CX288860
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR71_ARATH (Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 6.521e-13 Identity = 53/197 (26.90%), Postives = 95/197 (48.22%), Query Frame = 3 Query: 6 AEAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQ--KMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSI 590 +EAM+L ++ +GI + V TV +ALG SHL D+ + + + +V N I + + G V++A +VFE+ K ++++N++I +G A F ++++ G PD V+Y + VE +F+ M +G N+ Y ++D L R+GR EA D+ + + PD + Sbjct: 192 SEAMELYKRMETEGIRRSEV---TVVAALGAC---SHLGDVKEGENIFHGYSNDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTG---KKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACKGVERNMKHYGCVVDLLSRAGRLREAHDIICSM---SMIPDPV 376
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR13_ARATH (Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.521e-13 Identity = 59/186 (31.72%), Postives = 87/186 (46.77%), Query Frame = 3 Query: 9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQIS-----HLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEAVDL 548 EA+ ++ G+ P+ V +A L +S H + L Q K + V N LI + R G V A +VF +E K ++S+NS+I NGN E+ + F++MQEKGF PD VT++ + VE R F M + SP I Y L+D R+GR +A+ L Sbjct: 189 EALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNN-----VRVSNSLIDLYCRCGCVEFARQVFYNME----KRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKL 365
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP356_ARATH (Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN=At4g38150 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.521e-13 Identity = 44/163 (26.99%), Postives = 78/163 (47.85%), Query Frame = 3 Query: 18 DLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLD 506 ++ K+ E G+ PN V + L K + L+ M+ G P+V Y ++ +F +A K+ +A ++F +++N+ P+ SY L+ L LD+A EM E G SP+V T+ L++ + VE A D + +G + N+ +D Sbjct: 120 EIFKKMKEGGLIPNAV---AMLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQGLYNCNMLDDAVAFCSEMLESGHSPNVPTFVELVDALCRVKGVEQAQSAIDTLNQKGFAVNVKAVKEFMD 279 HSP 2 Score: 69.3218 bits (168), Expect = 1.606e-11 Identity = 38/150 (25.33%), Postives = 76/150 (50.67%), Query Frame = 3 Query: 123 DLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQG 572 ++++KMK+ G P+ ++ + G V EA+K+F + + P+++ Y +++ K +++A F++MQ G +P+ +Y L++ + ++ A +ML G SPN+ T+ L+D L R +A L Q+G Sbjct: 120 EIFKKMKEGGLIPNAVA---MLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQGLYNCNMLDDAVAFCSEMLESGHSPNVPTFVELVDALCRVKGVEQAQSAIDTLNQKG 266
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP336_ARATH (Pentatricopeptide repeat-containing protein At4g22765 OS=Arabidopsis thaliana GN=PCMP-E6 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.521e-13 Identity = 53/189 (28.04%), Postives = 90/189 (47.62%), Query Frame = 3 Query: 9 EAMDLLDKIHEKG--IDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQ 569 +A+ L ++ E+ I P+ + ++V SA +L S + + + G D LI + + G +A K+F L K D +SY+++I G NG EA+ F M EK P+VVT++ L+ + + V+ + F+ M P+ Y I++D L R+GR EA +L + Q Sbjct: 312 DALKLFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSNLN----KKDTVSYSAMIMGCGINGMATEANSLFTAMIEKKIPPNVVTFTGLLSAYSHSGLVQEGYKCFNSMKDHNLEPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQ 496
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP107_ARATH (Pentatricopeptide repeat-containing protein At1g66345, mitochondrial OS=Arabidopsis thaliana GN=At1g66345 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.521e-13 Identity = 48/188 (25.53%), Postives = 88/188 (46.81%), Query Frame = 3 Query: 12 AMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGL 575 A + D++ ++G N+ +Y + + L +M++ G SP T+N LI F R G + ++ E + P ++N ++ + K N++ A+ + +KGF PD TYS LI F + + ++ A +LF +M SP + L+ L G+ EA + Y K+ ++ L Sbjct: 323 ARKVFDEMLQRGFSANSFVYTVFVRVCCEKGDVKEAERLLSEMEESGVSPYDETFNCLIGGFARFGWEEKGLEYCEVMVTRGLMPSCSAFNEMVKSVSKIENVNRANEILTKSIDKGFVPDEHTYSHLIRGFIEGNDIDQALKLFYEMEYRKMSPGFEVFRSLIVGLCTCGK-VEAGEKYLKIMKKRL 509
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR69_ARATH (Pentatricopeptide repeat-containing protein At1g32415, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 8.517e-13 Identity = 55/197 (27.92%), Postives = 92/197 (46.70%), Query Frame = 3 Query: 6 AEAMDLLDKIHEKGIDPNTVMYNTVFSALG---KLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKML-AEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPD 584 AEA LL + G+ P Y+ + S+ G L Q H+H + K PD+ N L++ + + G + +A ++F ++ + D +S+NS+I L +G D+A FKEM + G P+ VT+ ++ + + LF M P I Y ++D L R+G+ EA + + L TPD Sbjct: 448 AEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACY-DPDLILQNSLVSMYAKCGAIEDAYEIFAKM----VQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLLGRAGKLKEAEEFISALP---FTPD 636
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP207_ARATH (Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 8.517e-13 Identity = 46/190 (24.21%), Postives = 91/190 (47.89%), Query Frame = 3 Query: 15 MDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQ-GLTP 581 M+ L+K+H K + V +N++ S +Q L+ +M + G +PD FTY ++ + ++ ++ + D+ ++L++ K G+L ++ + F EK D VT++ +I + K E A +LF++M+ E PN VT+ +L G + ++ + +K+ GL P Sbjct: 553 MEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMF----EKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDP 738
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR33_ARATH (Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidopsis thaliana GN=At1g11630 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12 Identity = 52/180 (28.89%), Postives = 80/180 (44.44%), Query Frame = 3 Query: 54 PNTVM-YNTVFSALGKLKQISHLHDLYQKM-KQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDS 587 P TV N + A K + +Y +M K G PD+ TYN +I +G + + + E+E KP S+ +I+ K DE + M E G V TY+ +I+C K K A L D +++ PN VTY++L+ EA++L+ + G PDS Sbjct: 143 PRTVKSLNALLFACLMAKDYKEANRVYLEMPKMYGIEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMIDGFYKEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFEVMVCNGYKPDS 322 HSP 2 Score: 70.8626 bits (172), Expect = 5.521e-12 Identity = 45/179 (25.14%), Postives = 79/179 (44.13%), Query Frame = 3 Query: 45 GIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTP 581 GI+P+ YN + L + S + + +M++ P ++ ++I F + K +E KV ++ + +YN +I CL K EA + P+ VTYS LI F + ++ A LF+ M+ G P+ Y L+ CL + G A+ L + ++ P Sbjct: 177 GIEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMIDGFYKEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETALILCRESMEKNWVP 355 HSP 3 Score: 70.4774 bits (171), Expect = 7.210e-12 Identity = 47/189 (24.87%), Postives = 86/189 (45.50%), Query Frame = 3 Query: 3 TAEAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQ 569 T+ + ++ ++ K I P + + K ++ + + + M + G V TYNI+I + K EA + + + + +P+ ++Y+ LI+ NLDEA F+ M G+ PD Y TLI C K E A L + + + P+ L++ L + EA +L A +K++ Sbjct: 198 TSSSYSIVAEMERKWIKPTAASFGLMIDGFYKEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETALILCRESMEKNWVPSFSVMKWLVNGLASRSKVDEAKELIAVVKEK 386
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP439_ARATH (Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidopsis thaliana GN=At5g61370 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12 Identity = 46/188 (24.47%), Postives = 87/188 (46.28%), Query Frame = 3 Query: 9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQ-------ISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLY 551 EA ++ + GI P+ +N++ + L + + ++ +M+ P +YNIL++ GR +V E+ ++ E+++ S C PD SY ++ L G + + EM E+GF P+ Y LI ++V A +LF+KM Y++L+ L + G + +L+ Sbjct: 226 EARRVIQDMKSAGITPDLFCFNSLLTCLCERNVNRNPSGLVPEALNIMLEMRSYKIQPTSMSYNILLSCLGRTRRVRESCQILEQMKRSGCDPDTGSYYFVVRVLYLTGRFGKGNQIVDEMIERGFRPERKFYYDLIGVLCGVERVNFALQLFEKMKRSSVGGYGQVYDLLIPKLCKGGNFEKGRELW 413 HSP 2 Score: 71.633 bits (174), Expect = 3.237e-12 Identity = 36/148 (24.32%), Postives = 76/148 (51.35%), Query Frame = 3 Query: 162 DVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCL-------GKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPD 584 ++ Y L+ + V EA +V ++++++ PD+ +NSL+ CL +G + EA EM+ P ++Y+ L+ C G+T +V +C++ ++M GC P+ +Y ++ L +GR + + ++ ++G P+ Sbjct: 207 ELSVYRSLLFGWSVQRNVKEARRVIQDMKSAGITPDLFCFNSLLTCLCERNVNRNPSGLVPEALNIMLEMRSYKIQPTSMSYNILLSCLGRTRRVRESCQILEQMKRSGCDPDTGSYYFVVRVLYLTGRFGKGNQIVDEMIERGFRPE 354 HSP 3 Score: 69.3218 bits (168), Expect = 1.606e-11 Identity = 45/188 (23.94%), Postives = 86/188 (45.74%), Query Frame = 3 Query: 36 HEKGIDPNTV-MYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASF-------GRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGL 575 H+ I N + +Y ++ + + + Q MK G +PD+F +N L+ +G V EA+ + E+ + +P +SYN L++CLG+ + E+ ++M+ G PD +Y ++ T + ++ D+M+ G P Y L+ L R A+ L+ K+K+ + Sbjct: 199 HKDVISGNELSVYRSLLFGWSVQRNVKEARRVIQDMKSAGITPDLFCFNSLLTCLCERNVNRNPSGLVPEALNIMLEMRSYKIQPTSMSYNILLSCLGRTRRVRESCQILEQMKRSGCDPDTGSYYFVVRVLYLTGRFGKGNQIVDEMIERGFRPERKFYYDLIGVLCGVERVNFALQLFEKMKRSSV 386
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP335_ARATH (Pentatricopeptide repeat-containing protein At4g21880, mitochondrial OS=Arabidopsis thaliana GN=At4g21880 PE=2 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12 Identity = 40/175 (22.86%), Postives = 90/175 (51.43%), Query Frame = 3 Query: 42 KGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQ 566 K + PN+ + + ++K +++ +K +P+ YN ++A + R KVN A+KV +E++ ++ KPD ++++ LIN G+ + + +KEM++ G + Y +L++ + + E A ++ + N + ++L+ L +G EA+ +Y ++K+ Sbjct: 457 KSVKPNSETFRKSINLCIRIKDFEGAYNMLGNLKNFNLAPNSSMYNSIMAGYFREKKVNSALKVLKEMKEADVKPDSVTFSYLINYCGEEATIAK---YYKEMKQAGVEVNKHVYMSLVKAYASCGQFEKAKQVLMDLEVPAKDHNELK-SVLISALASNGNITEALSIYEEMKK 627 The following BLAST results are available for this feature:
BLAST of CX288860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 260
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288860 ID=CX288860; Name=CX288860; organism=Citrus clementina; type=EST; length=595bpback to top |