CX288860
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.237e-12 Identity = 50/196 (25.51%), Postives = 87/196 (44.39%), Query Frame = 3 Query: 9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKML-AEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 EA++L + G PN+ + S L +SH ++ + G V N LI + +AG + A + F+ + C+ D +S+ S+I L ++G+ +EA F+ M +G PD +TY + V + FD M + P + Y ++D R+G EA + K+ + PD +T Sbjct: 396 EAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIR---CERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMP---IEPDVVT 585
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR64_ARATH (Pentatricopeptide repeat-containing protein At1g30610, chloroplastic OS=Arabidopsis thaliana GN=EMB2279 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12 Identity = 42/187 (22.46%), Postives = 88/187 (47.06%), Query Frame = 3 Query: 63 VMYNTVFSALGKLKQ-ISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCK---------------PDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGL 575 ++Y T + LGK ++ + L+ + + Q PD+ Y + + G+AG + E V + + + K PD++ YN+++N + + A ++++++G P VTY ++E +K + F KM + PN + Y +L++ L + G++ EAV ++ +G+ Sbjct: 508 IIYTTALNVLGKSRRPVEALNVFHAMLLQISSYPDMVAYRSIAVTLGQAGHIKELFYVIDTMRSPPKKKFKPTTLEKWDPRLEPDVVVYNAVLNACVQRKQWEGAFWVLQQLKQRGQKPSPVTYGLIMEVMLACEKYNLVHEFFRKM-QKSSIPNALAYRVLVNTLWKEGKSDEAVHTVEDMESRGI 693
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR43_ARATH (Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana GN=PCMP-A4 PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12 Identity = 47/187 (25.13%), Postives = 92/187 (49.20%), Query Frame = 3 Query: 36 HEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEEL-ENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 +E G N V +N + S ++ +S L+ M P +V ++N LIA + G+ AI+ FE++ + + KPD ++ S+++ G +L+ +++ + Y +LI + + + A R+FD+M ++V+YN L +G E ++L +K+K +G+ PD +T Sbjct: 323 NELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTM----PKRNVVSWNSLIAGYAHNGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELGDCIVDYIRKNQIKLNDSGYRSLIFMYARGGNLWEAKRVFDEMKER----DVVSYNTLFTAFAANGDGVETLNLLSKMKDEGIEPDRVT 501
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR11_ARATH (Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana GN=At1g05600 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12 Identity = 54/213 (25.35%), Postives = 95/213 (44.60%), Query Frame = 3 Query: 57 NTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNL------------------------------------DEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRL----FDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGL 575 N +Y T+ LGK ++ + + ++MK+D + +I +F RAG++ +AI +F+ L NC +S+++L+ + K L D A F+EM +G PD +Y L++ F K+E A L F ++ +G +IV Y ILLD L +G +A+++ K+ ++GL Sbjct: 45 NGSVYATMIDILGKSNRVLEMKYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLLQEMVKESELEAACHIFRKYCYGWEVNSRITALNLLMKVLCQVNRSDLASQVFQEMNYQGCYPDRDSYRILMKGFCLEGKLEEATHLLYSMFWRISQKGSGEDIVVYRILLDALCDAGEVDDAIEILGKILRKGL 257
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP435_ARATH (Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12 Identity = 55/198 (27.78%), Postives = 93/198 (46.97%), Query Frame = 3 Query: 9 EAMDLLDKIHEKGIDPNTVMYNTVFSA---LGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKM-LAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSI 590 +A++L ++ + + N V SA LG L+ +H + + + + F N LI + R G +NEA +VF + + D+ISYN++I+ L +G EA F++M +GF P+ VT L+ +++ +F+ M P I Y ++D L R GR EA Y ++ + PD I Sbjct: 238 KALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSN---FVGNALINMYSRCGDINEARRVFRVMRDK----DVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEA---YRFIENIPIEPDHI 425
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP405_ARATH (Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12 Identity = 41/179 (22.91%), Postives = 86/179 (48.04%), Query Frame = 3 Query: 15 MDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLY 551 +DL ++ +T ++ + + + + +S L+++M+++ P++ T N L+ ++ + +A+ + L + + + L++ K G L+ AH F +QEK S DVV + LI +G A ++F +M+ G +PN +T+ L+ SG E + L+ Sbjct: 370 VDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLF 548
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12 Identity = 47/185 (25.41%), Postives = 90/185 (48.65%), Query Frame = 3 Query: 9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEAVDLYAKL 560 +A+DL + + +G+ N + +V S+ L + Y+ + + + ++ L+ F R G + +AI VFE L + D +S++S+I L +G+ +A F +M GF P VT++ ++ VE +++ M + G P + Y ++D L R+G+ AEA + K+ Sbjct: 232 KAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPET----DSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKM 412
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12 Identity = 54/228 (23.68%), Postives = 101/228 (44.30%), Query Frame = 3 Query: 9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGF---------------------------------SPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 +A++LL + + PN Y++V + + + LH K +G DVF + LI F + G+ +A+ VF+E+ D I +NS+I +N D A FK M+ GF D++ + L++ + K +E A R+F++M +++T++ ++ L ++G + EA+ L+ ++K G P+ IT Sbjct: 145 KALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIK---EGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTG----DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKER----DVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYIT 361
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12 Identity = 59/212 (27.83%), Postives = 90/212 (42.45%), Query Frame = 3 Query: 9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISH----------------------LHDLYQKMKQDGPSPDVFT---------YNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEK-GFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDL 548 EA++L ++ G+ PN V ++ A G + + H L D+Y K + S VF +N L+ F GK E + +FE L + KPD IS+ SL++ G+ G DE FK M E+ G P + YS ++ G+ K++ A L +M E P+ + LL+ S R VDL Sbjct: 371 EALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFE---PDSCVWGALLN----SCRLQNNVDL 575 HSP 2 Score: 70.0922 bits (170), Expect = 9.417e-12 Identity = 35/169 (20.71%), Postives = 86/169 (50.89%), Query Frame = 3 Query: 45 GIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLY 551 G+D + + ++F + ++ ++ +M DV T + L+ ++ R G + E +++ E+E+S + +I+S+N +++ ++G EA + F+++ GF PD VT S+++ G ++ + M + ++ +G + + ++D +SG + L+ Sbjct: 146 GLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDK----DVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLF 310
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR29_ARATH (Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana GN=GRP23 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12 Identity = 46/146 (31.51%), Postives = 78/146 (53.42%), Query Frame = 3 Query: 159 PDVFTYNILIASFGRAGKVNEAIKVFEEL-ENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKE-MQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSI 590 P VFT N +IA+ RA + +E+I +F+ + SN P+++SYN +IN GN+DEA ++ + F+P VTY L + + ++ A L +ML++G + + YN L+ G +AV+ + +LK + D I Sbjct: 178 PTVFTCNAIIAAMYRAKRYSESISLFQYFFKQSNIVPNVVSYNQIINAHCDEGNVDEALEVYRHILANAPFAPSSVTYRHLTKGLVQAGRIGDAASLLREMLSKGQAADSTVYNNLIRGYLDLGDFDKAVEFFDELKSKCTVYDGI 323 The following BLAST results are available for this feature:
BLAST of CX288860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 260
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288860 ID=CX288860; Name=CX288860; organism=Citrus clementina; type=EST; length=595bpback to top |