CX288855

Overview
NameCX288855
Unique NameCX288855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5076 contig Ccv1_Contig5076:183..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288855 vs. ExPASy Swiss-Prot
Match: NCB5R_ASPNC (NADH-cytochrome b5 reductase 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=cbr1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.262e-19
Identity = 43/93 (46.24%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  262 SKKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHH 540
            S KP+  L+P +F+ F L ++  +SHNV  + F LP PT +LGLPIGQHIS       G+EV++ YTP + D++ G+F+L++K YPQG +S +
Sbjct:   48 SNKPRKVLNPGDFQHFTLKEKNDISHNVTVYRFALPRPTDILGLPIGQHISLAATIG-GKEVVRSYTPISSDNEAGYFDLLVKAYPQGNISKY 139          
BLAST of CX288855 vs. ExPASy Swiss-Prot
Match: NCB5R_AJECN (NADH-cytochrome b5 reductase 1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=CBR1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.262e-19
Identity = 44/97 (45.36%), Postives = 69/97 (71.13%), Query Frame = 1
Query:  253 LYSSKKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGK-DSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHH 540
            ++S+++ KV L+P  F+ F+L ++  +SHNVA + F LP PT +LGLPIGQHIS     + Q +E+++ YTP + D + G+F+L++K YPQG +S H
Sbjct:   49 VFSNRQRKV-LNPTEFQNFELKEKTIVSHNVAIYRFALPRPTDILGLPIGQHISLAATIEGQTKEIMRSYTPISSDQEAGYFDLLVKAYPQGNISKH 144          
BLAST of CX288855 vs. ExPASy Swiss-Prot
Match: NCB5R_NEOFI (NADH-cytochrome b5 reductase 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=cbr1 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 8.975e-19
Identity = 42/92 (45.65%), Postives = 63/92 (68.48%), Query Frame = 1
Query:  268 KPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGK-DSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHH 540
            KP+  L+P  F+EF L ++  +SHNV  + F LP P  +LGLPIGQHIS     + Q +EV++ YTP + D++ G+F+L++K YPQG +S +
Sbjct:   52 KPRKVLNPTEFQEFVLKEKTDISHNVCIYRFALPRPADILGLPIGQHISLAATIEGQPKEVVRSYTPISSDNEAGYFDLLVKAYPQGNISKY 143          
BLAST of CX288855 vs. ExPASy Swiss-Prot
Match: NCB5R_LODEL (NADH-cytochrome b5 reductase 1 OS=Lodderomyces elongisporus GN=CBR1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.975e-19
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  262 SKKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFRE 549
            SKK   +L P+ F++F L+ + Q+SHN A + F LP PT  L LPIGQHIS  G    G+EV++ YTP +L    GHF+L+IK Y  G +S H  E
Sbjct:   47 SKKGSPALIPDKFQKFPLISKTQVSHNSAIYRFGLPNPTDTLNLPIGQHISI-GTIIDGKEVVRSYTPISLGDQQGHFDLLIKTYENGNISRHVAE 141          
BLAST of CX288855 vs. ExPASy Swiss-Prot
Match: NCB5R_YARLI (NADH-cytochrome b5 reductase 1 OS=Yarrowia lipolytica GN=CBR1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.172e-18
Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  250 YLYSSKKPKVSLDPEN--FKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLD-SDVGHFELVIKMYPQGRMSHHFREM 552
            Y +S+ KPK  L   +  FKEF L+++  LSHN A + F LP P+ VLGLPIGQH+S    +  G+EV++ YTPT+ D  D G+F+++IK YPQG +S +  E+
Sbjct:   31 YFFSNSKPKAVLQRGDTAFKEFPLIQKTVLSHNSAIYRFGLPRPSHVLGLPIGQHVSL-SANIGGKEVLRSYTPTSSDLYDKGYFDILIKTYPQGNISKYVSEL 133          
BLAST of CX288855 vs. ExPASy Swiss-Prot
Match: NCB5R_NEUCR (NADH-cytochrome b5 reductase 1 OS=Neurospora crassa GN=cbr-1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.531e-18
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  256 YSSKKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHIS----CRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREM 552
            Y    PK  L P  F+EF+L ++  +SHNVA + F+LPTP SVLGLPIGQHIS        D   +E+++ YTP + D   G+F+L+IK YP G +S H   +
Sbjct:   49 YFRMLPKKVLKPAVFQEFELKEKTIISHNVAIYRFKLPTPDSVLGLPIGQHISIGAAIEQPDGSTKEIVRSYTPISGDHQPGYFDLLIKSYPTGNISKHMASL 151          
BLAST of CX288855 vs. ExPASy Swiss-Prot
Match: NCB5R_MAGGR (NADH-cytochrome b5 reductase 1 OS=Magnaporthe grisea GN=CBR1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.454e-18
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  268 KPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRG----KDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHH 540
            KPK  LDP  F+EF+L ++  +SHNVA +  +LP+P+S+LGLPIGQHIS        D   +EV++ YTP + D   G+ +L+IK YP G +S +
Sbjct:   52 KPKKVLDPTKFQEFELKEKTIISHNVAIYRIQLPSPSSILGLPIGQHISIGADIPQPDGSSKEVVRSYTPISGDEQPGYVDLLIKSYPTGNISKY 146          
BLAST of CX288855 vs. ExPASy Swiss-Prot
Match: NCB5R_PICST (NADH-cytochrome b5 reductase 1 OS=Pichia stipitis GN=CBR1 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.887e-17
Identity = 42/97 (43.30%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  250 YLYSSKKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHH 540
            ++  SKK    L P+ F++F L+++ ++SHN + + F LP  T  LGLPIGQHIS  G    G+EV++ YTP + D ++G+F+L+IK Y  G +S H
Sbjct:   27 FVQQSKKNTPVLKPDTFQKFPLIEKTRVSHNSSVYRFGLPKSTDRLGLPIGQHISI-GATIGGKEVVRSYTPISTDDELGYFDLLIKTYENGNISKH 122          
BLAST of CX288855 vs. ExPASy Swiss-Prot
Match: NCB5R_PICGU (NADH-cytochrome b5 reductase 1 OS=Pichia guilliermondii GN=CBR1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.887e-17
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  262 SKKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHH 540
            +KK    L P+ F++F L+++ +LSHN   + F LP  T  LGLPIGQHIS  G    G+EV++ YTP + D ++G+F+L+IK Y QG +S H
Sbjct:   31 NKKNGPVLKPDVFQKFPLIEKTRLSHNTCIYRFGLPKSTDRLGLPIGQHISI-GATINGKEVVRSYTPISRDDELGYFDLLIKTYEQGNISRH 122          
BLAST of CX288855 vs. ExPASy Swiss-Prot
Match: NCB5R_CANGA (NADH-cytochrome b5 reductase 1 OS=Candida glabrata GN=CBR1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.432e-17
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = 1
Query:  259 SSKKPKVSLDPENFKEFKLVKRLQLSHNVAKFTFELPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSD-VGHFELVIKMYPQGRMSHHFREM 552
            S K+   +L    F+EF+LV++ QL+HN AK+ F+L   + VLGLPIGQHI+ +     G+ V + YTPT+LD + VG FEL++K YP+G +S H  +M
Sbjct:   29 SQKEAVKALLKTEFREFELVEKEQLTHNTAKYKFKLADESHVLGLPIGQHITVK-TIIGGKPVSRSYTPTSLDEECVGFFELLVKSYPEGNISKHIGDM 126          
The following BLAST results are available for this feature:
BLAST of CX288855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
NCB5R_ASPNC5.262e-1946.24NADH-cytochrome b5 reductase 1 OS=Aspergillus nige... [more]
NCB5R_AJECN5.262e-1945.36NADH-cytochrome b5 reductase 1 OS=Ajellomyces caps... [more]
NCB5R_NEOFI8.975e-1945.65NADH-cytochrome b5 reductase 1 OS=Neosartorya fisc... [more]
NCB5R_LODEL8.975e-1947.92NADH-cytochrome b5 reductase 1 OS=Lodderomyces elo... [more]
NCB5R_YARLI1.172e-1847.12NADH-cytochrome b5 reductase 1 OS=Yarrowia lipolyt... [more]
NCB5R_NEUCR1.531e-1845.63NADH-cytochrome b5 reductase 1 OS=Neurospora crass... [more]
NCB5R_MAGGR4.454e-1846.32NADH-cytochrome b5 reductase 1 OS=Magnaporthe gris... [more]
NCB5R_PICST2.887e-1743.30NADH-cytochrome b5 reductase 1 OS=Pichia stipitis ... [more]
NCB5R_PICGU2.887e-1746.24NADH-cytochrome b5 reductase 1 OS=Pichia guillierm... [more]
NCB5R_CANGA6.432e-1746.46NADH-cytochrome b5 reductase 1 OS=Candida glabrata... [more]

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Properties
Property NameValue
Genbank descriptionC02006B09SK IF1 Citrus clementina cDNA clone C02006B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288855 ID=CX288855; Name=CX288855; organism=Citrus clementina; type=EST; length=553bp
GAAGATAAGAAATGGAATAAACCGCACACTATTTTCTCTCCCACCCATTT
ACTGGTTCCATTTCTTGTTTTGATTTTTGAGTTAAAAATTTATTCTTTAT
ATACATATATTGATAAATCCGAGGCTTTTAGTTCTTCTATTGGTGAGCTT
TTCTGTATCATCATGGATATGGAATATCTGCAGAACTTAGATGTTCAGCT
TCTCGTTGGTGGAGCTGTGGCTGTTTTGGCCATTGCTGTTGGTGCTGCTT
ACTTGTATTCCTCTAAGAAGCCCAAAGTTTCCTTAGATCCTGAGAATTTC
AAGGAGTTTAAGCTTGTCAAGCGATTACAGCTGAGCCATAATGTGGCAAA
GTTCACATTTGAACTCCCAACGCCTACATCGGTTTTGGGTCTTCCAATTG
GACAACATATAAGTTGCAGGGGCAAGGATAGTCAGGGTGAAGAGGTTATT
AAACCATATACCCCAACCACATTGGATTCTGATGTTGGTCATTTTGAATT
GGTTATTAAGATGTACCCCCAAGGAAGGATGTCACACCATTTCCGTGAGA
TGC
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