTVEDLAAISPHLAPAVRDVLSTEGSLSSRDGIGGTAPVRVAEQLEA 467          
The following BLAST results are available for this feature:
BLAST of CX288844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARLY_STRCL1.348e-1229.08Argininosuccinate lyase OS=Streptomyces clavuliger... [more]
ARLY_SALSV1.348e-1232.09Argininosuccinate lyase OS=Salmonella schwarzengru... [more]
ARLY_PSEU21.348e-1234.48Argininosuccinate lyase OS=Pseudomonas syringae pv... [more]
ARLY_PSESM1.348e-1233.59Argininosuccinate lyase OS=Pseudomonas syringae pv... [more]
ARLY_BRAJA1.348e-1237.86Argininosuccinate lyase OS=Bradyrhizobium japonicu... [more]
ARLY1_PSEPF1.348e-1232.00Argininosuccinate lyase 1 OS=Pseudomonas fluoresce... [more]
ARLY_NOVAD1.760e-1230.22Argininosuccinate lyase OS=Novosphingobium aromati... [more]
ARLY_SACDO2.299e-1230.08Argininosuccinate lyase OS=Saccharomyces douglasii... [more]
ARLY_PSE142.299e-1234.48Argininosuccinate lyase OS=Pseudomonas syringae pv... [more]
ARLY_KINRD2.299e-1229.32Argininosuccinate lyase OS=Kineococcus radiotolera... [more]

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Properties
Property NameValue
Genbank descriptionC02006A09SK IF1 Citrus clementina cDNA clone C02006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288844 ID=CX288844; Name=CX288844; organism=Citrus clementina; type=EST; length=460bp
TAAAGAACCTACATTTGACAGCGTTAAGACAATTGTTGGAATGCTTGAAG
TTTCAGCAGAGTTTGCACAGAACATTACATTTAATGTGGAGAGAATAAAG
AAGGCTTTGCCAGCTGGTTATCTTGATGCCACAACCCTTGCCGATTATCT
TGTGAATAAGCAAATACCTTTTAGGACTTCCCATGATATAGTAGGAAAAG
CAGTTGCTTTGTGCGTGTCAAAGGAATGTCAGCTTCAGGATCTGAGTCTT
GATGAGATGAGAAGTCTAAACCCAGTGTTTGATAAGGATGTATACGAATA
TCTCGGAGTAGAAAATGCAATAAGGAAATTCAGCTCATTTGGTTCCACAG
GATCGGCATGCGTCACTGAACAACTACATTCTTGGGTTGCCAAGCTTGGA
ATCAACAGAAGTAGCTGTTAATTTACAAATGGAAGCAGAGATGAGTAAAA
TGAGATCAAG
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