CX288860
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 7.704e-14 Identity = 45/171 (26.32%), Postives = 84/171 (49.12%), Query Frame = 3 Query: 48 IDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKL 560 ++P+T Y + A+ + + ++ + + G ++ N L+ + G V A KVF+++ D++++NS+IN +NG +EA + EM KG PD T +L+ K + + R+ M+ G + N+ + N+LLD R GR EA L+ ++ Sbjct: 117 VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEK----DLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 283
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP155_ARATH (Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana GN=At2g15980 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.704e-14 Identity = 47/171 (27.49%), Postives = 95/171 (55.56%), Query Frame = 3 Query: 48 IDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQD-GPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLD--CLERSG-RTAEAVDL 548 I PN +N++ + + + + ++++M+++ G SP+V++YN+L+ ++ G ++EA KV+EE++ DI++YN++I L N + +A F++M KG +TY L+ + K V+ ++ +M +G + +T L++ C +R G R EA D+ Sbjct: 241 IKPNATTFNSMMVSFYREGETEMVERIWREMEEEVGCSPNVYSYNVLMEAYCARGLMSEAEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGLKGIECTCLTYEHLVNGYCKAGDVDSGLVVYREMKRKGFEADGLTIEALVEGLCDDRDGQRVVEAADI 411 HSP 2 Score: 75.485 bits (184), Expect = 2.241e-13 Identity = 50/208 (24.04%), Postives = 101/208 (48.56%), Query Frame = 3 Query: 12 AMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKM------------KQDGP-SPDVFTYNILIASFGRAGKVNEAIKVFEELENS-NCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 A+ ++ K+ +GI+ N + + + + + S+ + +Y+++ K G P+ T+N ++ SF R G+ +++ E+E C P++ SYN L+ G + EA ++EM+ +G D+V Y+T+I +V A LF M +G +TY L++ ++G + +Y ++K++G D +T Sbjct: 181 AVMVMRKLRSRGINAQISTCNALITEVSRRRGASNGYKMYREVFGLDDVSVDEAKKMIGKIKPNATTFNSMMVSFYREGETEMVERIWREMEEEVGCSPNVYSYNVLMEAYCARGLMSEAEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGLKGIECTCLTYEHLVNGYCKAGDVDSGLVVYREMKRKGFEADGLT 388 HSP 3 Score: 67.0106 bits (162), Expect = 7.972e-11 Identity = 48/189 (25.40%), Postives = 88/189 (46.56%), Query Frame = 3 Query: 39 EKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIE--CFGKTDK--VEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 E G PN YN + A +S ++++MK G D+ YN +I +V +A ++F ++ + ++Y L+N K G++D + ++EM+ KGF D +T L+E C + + VE A + D + P+ Y +L+ L G+ A+++ A++ +G P T Sbjct: 274 EVGCSPNVYSYNVLMEAYCARGLMSEAEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGLKGIECTCLTYEHLVNGYCKAGDVDSGLVVYREMKRKGFEADGLTIEALVEGLCDDRDGQRVVEAADIVKDAVREAMFYPSRNCYELLVKRLCEDGKMDRALNIQAEMVGKGFKPSQET 462
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR14_ARATH (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.006e-13 Identity = 48/191 (25.13%), Postives = 88/191 (46.07%), Query Frame = 3 Query: 15 MDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKL-KQQGLTPD 584 +D K+ E +D N VM+ T+ S K ++ DL+++M ++ P+ T ++ S G + V + + + D +++ S I+ + GN+ A F M E+ +V+++S++I FG E A F KM ++ PN VT+ LL SG E + + + G+ P+ Sbjct: 262 LDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPER----NVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPE 448
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP162_ARATH (Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidopsis thaliana GN=At2g18520 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13 Identity = 49/187 (26.20%), Postives = 92/187 (49.20%), Query Frame = 3 Query: 12 AMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQ--DGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQ 566 AM + +++ + G V +N + +A + L+ + Q + +PD +Y +LI S+ +GK +A+++ ++E + II++ +++ L KNG +DEA + EM KG D Y+ + K + E L ++M + G P+ V+YN L+ G +EA +Y L+Q Sbjct: 121 AMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAESLWIEMVNKGCDLDNTVYNVRLMNAAK-ESPERVKELMEEMSSVGLKPDTVSYNYLMTAYCVKGMMSEAKKVYEGLEQ 306
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR70_ARATH (Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13 Identity = 57/192 (29.69%), Postives = 90/192 (46.88%), Query Frame = 3 Query: 9 EAMDLLDK-IHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFS---PDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQ 569 EA+ L + I+E I PN V V SA + + ++ + S DVF N L+ +G+ G + EA VF+ K + ++NS+INC +G +EA F+EM + + PD +T+ L+ V FD M G P I Y L+D L R+GR EA+++ + +K + Sbjct: 242 EAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMAS----KKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTMKMK 429
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP436_ARATH (Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13 Identity = 49/198 (24.75%), Postives = 94/198 (47.47%), Query Frame = 3 Query: 9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISH---LHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 E++D ++++ G+ + + ++ A L +H L K + D F + LI + + G+V A KVF +L D++ +N++I+ N DEA K+M+ G PDV+T++ LI F E + + M +G P++V++ ++ L + + +A D + ++ GL P+S T Sbjct: 100 ESLDFFREMYKDGLKLDAFIVPSLLKASRNLLDREFGKMIHCLVLKFSYES---DAFIVSSLIDMYSKFGEVGNARKVFSDLGEQ----DLVVFNAMISGYANNSQADEALNLVKDMKLLGIKPDVITWNALISGFSHMRNEEKVSEILELMCLDGYKPDVVSWTSIISGLVHNFQNEKAFDAFKQMLTHGLYPNSAT 290
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13 Identity = 40/180 (22.22%), Postives = 91/180 (50.56%), Query Frame = 3 Query: 51 DPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSI 590 D V++N + +L L+ KM+Q V ++N +I+ + G +A++VF E++ + +P+ ++ S++ + + G+L+ ++ G D V S LI+ + K +E A +F+++ E N++T++ +++ G+ +A+D + K++Q G+ P + Sbjct: 205 DGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRS----VVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRE----NVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDV 376
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP371_ARATH (Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.823e-13 Identity = 52/185 (28.11%), Postives = 87/185 (47.03%), Query Frame = 3 Query: 39 EKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKM-LAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSI 590 +K + PN + +V A L ++ L +++G +++ N I + + G ++ A ++FEEL N ++ S+NS+I L +G DEA F +M +G PD VT+ L+ V LF M SP + Y ++D L R G+ EA DL +K + PD++ Sbjct: 208 DKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQR---NLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDL---IKTMPMKPDAV 386 HSP 2 Score: 67.0106 bits (162), Expect = 7.972e-11 Identity = 42/177 (23.73%), Postives = 92/177 (51.98%), Query Frame = 3 Query: 66 MYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELE-NSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 ++N + + + + +L+ M P +V ++ +I+ F + G +EA+K+F +E + + KP+ I+ S++ G L+ +E GF ++ + IE + K +++A RLF+++ G N+ ++N ++ L G+ EA+ L+A++ ++G PD++T Sbjct: 150 VWNAMITGYQRRGDMKAAMELFDSM----PRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEEL---GNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVT 319
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR46_ARATH (Putative pentatricopeptide repeat-containing protein At1g16830 OS=Arabidopsis thaliana GN=At1g16830 PE=3 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 4.993e-13 Identity = 47/196 (23.98%), Postives = 96/196 (48.98%), Query Frame = 3 Query: 6 AEAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 +EA ++ + GI + +++ + S + + DL+ KM Q G SP++ TY LI F G V+EA V ++++ PDI+ N +I+ + G +EA F ++++ PD T+++++ + K ++ R+ + G ++VT N+L +C + G + A+ + + + + D T Sbjct: 229 SEAFQVVGLMICSGISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRKLVPDQYTFASILSSLCLSGKFDLVPRITHGI---GTDFDLVTGNLLSNCFSKIGYNSYALKVLSIMSYKDFALDCYT 421 HSP 2 Score: 69.3218 bits (168), Expect = 1.606e-11 Identity = 40/169 (23.67%), Postives = 83/169 (49.11%), Query Frame = 3 Query: 21 LLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGR 527 +L ++ +G PN + + + +S + M G S V +++L++ F R+G+ +A+ +F ++ C P++++Y SLI G +DEA ++Q +G +PD+V + +I + + + E A ++F + P+ T+ +L L SG+ Sbjct: 199 VLKRMIGEGFYPNRERFGQILRLCCRTGCVSEAFQVVGLMICSGISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRKLVPDQYTFASILSSLCLSGK 367 HSP 3 Score: 67.0106 bits (162), Expect = 7.972e-11 Identity = 43/154 (27.92%), Postives = 82/154 (53.25%), Query Frame = 3 Query: 132 QKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 ++M +G P+ + ++ R G V+EA +V + S + ++ L++ ++G +A F +M + G SP++VTY++LI+ F V+ A + K+ +EG +P+IV N+++ R GR EA ++ L+++ L PD T Sbjct: 201 KRMIGEGFYPNRERFGQILRLCCRTGCVSEAFQVVGLMICSGISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRKLVPDQYT 354
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP374_ARATH (Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana GN=At5g10690 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.993e-13 Identity = 49/169 (28.99%), Postives = 87/169 (51.48%), Query Frame = 3 Query: 93 GKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKG-------FSPDVVTYSTLIECFG-KTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAK-LKQQG 572 G L++ + L Y + D +P V YN+L+ + + AI + +E+ +PD ++YN+LI+ K G+LD A F +M+EK PDVVTY+TL++ FG TD + + + L E + + ++D + + G T+ A+ ++ + LK+ G Sbjct: 166 GDLRRANGLLARYDILLLDHGTPSVLIYNLLMKGYVNSESPQAAINLLDEMLRLRLEPDRLTYNTLIHACIKCGDLDAAMKFFNDMKEKAEEYYDDFLQPDVVTYTTLVKGFGDATDLLSLQEIFLEMKLCENVFIDRTAFTAVVDAMLKCGSTSGALCVFGEILKRSG 334 The following BLAST results are available for this feature:
BLAST of CX288860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 260
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288860 ID=CX288860; Name=CX288860; organism=Citrus clementina; type=EST; length=595bpback to top |