CX288851

Overview
NameCX288851
Unique NameCX288851
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   67 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 237
            FDPLGLA DP++ A+L++ E+K+ RLAM +  GF VQA  TGKGP+ N   H++DP+
Sbjct:  223 FDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279
[Close]
BLAST of CX288851 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.259e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   67 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 237
            FDPLGLA DP + A+L++ E+K+ RLAM    GF VQA  TGKGP+ N   H++DP+
Sbjct:  220 FDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276
The following BLAST results are available for this feature:
BLAST of CX288851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB4A_ARATH8.576e-1254.39Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH3.259e-1154.39Chlorophyll a-b binding protein CP29.2, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionC02006B05SK IF1 Citrus clementina cDNA clone C02006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288851 ID=CX288851; Name=CX288851; organism=Citrus clementina; type=EST; length=566bp
GAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACT
TTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCGATC
AATTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATG
TTCTCCATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCC
AATTGAGAACCTCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCT
GGGCTTATGCCACTAACTTTGTTCCCGGAAAGTAAAGAAACTCATGACTT
GATGGTGTCTTTTTCAGCTGTAACATTATTCTATGTATCGTATGTGCTTT
TGTGGAAAACTCTGTCATGGACTTATTAGTAAAAAAAAAAAAAAAAAAAC
TCGAGGCGTGAAGCAAAGCGCTTTGCTGATCTTACAGCTGATGAGACTAC
TGATTTATGGCTCACAGCCCAAAAGGTTGGCAAACAGCTCGAAAGCTACC
ACAAGGGTTCATCAACAACATTTGCCATCCAAGTAAGTGCTGTCTCTAGT
GGACTTCTAATCTCAT
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