CX288844

Overview
NameCX288844
Unique NameCX288844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length460
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_CLOBJ (Argininosuccinate lyase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=argH PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.325e-19
Identity = 41/109 (37.61%), Postives = 69/109 (63.30%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRK 328
            KEP FD+  T++  L+V       +  N E + K++  G+L+AT  ADYLVNK + FR +H ++G+ V  C  K   ++DLSL+E++  + +F +D+YE++  +N+I K
Sbjct:  323 KEPFFDAKDTVISCLKVMEGIISTLKVNKENLMKSVKKGFLNATEAADYLVNKGMAFRDAHKVIGEVVIYCEDKNSAIEDLSLEELKQFSDLFCEDIYEFIDYKNSINK 431          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_CLOBH (Argininosuccinate lyase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=argH PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.325e-19
Identity = 41/109 (37.61%), Postives = 69/109 (63.30%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRK 328
            KEP FD+  T++  L+V       +  N E + K++  G+L+AT  ADYLVNK + FR +H ++G+ V  C  K   ++DLSL+E++  + +F +D+YE++  +N+I K
Sbjct:  323 KEPFFDAKDTVISCLKVMEGIISTLKVNKENLMKSVKKGFLNATEAADYLVNKGMAFRDAHKVIGEVVIYCEDKNSAIEDLSLEELKQFSDLFCEDIYEFIDYKNSINK 431          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_CLOB6 (Argininosuccinate lyase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=argH PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.325e-19
Identity = 41/109 (37.61%), Postives = 69/109 (63.30%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRK 328
            KEP FD+  T++  L+V       +  N E + K++  G+L+AT  ADYLVNK + FR +H ++G+ V  C  K   ++DLSL+E++  + +F +D+YE++  +N+I K
Sbjct:  323 KEPFFDAKDTVISCLKVMEGIISTLKVNKENLMKSVKKGFLNATEAADYLVNKGMAFRDAHKVIGEVVIYCEDKNSAIEDLSLEELKQFSDLFCEDIYEFIDYKNSINK 431          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_CLOB1 (Argininosuccinate lyase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=argH PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.325e-19
Identity = 41/109 (37.61%), Postives = 69/109 (63.30%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRK 328
            KEP FD+  T++  L+V       +  N E + K++  G+L+AT  ADYLVNK + FR +H ++G+ V  C  K   ++DLSL+E++  + +F +D+YE++  +N+I K
Sbjct:  323 KEPFFDAKDTVISCLKVMEGIISTLKVNKENLMKSVKKGFLNATEAADYLVNKGMAFRDAHKVIGEVVIYCEDKNSAIEDLSLEELKQFSDLFCEDIYEFIDYKNSINK 431          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_AZOSE (Argininosuccinate lyase OS=Azoarcus sp. (strain EbN1) GN=argH PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.325e-19
Identity = 46/116 (39.66%), Postives = 67/116 (57.76%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGST 349
            KEP FD+  T++  L + A+    I    + ++ AL  GY  AT LADYLV K +PFR +H+ V  AV    +K C L D SLDE+R+ +P+  +DV+  L VE ++   +  G T
Sbjct:  333 KEPLFDTADTVIDTLRIYADMITGIRVKADAMRDALKQGYATATDLADYLVKKGLPFRDAHEAVALAVRAAEAKGCDLPDFSLDELRAFSPLVGEDVFAVLTVEGSLASRAHVGGT 448          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_VIBPA (Bifunctional protein argH OS=Vibrio parahaemolyticus GN=argH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.648e-19
Identity = 50/114 (43.86%), Postives = 70/114 (61.40%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFG 343
            KE  FD++ T    +E++A     I  N ER  +A   GY +AT LADYLV K IPFR +H IVG AV   ++K C L++LSL E++  + V D DVY+ L +E+ + K S+ G
Sbjct:  325 KEGLFDALDTWNDCMEMAALCFDGIKVNGERTLEAAKQGYANATELADYLVAKGIPFREAHHIVGVAVVGAIAKGCALEELSLQELQEFSDVIDNDVYDILTIESCLEKRSALG 438          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_HERAR (Argininosuccinate lyase OS=Herminiimonas arsenicoxydans GN=argH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.648e-19
Identity = 49/132 (37.12%), Postives = 74/132 (56.06%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTGSACVTEQLHSWVAKL 397
            KEP FD+V T+V  L + A+ A  IT   + ++ A   GY  AT LADYLV K +PFR +H+ V  AV  CV +   L DL+L+EM++ + + + D++  L +E ++   +  G T    V   +    AKL
Sbjct:  332 KEPLFDTVDTVVDTLRIFADMATGITVKPDAMRAAALQGYATATDLADYLVKKGLPFRDAHEAVAHAVRACVDRGIDLSDLTLEEMQAFSKLIEADIFAVLTLEGSVAARNHVGGTAPQQVRAAIARHRAKL 463          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_CLOBM (Argininosuccinate lyase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=argH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.648e-19
Identity = 41/109 (37.61%), Postives = 69/109 (63.30%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRK 328
            KEP FD+  T++  L+V       +  N E + K++  G+L+AT  ADYLVNK + FR +H ++G+ V  C  K   ++DLSL+E++  + +F +D+YE++  +N+I K
Sbjct:  323 KEPFFDAKDTVISCLKVMEGIISTLKVNKENLMKSVKKGFLNATEAADYLVNKGMAFRDAHKVIGEIVIYCEDKNSAIEDLSLEELKQFSDLFCEDIYEFIDYKNSINK 431          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_BACAH (Argininosuccinate lyase OS=Bacillus thuringiensis (strain Al Hakam) GN=argH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.648e-19
Identity = 45/117 (38.46%), Postives = 74/117 (63.25%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFGSTG 352
            KE  FD+VKT+ G L + A   + +T N E++ +A+   + +AT +ADYL +K +PFR +H+IVGK V  C  K   L D+ L+  + ++ +F++D+YE L    A+++ +S G TG
Sbjct:  325 KEGMFDTVKTVEGCLHIMAGMLETMTVNKEKMGQAVTKDFSNATEIADYLASKGLPFRQAHEIVGKLVLHCTQKGIYLVDVPLETYKEMSLLFEEDLYEVLSPYAAVKRRNSAGGTG 441          
BLAST of CX288844 vs. ExPASy Swiss-Prot
Match: ARLY_VIBVY (Bifunctional protein argH OS=Vibrio vulnificus (strain YJ016) GN=argH PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.377e-19
Identity = 48/114 (42.11%), Postives = 73/114 (64.04%), Query Frame = 2
Query:    2 KEPTFDSVKTIVGMLEVSAEFAQNITFNVERIKKALPAGYLDATTLADYLVNKQIPFRTSHDIVGKAVALCVSKECQLQDLSLDEMRSLNPVFDKDVYEYLGVENAIRKFSSFG 343
            KE  FD++ T    +E++A     I  N ER  +A   GY ++T LADYLV K IPFR +H IVG AV   +++ C L++LSL++++S +PV + DVY+ L +E+ + K S+ G
Sbjct:  325 KEGLFDALDTWNDCMEMAALCFDGIKVNGERTLEAAKQGYANSTELADYLVAKGIPFREAHHIVGVAVVGAIAQGCALEELSLEQLQSFSPVIEADVYQILTIESCLEKRSALG 438          
The following BLAST results are available for this feature:
BLAST of CX288844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARLY_CLOBJ4.325e-1937.61Argininosuccinate lyase OS=Clostridium botulinum (... [more]
ARLY_CLOBH4.325e-1937.61Argininosuccinate lyase OS=Clostridium botulinum (... [more]
ARLY_CLOB64.325e-1937.61Argininosuccinate lyase OS=Clostridium botulinum (... [more]
ARLY_CLOB14.325e-1937.61Argininosuccinate lyase OS=Clostridium botulinum (... [more]
ARLY_AZOSE4.325e-1939.66Argininosuccinate lyase OS=Azoarcus sp. (strain Eb... [more]
ARLY_VIBPA5.648e-1943.86Bifunctional protein argH OS=Vibrio parahaemolytic... [more]
ARLY_HERAR5.648e-1937.12Argininosuccinate lyase OS=Herminiimonas arsenicox... [more]
ARLY_CLOBM5.648e-1937.61Argininosuccinate lyase OS=Clostridium botulinum (... [more]
ARLY_BACAH5.648e-1938.46Argininosuccinate lyase OS=Bacillus thuringiensis ... [more]
ARLY_VIBVY7.377e-1942.11Bifunctional protein argH OS=Vibrio vulnificus (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02006A09SK IF1 Citrus clementina cDNA clone C02006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288844 ID=CX288844; Name=CX288844; organism=Citrus clementina; type=EST; length=460bp
TAAAGAACCTACATTTGACAGCGTTAAGACAATTGTTGGAATGCTTGAAG
TTTCAGCAGAGTTTGCACAGAACATTACATTTAATGTGGAGAGAATAAAG
AAGGCTTTGCCAGCTGGTTATCTTGATGCCACAACCCTTGCCGATTATCT
TGTGAATAAGCAAATACCTTTTAGGACTTCCCATGATATAGTAGGAAAAG
CAGTTGCTTTGTGCGTGTCAAAGGAATGTCAGCTTCAGGATCTGAGTCTT
GATGAGATGAGAAGTCTAAACCCAGTGTTTGATAAGGATGTATACGAATA
TCTCGGAGTAGAAAATGCAATAAGGAAATTCAGCTCATTTGGTTCCACAG
GATCGGCATGCGTCACTGAACAACTACATTCTTGGGTTGCCAAGCTTGGA
ATCAACAGAAGTAGCTGTTAATTTACAAATGGAAGCAGAGATGAGTAAAA
TGAGATCAAG
back to top