CX288844

Overview
NameCX288844
Unique NameCX288844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_BACWK (Argininosuccinate lyase OS=Bacillus weihenstephanensis (strain KBAB4) GN=argH PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.912e-20
Identity = 46/117 (39.32%), Postives = 75/117 (64.10%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTG 352
            KE  FD+VKT+ G L + A   + +T N E++ +A+   + +AT +ADYL +K +PFR +H+IVGK V  C  K   L D+ L+  + ++P+F++D+YE L    A+++ +S G TG
Sbjct:  325 KEGMFDTVKTVEGCLHIMAGMIETMTVNKEKMGQAVTQDFSNATEIADYLASKGLPFRQAHEIVGKLVLHCTQKGIYLLDVPLETYKEMSPLFEEDLYEVLSPYAAVKRRNSAGGTG 441          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_BACCR (Argininosuccinate lyase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=argH PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.912e-20
Identity = 46/117 (39.32%), Postives = 74/117 (63.25%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTG 352
            KE  FD+VKT+ G L +     + +T N E++ +A+   + +AT +ADYL NK +PFR +H+IVGK V  C  K   L D+SL+  + ++ +F++D+YE L    A+++ +S G TG
Sbjct:  325 KEGMFDTVKTVEGCLHIMTGMLETMTVNKEKMGQAVTQDFSNATEIADYLANKGLPFRQAHEIVGKLVLYCTQKGIYLLDVSLETYKEMSSLFEEDLYEVLSPYAAVKRRNSAGGTG 441          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY1_RHILO (Argininosuccinate lyase 1 OS=Rhizobium loti GN=argH1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.912e-20
Identity = 49/133 (36.84%), Postives = 80/133 (60.15%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQ-IPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 397
            KE  FD+ +T+  ML        ++T N   +KKA  +G+  AT LAD+LV    +PFR +H + G+AVAL   K+  L+ LSL++++S+NP    D++  L V+N+++  +SFG T  + V +Q+  W  +L
Sbjct:  331 KESVFDAAETLDLMLAAMTGMVSDMTVNAAAMKKAAGSGHATATDLADWLVRTLGLPFREAHHVTGRAVALAEEKKVSLEKLSLEDLQSINPGITADIFSVLAVQNSVKSRTSFGGTAPSEVRKQIRYWKKRL 463          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLZ_SCHPO (Probable argininosuccinate lyase OS=Schizosaccharomyces pombe GN=argx PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.109e-20
Identity = 47/127 (37.01%), Postives = 77/127 (60.63%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHS 382
            KEP FDS KT++  +++       +T N E I K+L A  L AT LA+YLV K +PFR +H I G AV +   +   +  LS+++ +SL+P++++DV +    E+++ K  + G T  +CV EQ+ +
Sbjct:  329 KEPLFDSSKTVLDSIQILTGVLSTLTVNPENIAKSLTADML-ATDLAEYLVRKGVPFRETHHISGSAVRMAEERNTTIDKLSVEDFKSLHPLYEEDVADVFNYESSVEKRCAIGGTAKSCVLEQIQT 454          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_THEPX (Argininosuccinate lyase OS=Thermoanaerobacter sp. (strain X514) GN=argH PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.109e-20
Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGS 355
            KE  FD + T+   L+V  E  + I    + ++KA   GY++AT  ADYLV+K IPFRT+H+I GK V   + +   ++DL L+E++  + V D+DVYE + ++N ++K  + G+  S
Sbjct:  321 KEALFDGIDTLKMSLKVFTEMIKTIKVKTDNMEKAAKYGYMNATDFADYLVSKGIPFRTAHEIAGKVVLYAIERNLAIEDLPLNELKKFSDVIDEDVYEAIDLKNTLKKKKTIGAPTS 438          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_THEP3 (Argininosuccinate lyase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=argH PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.109e-20
Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGS 355
            KE  FD + T+   L+V  E  + I    + ++KA   GY++AT  ADYLV+K IPFRT+H+I GK V   + +   ++DL L+E++  + V D+DVYE + ++N ++K  + G+  S
Sbjct:  321 KEALFDGIDTLKMSLKVFTEMIKTIKVKTDNMEKAAKYGYMNATDFADYLVSKGIPFRTAHEIAGKVVLYAIERNLAIEDLPLNELKKFSDVIDEDVYEAIDLKNTLKKKKTIGAPTS 438          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_RHOBA (Argininosuccinate lyase OS=Rhodopirellula baltica GN=argH PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 5.109e-20
Identity = 51/132 (38.64%), Postives = 74/132 (56.06%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 397
            K P FD+  T   MLE++A   +      E I   +  GYLDATTL ++++ + +P RT+H +VG  V+  + +   L DL L+  + L+   D+ VYE LG  NAI  F S GST  A V EQ+  W ++L
Sbjct:  326 KPPLFDAFDTTRAMLELAAPIVRGAELKRESIAARIEKGYLDATTLMEWMIARGMPQRTAHHLVGAIVSEAMQQGVTLSDLPLETYQKLSDQIDESVYEVLGTSNAIAAFRSEGSTAPARVREQIKQWTSRL 457          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_PROM5 (Argininosuccinate lyase OS=Prochlorococcus marinus (strain MIT 9515) GN=argH PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.109e-20
Identity = 51/133 (38.35%), Postives = 80/133 (60.15%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFA-QNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 397
            KEP FD+V TI   L+       + I FNV+++  ++   + +AT LADYLV+KQ+PFR ++ IVG  V  C++K    +DL+L E ++ +  F +D+YE L   N ++  +S G TG   V  +L++W  KL
Sbjct:  325 KEPIFDTVDTISSCLKAMRILLDEGIEFNVDKLIDSVNNDFSNATDLADYLVSKQVPFRKAYQIVGDIVKYCLTKNILFKDLNLSEFQTFHDEFKEDIYENLNPMNVVKSRNSVGGTGFEQVEIELNNWKKKL 457          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_BACLD (Argininosuccinate lyase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=argH PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.109e-20
Identity = 50/125 (40.00%), Postives = 73/125 (58.40%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 376
            KE  FD+VKT+ G LE+ A   + +T N   +KKA    + +AT LADYL  K +PFR +H++VG+ V  C+ K   L  L  +E +  + +F++DVY  L   +A+ K  S G TG   VTE +
Sbjct:  325 KEGMFDTVKTVEGSLEIFAGMIKTMTVNKNMMKKATEQDFSNATELADYLAKKGMPFREAHEVVGRLVFTCIEKGIYLSGLPFEEFKKASGLFEEDVYIVLDPHHAVEKRMSEGGTGFKKVTEAI 449          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_BRUSU (Argininosuccinate lyase OS=Brucella suis GN=argH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.672e-20
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQ-IPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 397
            KE  FD+ + +   +   A   +++T NV  +KKA  +GY  AT LAD+LV    +PFR +H + G+AVAL  S++  L  LSL+E++S+NP    +V+ YL VE +++   SFG T    V  Q+  W  ++
Sbjct:  331 KEQVFDAAENLELAIAAMAGMVRDLTVNVAAMKKAAGSGYSTATDLADWLVRTLGLPFREAHHVTGRAVALAESRKVDLAKLSLEELQSINPAITAEVFGYLTVEKSVKSRQSFGGTAPQEVRRQIRYWKKRI 463          
The following BLAST results are available for this feature:
BLAST of CX288844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARLY_BACWK3.912e-2039.32Argininosuccinate lyase OS=Bacillus weihenstephane... [more]
ARLY_BACCR3.912e-2039.32Argininosuccinate lyase OS=Bacillus cereus (strain... [more]
ARLY1_RHILO3.912e-2036.84Argininosuccinate lyase 1 OS=Rhizobium loti GN=arg... [more]
ARLZ_SCHPO5.109e-2037.01Probable argininosuccinate lyase OS=Schizosaccharo... [more]
ARLY_THEPX5.109e-2038.14Argininosuccinate lyase OS=Thermoanaerobacter sp. ... [more]
ARLY_THEP35.109e-2038.14Argininosuccinate lyase OS=Thermoanaerobacter pseu... [more]
ARLY_RHOBA5.109e-2038.64Argininosuccinate lyase OS=Rhodopirellula baltica ... [more]
ARLY_PROM55.109e-2038.35Argininosuccinate lyase OS=Prochlorococcus marinus... [more]
ARLY_BACLD5.109e-2040.00Argininosuccinate lyase OS=Bacillus licheniformis ... [more]
ARLY_BRUSU6.672e-2037.59Argininosuccinate lyase OS=Brucella suis GN=argH P... [more]

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Properties
Property NameValue
Genbank descriptionC02006A09SK IF1 Citrus clementina cDNA clone C02006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288844 ID=CX288844; Name=CX288844; organism=Citrus clementina; type=EST; length=460bp
TAAAGAACCTACATTTGACAGCGTTAAGACAATTGTTGGAATGCTTGAAG
TTTCAGCAGAGTTTGCACAGAACATTACATTTAATGTGGAGAGAATAAAG
AAGGCTTTGCCAGCTGGTTATCTTGATGCCACAACCCTTGCCGATTATCT
TGTGAATAAGCAAATACCTTTTAGGACTTCCCATGATATAGTAGGAAAAG
CAGTTGCTTTGTGCGTGTCAAAGGAATGTCAGCTTCAGGATCTGAGTCTT
GATGAGATGAGAAGTCTAAACCCAGTGTTTGATAAGGATGTATACGAATA
TCTCGGAGTAGAAAATGCAATAAGGAAATTCAGCTCATTTGGTTCCACAG
GATCGGCATGCGTCACTGAACAACTACATTCTTGGGTTGCCAAGCTTGGA
ATCAACAGAAGTAGCTGTTAATTTACAAATGGAAGCAGAGATGAGTAAAA
TGAGATCAAG
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