CX288851

Overview
NameCX288851
Unique NameCX288851
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.521e-35
Identity = 72/94 (76.60%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 EGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 282
            EGYR+                AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHI DPVANNAWAYATNFVPGK
Sbjct:  172 EGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.230e-34
Identity = 71/94 (75.53%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 EGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 282
            EGYRI                AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  172 EGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.606e-34
Identity = 71/94 (75.53%), Postives = 74/94 (78.72%), Query Frame = 1
Query:    1 EGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 282
            EGYR+                 FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  185 EGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.606e-34
Identity = 71/94 (75.53%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 EGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 282
            EGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  113 EGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.606e-34
Identity = 71/94 (75.53%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 EGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 282
            EGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  162 EGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255          
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.740e-34
Identity = 70/94 (74.47%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 EGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 282
            EGYRI                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  168 EGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261          
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.578e-34
Identity = 70/94 (74.47%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 EGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 282
            EGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:  176 EGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269          
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.578e-34
Identity = 71/93 (76.34%), Postives = 74/93 (79.57%), Query Frame = 1
Query:    1 EGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 279
            EGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWAYATNFVPG
Sbjct:  169 EGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.673e-34
Identity = 70/94 (74.47%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 EGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 282
            EGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  181 EGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274          
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.104e-34
Identity = 68/94 (72.34%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 EGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 282
            EGYR+                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWAYATNFVPGK
Sbjct:  174 EGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267          
The following BLAST results are available for this feature:
BLAST of CX288851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB24_SOLLC5.521e-3576.60Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_ORYSJ1.230e-3475.53Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2A_PINSY1.606e-3475.53Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_CUCSA1.606e-3475.53Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA1.606e-3475.53Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_ORYSJ2.740e-3474.47Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_PEA3.578e-3474.47Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_MAIZE3.578e-3476.34Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2B_PINSY4.673e-3474.47Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB27_TOBAC6.104e-3472.34Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC02006B05SK IF1 Citrus clementina cDNA clone C02006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288851 ID=CX288851; Name=CX288851; organism=Citrus clementina; type=EST; length=566bp
GAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACT
TTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCGATC
AATTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATG
TTCTCCATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCC
AATTGAGAACCTCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCT
GGGCTTATGCCACTAACTTTGTTCCCGGAAAGTAAAGAAACTCATGACTT
GATGGTGTCTTTTTCAGCTGTAACATTATTCTATGTATCGTATGTGCTTT
TGTGGAAAACTCTGTCATGGACTTATTAGTAAAAAAAAAAAAAAAAAAAC
TCGAGGCGTGAAGCAAAGCGCTTTGCTGATCTTACAGCTGATGAGACTAC
TGATTTATGGCTCACAGCCCAAAAGGTTGGCAAACAGCTCGAAAGCTACC
ACAAGGGTTCATCAACAACATTTGCCATCCAAGTAAGTGCTGTCTCTAGT
GGACTTCTAATCTCAT
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