CX288860

Overview
NameCX288860
Unique NameCX288860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.237e-12
Identity = 50/196 (25.51%), Postives = 87/196 (44.39%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKML-AEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            EA++L   +   G  PN+     + S    L  +SH   ++    + G    V   N LI  + +AG +  A + F+ +    C+ D +S+ S+I  L ++G+ +EA   F+ M  +G  PD +TY  +         V    + FD M   +   P +  Y  ++D   R+G   EA +   K+    + PD +T
Sbjct:  396 EAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIR---CERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMP---IEPDVVT 585          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR64_ARATH (Pentatricopeptide repeat-containing protein At1g30610, chloroplastic OS=Arabidopsis thaliana GN=EMB2279 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12
Identity = 42/187 (22.46%), Postives = 88/187 (47.06%), Query Frame = 3
Query:   63 VMYNTVFSALGKLKQ-ISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCK---------------PDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGL 575
            ++Y T  + LGK ++ +  L+  +  + Q    PD+  Y  +  + G+AG + E   V + + +   K               PD++ YN+++N   +    + A    ++++++G  P  VTY  ++E     +K  +    F KM  +   PN + Y +L++ L + G++ EAV     ++ +G+
Sbjct:  508 IIYTTALNVLGKSRRPVEALNVFHAMLLQISSYPDMVAYRSIAVTLGQAGHIKELFYVIDTMRSPPKKKFKPTTLEKWDPRLEPDVVVYNAVLNACVQRKQWEGAFWVLQQLKQRGQKPSPVTYGLIMEVMLACEKYNLVHEFFRKM-QKSSIPNALAYRVLVNTLWKEGKSDEAVHTVEDMESRGI 693          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR43_ARATH (Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana GN=PCMP-A4 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12
Identity = 47/187 (25.13%), Postives = 92/187 (49.20%), Query Frame = 3
Query:   36 HEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEEL-ENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            +E G   N V +N + S   ++  +S    L+  M    P  +V ++N LIA +   G+   AI+ FE++ +  + KPD ++  S+++  G   +L+        +++     +   Y +LI  + +   +  A R+FD+M       ++V+YN L      +G   E ++L +K+K +G+ PD +T
Sbjct:  323 NELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTM----PKRNVVSWNSLIAGYAHNGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELGDCIVDYIRKNQIKLNDSGYRSLIFMYARGGNLWEAKRVFDEMKER----DVVSYNTLFTAFAANGDGVETLNLLSKMKDEGIEPDRVT 501          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR11_ARATH (Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana GN=At1g05600 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12
Identity = 54/213 (25.35%), Postives = 95/213 (44.60%), Query Frame = 3
Query:   57 NTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNL------------------------------------DEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRL----FDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGL 575
            N  +Y T+   LGK  ++  +  + ++MK+D        +  +I +F RAG++ +AI +F+ L   NC    +S+++L+  + K   L                                    D A   F+EM  +G  PD  +Y  L++ F    K+E A  L    F ++  +G   +IV Y ILLD L  +G   +A+++  K+ ++GL
Sbjct:   45 NGSVYATMIDILGKSNRVLEMKYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLLQEMVKESELEAACHIFRKYCYGWEVNSRITALNLLMKVLCQVNRSDLASQVFQEMNYQGCYPDRDSYRILMKGFCLEGKLEEATHLLYSMFWRISQKGSGEDIVVYRILLDALCDAGEVDDAIEILGKILRKGL 257          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP435_ARATH (Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12
Identity = 55/198 (27.78%), Postives = 93/198 (46.97%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSA---LGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKM-LAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSI 590
            +A++L  ++  + +  N      V SA   LG L+    +H   +  + +  +   F  N LI  + R G +NEA +VF  + +     D+ISYN++I+ L  +G   EA   F++M  +GF P+ VT   L+        +++   +F+ M       P I  Y  ++D L R GR  EA   Y  ++   + PD I
Sbjct:  238 KALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSN---FVGNALINMYSRCGDINEARRVFRVMRDK----DVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEA---YRFIENIPIEPDHI 425          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP405_ARATH (Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12
Identity = 41/179 (22.91%), Postives = 86/179 (48.04%), Query Frame = 3
Query:   15 MDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLY 551
            +DL  ++       +T  ++ + +   + + +S    L+++M+++   P++ T N L+ ++     + +A+ +   L  +     + +   L++   K G L+ AH  F  +QEK  S DVV +  LI  +G       A ++F +M+  G +PN +T+   L+    SG   E + L+
Sbjct:  370 VDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLF 548          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12
Identity = 47/185 (25.41%), Postives = 90/185 (48.65%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEAVDLYAKL 560
            +A+DL + +  +G+  N  +  +V S+   L  +      Y+ + +   + ++     L+  F R G + +AI VFE L  +    D +S++S+I  L  +G+  +A   F +M   GF P  VT++ ++        VE    +++ M  + G  P +  Y  ++D L R+G+ AEA +   K+
Sbjct:  232 KAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPET----DSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKM 412          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12
Identity = 54/228 (23.68%), Postives = 101/228 (44.30%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGF---------------------------------SPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            +A++LL  +    + PN   Y++V  +   +  +  LH    K   +G   DVF  + LI  F + G+  +A+ VF+E+       D I +NS+I    +N   D A   FK M+  GF                                   D++  + L++ + K   +E A R+F++M       +++T++ ++  L ++G + EA+ L+ ++K  G  P+ IT
Sbjct:  145 KALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIK---EGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTG----DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKER----DVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYIT 361          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 59/212 (27.83%), Postives = 90/212 (42.45%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISH----------------------LHDLYQKMKQDGPSPDVFT---------YNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEK-GFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDL 548
            EA++L  ++   G+ PN V   ++  A G +  + H                      L D+Y K  +   S  VF          +N L+  F   GK  E + +FE L  +  KPD IS+ SL++  G+ G  DE    FK M E+ G  P +  YS ++   G+  K++ A  L  +M  E   P+   +  LL+    S R    VDL
Sbjct:  371 EALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFE---PDSCVWGALLN----SCRLQNNVDL 575          

HSP 2 Score: 70.0922 bits (170), Expect = 9.417e-12
Identity = 35/169 (20.71%), Postives = 86/169 (50.89%), Query Frame = 3
Query:   45 GIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLY 551
            G+D +  +  ++F    +  ++     ++ +M       DV T + L+ ++ R G + E +++  E+E+S  + +I+S+N +++   ++G   EA + F+++   GF PD VT S+++   G ++ + M   +   ++ +G   +    + ++D   +SG     + L+
Sbjct:  146 GLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDK----DVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLF 310          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR29_ARATH (Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana GN=GRP23 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 46/146 (31.51%), Postives = 78/146 (53.42%), Query Frame = 3
Query:  159 PDVFTYNILIASFGRAGKVNEAIKVFEEL-ENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKE-MQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSI 590
            P VFT N +IA+  RA + +E+I +F+   + SN  P+++SYN +IN     GN+DEA   ++  +    F+P  VTY  L +   +  ++  A  L  +ML++G + +   YN L+      G   +AV+ + +LK +    D I
Sbjct:  178 PTVFTCNAIIAAMYRAKRYSESISLFQYFFKQSNIVPNVVSYNQIINAHCDEGNVDEALEVYRHILANAPFAPSSVTYRHLTKGLVQAGRIGDAASLLREMLSKGQAADSTVYNNLIRGYLDLGDFDKAVEFFDELKSKCTVYDGI 323          
The following BLAST results are available for this feature:
BLAST of CX288860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 260
Match NameE-valueIdentityDescription
PP168_ARATH3.237e-1225.51Pentatricopeptide repeat-containing protein At2g22... [more]
PPR64_ARATH4.227e-1222.46Pentatricopeptide repeat-containing protein At1g30... [more]
PPR43_ARATH4.227e-1225.13Pentatricopeptide repeat-containing protein At1g14... [more]
PPR11_ARATH4.227e-1225.35Pentatricopeptide repeat-containing protein At1g05... [more]
PP435_ARATH4.227e-1227.78Putative pentatricopeptide repeat-containing prote... [more]
PP405_ARATH4.227e-1222.91Pentatricopeptide repeat-containing protein At5g39... [more]
PP367_ARATH4.227e-1225.41Pentatricopeptide repeat-containing protein At5g06... [more]
PP147_ARATH4.227e-1223.68Pentatricopeptide repeat-containing protein At2g03... [more]
PPR53_ARATH5.521e-1227.83Pentatricopeptide repeat-containing protein At1g20... [more]
PPR29_ARATH5.521e-1231.51Pentatricopeptide repeat-containing protein At1g10... [more]

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Properties
Property NameValue
Genbank descriptionC02006C04SK IF1 Citrus clementina cDNA clone C02006C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288860 ID=CX288860; Name=CX288860; organism=Citrus clementina; type=EST; length=595bp
AGACAGCAGAGGCTATGGACCTGCTTGATAAGATTCATGAAAAAGGAATA
GACCCCAATACAGTCATGTATAACACAGTATTTTCAGCTCTTGGCAAGTT
GAAGCAAATATCACATCTGCATGATCTTTACCAAAAAATGAAGCAAGATG
GCCCTTCTCCAGATGTATTTACCTACAATATCCTGATTGCAAGCTTTGGT
AGGGCAGGAAAGGTTAATGAGGCCATTAAAGTTTTTGAAGAACTAGAGAA
TAGCAATTGTAAACCTGATATTATCTCATATAATTCATTGATCAATTGTC
TTGGGAAGAATGGTAATCTTGATGAAGCTCACATGAGGTTTAAAGAGATG
CAGGAGAAAGGGTTCAGTCCTGATGTTGTTACATATAGTACGCTAATTGA
ATGCTTTGGCAAGACGGACAAAGTTGAGATGGCATGTAGATTGTTTGACA
AGATGCTTGCTGAAGGATGCTCCCCCAACATTGTGACATACAATATCTTA
CTTGACTGTCTTGAAAGAAGTGGGAGAACTGCTGAAGCAGTGGATCTTTA
TGCAAAACTTAAGCAACAGGGGTTAACACCTGATTCAATCACATA
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