CX288851

Overview
NameCX288851
Unique NameCX288851
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.713e-32
Identity = 67/94 (71.28%), Postives = 73/94 (77.66%), Query Frame = 1
Query:    1 EGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 282
            EGYRI                +FDPLGLA+ P+ FAELKVKELKNGRLAMFSMFGFFV AIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:  135 EGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.461e-32
Identity = 67/94 (71.28%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 EGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 282
            EGYRI                +FDPLGLADDP+  AELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYAT   PGK
Sbjct:  163 EGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.745e-32
Identity = 66/93 (70.97%), Postives = 71/93 (76.34%), Query Frame = 1
Query:    1 EGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 279
            EGYR+                +FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPVANNAWAYA    PG
Sbjct:  175 EGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.745e-32
Identity = 63/73 (86.30%), Postives = 69/73 (94.52%), Query Frame = 1
Query:   64 AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 282
            +FDPLGLA DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  194 SFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.662e-31
Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 1
Query:    1 EGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 282
            EGYR+                +FDPLGLA+DP+ FAELKVKE KNGRLAMFSMFGFF+QAIVTGKGP+ENL DH+ DPV NNAW+YATNFVP K
Sbjct:  174 EGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.249e-31
Identity = 66/94 (70.21%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 EGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 282
            EGYRI                +FDPLGLA+ P  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E+L DHIADPV NNAW  ATNFVPGK
Sbjct:  173 EGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.400e-30
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 1
Query:   67 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 279
            FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct:  194 FDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.135e-30
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 1
Query:   67 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 279
            FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPVANNAW +AT F PG
Sbjct:  197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.121e-30
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 1
Query:   64 AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 282
            +FDPL    DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:   52 SFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.912e-29
Identity = 62/92 (67.39%), Postives = 68/92 (73.91%), Query Frame = 1
Query:    1 EGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 276
            EGYR+                AFDPLGLADDPD FAELKVKE+KNGRLAMF+  GFFVQAIVTGKGPIENL DH+A+P  NNA+AYAT F P
Sbjct:  181 EGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
The following BLAST results are available for this feature:
BLAST of CX288851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB21_PEA5.713e-3271.28Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB22_SOYBN7.461e-3271.28Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_PHYPA9.745e-3270.97Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SINAL9.745e-3286.30Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_PETSP1.662e-3168.09Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_WHEAT8.249e-3170.21Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_SOLLC2.400e-3085.92Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU3.135e-3084.51Chlorophyll a-b binding protein of LHCII type III,... [more]
CB21_RAPSA9.121e-3082.19Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2_DUNSA5.912e-2967.39Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC02006B05SK IF1 Citrus clementina cDNA clone C02006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288851 ID=CX288851; Name=CX288851; organism=Citrus clementina; type=EST; length=566bp
GAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACT
TTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCGATC
AATTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATG
TTCTCCATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCC
AATTGAGAACCTCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCT
GGGCTTATGCCACTAACTTTGTTCCCGGAAAGTAAAGAAACTCATGACTT
GATGGTGTCTTTTTCAGCTGTAACATTATTCTATGTATCGTATGTGCTTT
TGTGGAAAACTCTGTCATGGACTTATTAGTAAAAAAAAAAAAAAAAAAAC
TCGAGGCGTGAAGCAAAGCGCTTTGCTGATCTTACAGCTGATGAGACTAC
TGATTTATGGCTCACAGCCCAAAAGGTTGGCAAACAGCTCGAAAGCTACC
ACAAGGGTTCATCAACAACATTTGCCATCCAAGTAAGTGCTGTCTCTAGT
GGACTTCTAATCTCAT
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