CX288860

Overview
NameCX288860
Unique NameCX288860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP393_ARATH (Pentatricopeptide repeat-containing protein At5g18950 OS=Arabidopsis thaliana GN=At5g18950 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.364e-17
Identity = 50/180 (27.78%), Postives = 93/180 (51.67%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDL 548
            EA  +   + +KG  P+ V+Y T+     +   +     L+ +M + G  P+ F YN++I    + G+++     + E+  +     ++S N++I     +G  DEA   FK M E G +P+ +TY+ LI+ F K +KVE   +L+ ++ A G  P+ + Y  L+  L+ S   A +++L
Sbjct:  301 EAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNVMIHGHFKRGEISLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNALIKGFCKENKVEKGLKLYKELKALGLKPSGMAYAALVRNLKMSDSVATSLNL 480          

HSP 2 Score: 81.6481 bits (200), Expect = 3.128e-15
Identity = 45/179 (25.14%), Postives = 85/179 (47.49%), Query Frame = 3
Query:   54 PNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSI 590
            P+  +Y  +   L   K+    + +++ +K  G +PD   Y  +I  F   G +  A K++ E+     +P+  +YN +I+   K G +      + EM   G+   +++ +T+I+ F    K + A  +F  M   G +PN +TYN L+    +  +  + + LY +LK  GL P  +
Sbjct:  281 PSMYIYQKIIKGLCMNKKQLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNVMIHGHFKRGEISLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNALIKGFCKENKVEKGLKLYKELKALGLKPSGM 459          

HSP 3 Score: 75.8702 bits (185), Expect = 1.716e-13
Identity = 44/196 (22.45%), Postives = 95/196 (48.47%), Query Frame = 3
Query:    6 AEAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            +E  +LL +  ++G+DP   +Y  + S   ++   + + ++   M      P ++ Y  +I       K  EA  +F+ L++    PD + Y ++I    + G L  A   + EM +KG  P+   Y+ +I    K  ++ +    +++ML  G    +++ N ++      G++ EA +++  + + G+TP++IT
Sbjct:  230 SEGYELLKQGLKQGLDPGQYVYAKLISGFCEIGNYACMSEVLHTMIAWNHFPSMYIYQKIIKGLCMNKKQLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNVMIHGHFKRGEISLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETGVTPNAIT 425          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP368_ARATH (Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana GN=At5g08310 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.364e-17
Identity = 52/193 (26.94%), Postives = 99/193 (51.30%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDS 587
            +A   LD +  +G   + V        L K + +    +L++ +  +G  PDV  Y++LI +  +A +  EA  +F E+ +   KP + +YNS+I+   K G +D        M E   +PDV+TY++LI     + +   A   +++M  + C PN +T+  L+  L + G + EA+  + +++++ + PDS
Sbjct:  562 DACKYLDDVAGEGFLGHMVASTAAIDGLIKNEGVDRGLELFRDICANGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDS 754          

HSP 2 Score: 85.8853 bits (211), Expect = 1.658e-16
Identity = 52/167 (31.14%), Postives = 86/167 (51.50%), Query Frame = 3
Query:    3 TAEAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILL 503
            T EA  L +++  KG+ P    YN++     K  +I        +M +D  +PDV TY  LI     +G+ +EAI  + E++  +C P+ I++ +LI  L K G   EA + F+EM+EK   PD   Y +L+  F  ++ +     +F +M+ +G  P  V  N +L
Sbjct:  630 TMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENINAGFGIFREMVHKGRFPVSVDRNYML 796          

HSP 3 Score: 79.337 bits (194), Expect = 1.552e-14
Identity = 46/195 (23.59%), Postives = 91/195 (46.67%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            E++ LL ++ + G++P+    N ++  L +        DL +KM+  G  P +     L+      G+  +A K  +++        +++  + I+ L KN  +D     F+++   G  PDV+ Y  LI+   K  +   A  LF++M+++G  P + TYN ++D   + G     +    ++ +    PD IT
Sbjct:  492 ESLKLLGEMKDAGVEPSQFTLNCIYGCLAERCDFVGALDLLKKMRFYGFEPWIKHTTFLVKKLCENGRAVDACKYLDDVAGEGFLGHMVASTAAIDGLIKNEGVDRGLELFRDICANGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVIT 686          

HSP 4 Score: 72.4034 bits (176), Expect = 1.897e-12
Identity = 49/213 (23.00%), Postives = 95/213 (44.60%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQ------------------EKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            +A  L +K+   G++ +  +Y+ +   L K K +     LY ++K+ G  PD      L+ SF    +++   +V   + + + K  ++ Y SL     +N  + EA+   + +                    K   PD  + S +I C  K +KV+MA  L   ++  G  P  + YN +++ + + GR+ E++ L  ++K  G+ P   T
Sbjct:  301 KAFQLFEKMRRMGMNADIALYDVLIGGLCKHKDLEMALSLYLEIKRSGIPPDRGILGKLLCSFSEESELSRITEVI--IGDIDKKSVMLLYKSLFEGFIRNDLVHEAYSFIQNLMGNYESDGVSEIVKLLKDHNKAILPDSDSLSIVINCLVKANKVDMAVTLLHDIVQNGLIPGPMMYNNIIEGMCKEGRSEESLKLLGEMKDAGVEPSQFT 511          

HSP 5 Score: 72.0182 bits (175), Expect = 2.478e-12
Identity = 49/194 (25.26%), Postives = 88/194 (45.36%), Query Frame = 3
Query:   12 AMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            A+ LL  I + G+ P  +MYN +   + K  +      L  +MK  G  P  FT N +            A+ + +++     +P I     L+  L +NG   +A     ++  +GF   +V  +  I+   K + V+    LF  + A G  P+++ Y++L+  L ++ RT EA  L+ ++  +GL P   T
Sbjct:  458 AVTLLHDIVQNGLIPGPMMYNNIIEGMCKEGRSEESLKLLGEMKDAGVEPSQFTLNCIYGCLAERCDFVGALDLLKKMRFYGFEPWIKHTTFLVKKLCENGRAVDACKYLDDVAGEGFLGHMVASTAAIDGLIKNEGVDRGLELFRDICANGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVAT 651          

HSP 6 Score: 71.2478 bits (173), Expect = 4.227e-12
Identity = 48/192 (25.00%), Postives = 85/192 (44.27%), Query Frame = 3
Query:   15 MDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSI 590
            ++L   I   G  P+ + Y+ +  AL K  +      L+ +M   G  P V TYN +I  + + G+++  +     +      PD+I+Y SLI+ L  +G   EA  R+ EM+ K   P+ +T+  LI+   K      A   F +M  +   P+   Y  L+     S        ++ ++  +G  P S+
Sbjct:  599 LELFRDICANGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENINAGFGIFREMVHKGRFPVSV 790          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP233_ARATH (Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.364e-17
Identity = 52/197 (26.40%), Postives = 107/197 (54.31%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQG--LTPDSIT 593
            EA+ + ++  E GID + V ++ +   L + K +     L+   +++    D+   N+++  +   G V+EA + ++++  S C+PD++SY ++IN L K G L +A   ++ M +   +PDV   + +I+      ++  A  +F ++  +G  PN+VTYN LL  L +  RT +  +L  +++ +G   +P+ +T
Sbjct:  196 EAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGC-DIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKGGSCSPNDVT 391          

HSP 2 Score: 79.7221 bits (195), Expect = 1.188e-14
Identity = 40/176 (22.73%), Postives = 91/176 (51.70%), Query Frame = 3
Query:   57 NTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPD 584
            ++++YN +   LGK+++    H ++ +M +     +  TY +L+  +  A KV+EA+ VFE  +      D+++++ L+  L +  +++ A   F   + + F  D+   + ++  +     V  A R +  ++A  C P++V+Y  +++ L + G+  +A++LY  +      PD
Sbjct:  142 SSMLYNEILDVLGKMRRFEEFHQVFDEMSKRDGFVNEKTYEVLLNRYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCS-RRREFGCDIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPD 316          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP254_ARATH (Pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Arabidopsis thaliana GN=At3g25210 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.700e-17
Identity = 50/178 (28.09%), Postives = 98/178 (55.06%), Query Frame = 3
Query:   48 IDPNTVMYNTVFSALGKLK----QISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQ 569
            ++  T++ +++     KL      +  +  L ++MK +G  PD F  N++I ++ +  +V+EAI+VF+E+     +P+  +Y+ L+  + + G + +    +KEMQ KG  P+   Y  LI       +++ A  +   MLA   SP+++TYN +L  L R GR +EA+++  + K++
Sbjct:  180 LETYTLLLSSLLKRFNKLNVCYVYLHAVRSLTKQMKSNGVIPDTFVLNMIIKAYAKCLEVDEAIRVFKEMALYGSEPNAYTYSYLVKGVCEKGRVGQGLGFYKEMQVKGMVPNGSCYMVLICSLSMERRLDEAVEVVYDMLANSLSPDMLTYNTVLTELCRGGRGSEALEMVEEWKKR 357          

HSP 2 Score: 72.4034 bits (176), Expect = 1.897e-12
Identity = 53/201 (26.37%), Postives = 96/201 (47.76%), Query Frame = 3
Query:   21 LLDKIHEKGIDPNTVMYNTVFS-ALGKLKQISHLHDLYQKM-KQDGPSPDVFTYNILIASF-GRAGKVN------EAIK-VFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            L++++     + +  +YN +     G+    +   D+Y KM + D   PD+ TY +L++S   R  K+N       A++ + ++++++   PD    N +I    K   +DEA   FKEM   G  P+  TYS L++   +  +V      + +M  +G  PN   Y +L+  L    R  EAV++   +    L+PD +T
Sbjct:  130 LIEEVIAGACEMSVPLYNCIIRFCCGRKFLFNRAFDVYNKMLRSDDSKPDLETYTLLLSSLLKRFNKLNVCYVYLHAVRSLTKQMKSNGVIPDTFVLNMIIKAYAKCLEVDEAIRVFKEMALYGSEPNAYTYSYLVKGVCEKGRVGQGLGFYKEMQVKGMVPNGSCYMVLICSLSMERRLDEAVEVVYDMLANSLSPDMLT 330          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP262_ARATH (Pentatricopeptide repeat-containing protein At3g29290 OS=Arabidopsis thaliana GN=EMB2076 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.444e-17
Identity = 47/173 (27.17%), Postives = 90/173 (52.02%), Query Frame = 3
Query:   57 NTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGL 575
            + V+YNT  S  G++  +     +++ MK DG      TY++L++ F R G+   A+ V++E+ N+       +  ++I+   K    D A   F+ M +KG  P++V  +TLI   GK  KV +  +++  + + G  P+  T+N LL  L ++ R  + + L+  ++ + L
Sbjct:  213 DVVLYNTAISLCGRINNVYETERIWRVMKGDGHIGTEITYSLLVSIFVRCGRSELALDVYDEMVNNKISLREDAMYAMISACTKEEKWDLALKIFQSMLKKGMKPNLVACNTLINSLGKAGKVGLVFKVYSVLKSLGHKPDEYTWNALLTALYKANRYEDVLQLFDMIRSENL 385          

HSP 2 Score: 83.1889 bits (204), Expect = 1.075e-15
Identity = 55/227 (24.23%), Postives = 104/227 (45.81%), Query Frame = 3
Query:   12 AMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSN-CKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLD--------------------------------CLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            A+ +   + +KG+ PN V  NT+ ++LGK  ++  +  +Y  +K  G  PD +T+N L+ +  +A +  + +++F+ + + N C  +   YN+ +    K G  ++A     EM+  G +    +Y+ +I    K+ K ++A  +++ M    C PN  TY  L+                                 CL R  + A+  +LY K+++ GL PD  T
Sbjct:  303 ALKIFQSMLKKGMKPNLVACNTLINSLGKAGKVGLVFKVYSVLKSLGHKPDEYTWNALLTALYKANRYEDVLQLFDMIRSENLCCLNEYLYNTAMVSCQKLGYWEKAVKLLYEMEGSGLTVSTSSYNLVISACEKSRKSKVALLVYEHMAQRDCKPNTFTYLSLVRSCIWGSLWDEVEDILKKVEPDVSLYNAAIHGMCLRREFKFAK--ELYVKMREMGLEPDGKT 527          

HSP 3 Score: 70.0922 bits (170), Expect = 9.417e-12
Identity = 48/195 (24.62%), Postives = 93/195 (47.69%), Query Frame = 3
Query:   12 AMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGF-SPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            A+D+ D++    I         + SA  K ++      ++Q M + G  P++   N LI S G+AGKV    KV+  L++   KPD  ++N+L+  L K    ++    F  ++ +     +   Y+T +    K    E A +L  +M   G + +  +YN+++   E+S ++  A+ +Y  + Q+   P++ T
Sbjct:  268 ALDVYDEMVNNKISLREDAMYAMISACTKEEKWDLALKIFQSMLKKGMKPNLVACNTLINSLGKAGKVGLVFKVYSVLKSLGHKPDEYTWNALLTALYKANRYEDVLQLFDMIRSENLCCLNEYLYNTAMVSCQKLGYWEKAVKLLYEMEGSGLTVSTSSYNLVISACEKSRKSKVALLVYEHMAQRDCKPNTFT 462          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP230_ARATH (Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.444e-17
Identity = 47/194 (24.23%), Postives = 95/194 (48.97%), Query Frame = 3
Query:   12 AMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            A+++L  + + G  P++  +N + + L   K    +H ++    + G   D    NILI     +G +  A+++ +E      +P++++++ LI      G  +EA    + M+++   PD +T++ LI    K  +VE    L ++M  +GC PN  TY  +L  L    R  EA ++ +++   G+ P  ++
Sbjct:  151 AIEILFGMPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLEAKEMMSQMISWGMRPSFLS 344          

HSP 2 Score: 78.5666 bits (192), Expect = 2.648e-14
Identity = 53/218 (24.31%), Postives = 96/218 (44.04%), Query Frame = 3
Query:   42 KGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPS--PDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLIN----------------------------CLG-------KNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPD 584
            K   P   +Y  + +  G+ K    + ++ + +K +      + F YN++      AG++N AI++   + +  C P   S+N ++N                            CL        ++GNL+ A     E  ++   P+V+T+S LI  F    K E A +L ++M  E   P+ +T+NIL+  L + GR  E +DL  ++K +G  P+
Sbjct:   89 KDYQPTESLYALMINKFGQAKMYDEIEEVMRTIKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFGMPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPN 306          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP286_ARATH (Pentatricopeptide repeat-containing protein At3g58590 OS=Arabidopsis thaliana GN=At3g58590 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 9.722e-17
Identity = 57/187 (30.48%), Postives = 90/187 (48.13%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQI---SHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKL 560
            E ++L   + +  I P+   + ++ S   KL  +   S +H L  K   D    D F  N+LI  +G+ G +   +KVFEE    N    +I++ +LI+CLG +G   EA  +FKE    GF PD V++ +++        V+    LF KM   G  P +  Y   +D L R+G   EA  L  ++
Sbjct:  528 EVIELFKHMLQSNIRPDKYTFVSILSLCSKLCDLTLGSSIHGLITKT--DFSCADTFVCNVLIDMYGKCGSIRSVMKVFEETREKN----LITWTALISCLGIHGYGQEALEKFKETLSLGFKPDRVSFISILTACRHGGMVKEGMGLFQKMKDYGVEPEMDHYRCAVDLLARNGYLKEAEHLIREM 708          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.722e-17
Identity = 53/183 (28.96%), Postives = 99/183 (54.10%), Query Frame = 3
Query:   48 IDPNTVM-YNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            I+P+ ++  NT+++  G   Q++    L+ KMK    SP++  +N +I+ + + G   EAI +F E+ N + +PD IS  S I+   + G+L++A   ++ +    +  DV   S LI+ F K   VE A  +FD+ L      ++V ++ ++      GR  EA+ LY  +++ G+ P+ +T
Sbjct:  255 IEPDLLISLNTMYAKCG---QVATAKILFDKMK----SPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL----DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVT 426          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP117_ARATH (Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 9.722e-17
Identity = 44/168 (26.19%), Postives = 83/168 (49.40%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPS---PDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILL 503
            +AM LL+++ E G  P    Y        +   +    DL+  M   G +   P   T+ ++I +  +  K  E  ++   + ++ C PD+ +Y  +I  +     +DEA+    EM  KG+ PD+VTY+  +    +  K + A +L+ +M+   C+P++ TYN+L+
Sbjct:  286 KAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLI 453          

HSP 2 Score: 86.2705 bits (212), Expect = 1.270e-16
Identity = 60/192 (31.25%), Postives = 89/192 (46.35%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGID---PNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGL 575
            EA DL D +  KG     P    +  +  AL K  +     +L  +M   G  PDV TY  +I     A KV+EA K  +E+ N    PDI++YN  +  L +N   DEA   +  M E   +P V TY+ LI  F + D  + A   + +M    C  ++ TY  +++ L    R  EA  L  ++  +GL
Sbjct:  321 EAADLFDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGL 512          

HSP 3 Score: 82.8037 bits (203), Expect = 1.404e-15
Identity = 53/181 (29.28%), Postives = 87/181 (48.07%), Query Frame = 3
Query:   48 IDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCK---PDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTP 581
            + P+   +N +F    +++       L ++M + G  P+ FTY   I +F +AG V+EA  +F+ +         P   ++  +I  L KN   +E       M   G  PDV TY  +IE     +KV+ A +  D+M  +G  P+IVTYN  L  L  + +T EA+ LY ++ +    P
Sbjct:  264 VKPDANTFNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAP 444          

HSP 4 Score: 77.411 bits (189), Expect = 5.898e-14
Identity = 49/183 (26.78%), Postives = 88/183 (48.09%), Query Frame = 3
Query:   54 PNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFS---PDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            P    +N +  AL K   +     L ++M+     PD  T+N+L   + R     +A+K+ EE+  +  KP+  +Y + I+   + G +DEA   F  M  KG +   P   T++ +I    K DK E    L  +M++ GC P++ TY  +++ +  + +  EA     ++  +G  PD +T
Sbjct:  232 PEINAFNMLLDALCKCGLVKEGEALLRRMRHR-VKPDANTFNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNKGYPPDIVT 413          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP379_ARATH (Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidopsis thaliana GN=At5g13770 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.270e-16
Identity = 48/172 (27.91%), Postives = 86/172 (50.00%), Query Frame = 3
Query:   21 LLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAE 536
            L D++ +KG D   V Y+ +    GK +++S    L  KMKQ G  P+++ YN LI   GRA  +  A K+++E++ +   PD +SY S+I+   ++  L+     ++E +      D      ++  F KT +++   RL   M  EG   +   Y+  L+ L  +G  ++
Sbjct:  410 LFDEMVKKGFDKCVVAYSNIMDMYGKTRRLSDAVRLMAKMKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKEMKRAKVLPDKVSYTSMISAYNRSKELERCVELYQEFRMNRGKIDRAMAGIMVGVFSKTSRIDELMRLLQDMKVEGTRLDARLYSSALNALRDAGLNSQ 581          

HSP 2 Score: 84.3445 bits (207), Expect = 4.825e-16
Identity = 56/230 (24.35%), Postives = 106/230 (46.09%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKM--KQDGPSPDVFTYNIL---------------------------------IASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            EA+++L+++ +KGI  ++ +Y+ +  A  + +++     L+++   K+    P++    +L                                 +  F +     EA+KV+E      C+   ++Y   IN   +    ++A M F EM +KGF   VV YS +++ +GKT ++  A RL  KM   GC PNI  YN L+D   R+     A  ++ ++K+  + PD ++
Sbjct:  266 EALEVLEEMKDKGIPESSELYSMLIRAFAEAREVVITEKLFKEAGGKKLLKDPEMCLKVVLMYVREGNMETTLEVVAAMRKAELKVTDCILCAIVNGFSKQRGFAEAVKVYEWAMKEECEAGQVTYAIAINAYCRLEKYNKAEMLFDEMVKKGFDKCVVAYSNIMDMYGKTRRLSDAVRLMAKMKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKEMKRAKVLPDKVS 495          

HSP 3 Score: 75.8702 bits (185), Expect = 1.716e-13
Identity = 43/194 (22.16%), Postives = 98/194 (50.52%), Query Frame = 3
Query:    6 AEAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDS 587
            AEA+ + +   ++  +   V Y    +A  +L++ +    L+ +M + G    V  Y+ ++  +G+  ++++A+++  +++   CKP+I  YNSLI+  G+  +L  A   +KEM+     PD V+Y+++I  + ++ ++E    L+ +        +     I++    ++ R  E + L   +K +G   D+
Sbjct:  370 AEAVKVYEWAMKEECEAGQVTYAIAINAYCRLEKYNKAEMLFDEMVKKGFDKCVVAYSNIMDMYGKTRRLSDAVRLMAKMKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKEMKRAKVLPDKVSYTSMISAYNRSKELERCVELYQEFRMNRGKIDRAMAGIMVGVFSKTSRIDELMRLLQDMKVEGTRLDA 563          
The following BLAST results are available for this feature:
BLAST of CX288860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 260
Match NameE-valueIdentityDescription
PP393_ARATH4.364e-1727.78Pentatricopeptide repeat-containing protein At5g18... [more]
PP368_ARATH4.364e-1726.94Putative pentatricopeptide repeat-containing prote... [more]
PP233_ARATH4.364e-1726.40Putative pentatricopeptide repeat-containing prote... [more]
PP254_ARATH5.700e-1728.09Pentatricopeptide repeat-containing protein At3g25... [more]
PP262_ARATH7.444e-1727.17Pentatricopeptide repeat-containing protein At3g29... [more]
PP230_ARATH7.444e-1724.23Pentatricopeptide repeat-containing protein At3g14... [more]
PP286_ARATH9.722e-1730.48Pentatricopeptide repeat-containing protein At3g58... [more]
PP224_ARATH9.722e-1728.96Pentatricopeptide repeat-containing protein At3g12... [more]
PP117_ARATH9.722e-1726.19Pentatricopeptide repeat-containing protein At1g73... [more]
PP379_ARATH1.270e-1627.91Pentatricopeptide repeat-containing protein At5g13... [more]

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Properties
Property NameValue
Genbank descriptionC02006C04SK IF1 Citrus clementina cDNA clone C02006C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288860 ID=CX288860; Name=CX288860; organism=Citrus clementina; type=EST; length=595bp
AGACAGCAGAGGCTATGGACCTGCTTGATAAGATTCATGAAAAAGGAATA
GACCCCAATACAGTCATGTATAACACAGTATTTTCAGCTCTTGGCAAGTT
GAAGCAAATATCACATCTGCATGATCTTTACCAAAAAATGAAGCAAGATG
GCCCTTCTCCAGATGTATTTACCTACAATATCCTGATTGCAAGCTTTGGT
AGGGCAGGAAAGGTTAATGAGGCCATTAAAGTTTTTGAAGAACTAGAGAA
TAGCAATTGTAAACCTGATATTATCTCATATAATTCATTGATCAATTGTC
TTGGGAAGAATGGTAATCTTGATGAAGCTCACATGAGGTTTAAAGAGATG
CAGGAGAAAGGGTTCAGTCCTGATGTTGTTACATATAGTACGCTAATTGA
ATGCTTTGGCAAGACGGACAAAGTTGAGATGGCATGTAGATTGTTTGACA
AGATGCTTGCTGAAGGATGCTCCCCCAACATTGTGACATACAATATCTTA
CTTGACTGTCTTGAAAGAAGTGGGAGAACTGCTGAAGCAGTGGATCTTTA
TGCAAAACTTAAGCAACAGGGGTTAACACCTGATTCAATCACATA
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