CX288844

Overview
NameCX288844
Unique NameCX288844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_BRUSI (Argininosuccinate lyase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=argH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.672e-20
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 2 
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQ-IPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 397
            KE  FD+ + +   +   A   +++T NV  +KKA  +GY  AT LAD+LV    +PFR +H + G+AVAL  S++  L  LSL+E++S+NP    +V+ YL VE +++   SFG T    V  Q+  W  ++
Sbjct:  331 KEQVFDAAENLELAIAAMAGMVRDLTVNVAAMKKAAGSGYSTATDLADWLVRTLGLPFREAHHVTGRAVALAESRKVDLAKLSLEELQSINPAITAEVFGYLTVEKSVKSRQSFGGTAPQEVRRQIRYWKKRI 463
[Close]
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_BRUME (Argininosuccinate lyase OS=Brucella melitensis GN=argH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.672e-20
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 2 
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQ-IPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 397
            KE  FD+ + +   +   A   +++T NV  +KKA  +GY  AT LAD+LV    +PFR +H + G+AVAL  S++  L  LSL+E++S+NP    +V+ YL VE +++   SFG T    V  Q+  W  ++
Sbjct:  331 KEQVFDAAENLELAIAAMAGMVRDLTVNVAAMKKAAGSGYSTATDLADWLVRTLGLPFREAHHVTGRAVALAESRKVDLAKLSLEELQSINPAITAEVFGYLTVEKSVKSRQSFGGTAPQEVRRQIRYWKKRI 463
[Close]
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_BRUMB (Argininosuccinate lyase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=argH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.672e-20
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 2 
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQ-IPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 397
            KE  FD+ + +   +   A   +++T NV  +KKA  +GY  AT LAD+LV    +PFR +H + G+AVAL  S++  L  LSL+E++S+NP    +V+ YL VE +++   SFG T    V  Q+  W  ++
Sbjct:  331 KEQVFDAAENLELAIAAMAGMVRDLTVNVAAMKKAAGSGYSTATDLADWLVRTLGLPFREAHHVTGRAVALAESRKVDLAKLSLEELQSINPAITAEVFGYLTVEKSVKSRQSFGGTAPQEVRRQIRYWKKRI 463
[Close]
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_BRUC2 (Argininosuccinate lyase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=argH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.672e-20
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 2 
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQ-IPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 397
            KE  FD+ + +   +   A   +++T NV  +KKA  +GY  AT LAD+LV    +PFR +H + G+AVAL  S++  L  LSL+E++S+NP    +V+ YL VE +++   SFG T    V  Q+  W  ++
Sbjct:  331 KEQVFDAAENLELAIAAMAGMVRDLTVNVAAMKKAAGSGYSTATDLADWLVRTLGLPFREAHHVTGRAVALAESRKVDLAKLSLEELQSINPAITAEVFGYLTVEKSVKSRQSFGGTAPQEVRRQIRYWKKRI 463
[Close]
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_BRUAB (Argininosuccinate lyase OS=Brucella abortus GN=argH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.672e-20
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 2 
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQ-IPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 397
            KE  FD+ + +   +   A   +++T NV  +KKA  +GY  AT LAD+LV    +PFR +H + G+AVAL  S++  L  LSL+E++S+NP    +V+ YL VE +++   SFG T    V  Q+  W  ++
Sbjct:  331 KEQVFDAAENLELAIAAMAGMVRDLTVNVAAMKKAAGSGYSTATDLADWLVRTLGLPFREAHHVTGRAVALAESRKVDLAKLSLEELQSINPAITAEVFGYLTVEKSVKSRQSFGGTAPQEVRRQIRYWKKRI 463
[Close]
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_BRUA2 (Argininosuccinate lyase OS=Brucella abortus (strain 2308) GN=argH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.672e-20
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 2 
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQ-IPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 397
            KE  FD+ + +   +   A   +++T NV  +KKA  +GY  AT LAD+LV    +PFR +H + G+AVAL  S++  L  LSL+E++S+NP    +V+ YL VE +++   SFG T    V  Q+  W  ++
Sbjct:  331 KEQVFDAAENLELAIAAMAGMVRDLTVNVAAMKKAAGSGYSTATDLADWLVRTLGLPFREAHHVTGRAVALAESRKVDLAKLSLEELQSINPAITAEVFGYLTVEKSVKSRQSFGGTAPQEVRRQIRYWKKRI 463
[Close]
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_BRUA1 (Argininosuccinate lyase OS=Brucella abortus (strain S19) GN=argH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.672e-20
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 2 
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQ-IPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 397
            KE  FD+ + +   +   A   +++T NV  +KKA  +GY  AT LAD+LV    +PFR +H + G+AVAL  S++  L  LSL+E++S+NP    +V+ YL VE +++   SFG T    V  Q+  W  ++
Sbjct:  331 KEQVFDAAENLELAIAAMAGMVRDLTVNVAAMKKAAGSGYSTATDLADWLVRTLGLPFREAHHVTGRAVALAESRKVDLAKLSLEELQSINPAITAEVFGYLTVEKSVKSRQSFGGTAPQEVRRQIRYWKKRI 463
[Close]
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_BACC7 (Argininosuccinate lyase OS=Bacillus cereus (strain AH187) GN=argH PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.714e-20
Identity = 46/117 (39.32%), Postives = 74/117 (63.25%), Query Frame = 2 
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTG 352
            KE  FD+VKT+ G L + A   + +T N E++ +A+   + +AT +ADYL NK +PFR +H+IVGK V  C  K   L D+ L+  + ++ +F++D+YE L    A+++ +S G TG
Sbjct:  325 KEGMFDTVKTVEGCLHIMAGMLETMTVNKEKMGQAVTQDFSNATEIADYLANKGLPFRQAHEIVGKLVLHCTQKGIYLVDVPLETYKEMSSLFEEDLYEVLSPYAAVKRRNSAGGTG 441
[Close]
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_PELCD (Argininosuccinate lyase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=argH PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.138e-19
Identity = 40/125 (32.00%), Postives = 77/125 (61.60%), Query Frame = 2 
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 376
            KEP FD++ T+ G L++ A+    ++   + +++A   G+  AT +ADY+V K IPFR +H+IVGK V  C+  + Q+++L+L+E ++ +   D D+Y+++ +E ++    + G T    V  ++
Sbjct:  326 KEPLFDTIDTVKGSLKIFADMIAQMSIRADNMREAAARGFSTATDVADYVVRKGIPFRDAHEIVGKTVRYCIEHDKQIEELTLEEFKAFSEHIDSDIYDFITLEASVDSRRATGGTAREAVAREI 450
[Close]
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_SYMTH (Argininosuccinate lyase OS=Symbiobacterium thermophilum GN=argH PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.486e-19
Identity = 48/125 (38.40%), Postives = 75/125 (60.00%), Query Frame = 2 
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQL 376
            KE  FD+V T+   L V       + FN ER+ +A+   + +AT +ADYLV K +PFR +H++VGKAV  CV +   L DL+L+E ++ + +F+ D+Y+ +  E  + + +S G T  A V  QL
Sbjct:  325 KERLFDAVDTLKACLTVMTGMLATLKFNRERMAQAVRRDFSNATDMADYLVKKGMPFREAHEVVGKAVLYCVERGKFLADLTLEEFKAFSALFEADIYQAIAPETCVSQRTSLGGTAPAEVERQL 449
The following BLAST results are available for this feature:
BLAST of CX288844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARLY_BRUSI6.672e-2037.59Argininosuccinate lyase OS=Brucella suis (strain A... [more]
ARLY_BRUME6.672e-2037.59Argininosuccinate lyase OS=Brucella melitensis GN=... [more]
ARLY_BRUMB6.672e-2037.59Argininosuccinate lyase OS=Brucella melitensis bio... [more]
ARLY_BRUC26.672e-2037.59Argininosuccinate lyase OS=Brucella canis (strain ... [more]
ARLY_BRUAB6.672e-2037.59Argininosuccinate lyase OS=Brucella abortus GN=arg... [more]
ARLY_BRUA26.672e-2037.59Argininosuccinate lyase OS=Brucella abortus (strai... [more]
ARLY_BRUA16.672e-2037.59Argininosuccinate lyase OS=Brucella abortus (strai... [more]
ARLY_BACC78.714e-2039.32Argininosuccinate lyase OS=Bacillus cereus (strain... [more]
ARLY_PELCD1.138e-1932.00Argininosuccinate lyase OS=Pelobacter carbinolicus... [more]
ARLY_SYMTH1.486e-1938.40Argininosuccinate lyase OS=Symbiobacterium thermop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02006A09SK IF1 Citrus clementina cDNA clone C02006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288844 ID=CX288844; Name=CX288844; organism=Citrus clementina; type=EST; length=460bp
TAAAGAACCTACATTTGACAGCGTTAAGACAATTGTTGGAATGCTTGAAG
TTTCAGCAGAGTTTGCACAGAACATTACATTTAATGTGGAGAGAATAAAG
AAGGCTTTGCCAGCTGGTTATCTTGATGCCACAACCCTTGCCGATTATCT
TGTGAATAAGCAAATACCTTTTAGGACTTCCCATGATATAGTAGGAAAAG
CAGTTGCTTTGTGCGTGTCAAAGGAATGTCAGCTTCAGGATCTGAGTCTT
GATGAGATGAGAAGTCTAAACCCAGTGTTTGATAAGGATGTATACGAATA
TCTCGGAGTAGAAAATGCAATAAGGAAATTCAGCTCATTTGGTTCCACAG
GATCGGCATGCGTCACTGAACAACTACATTCTTGGGTTGCCAAGCTTGGA
ATCAACAGAAGTAGCTGTTAATTTACAAATGGAAGCAGAGATGAGTAAAA
TGAGATCAAG
back to top