CX288860
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP305_ARATH (Pentatricopeptide repeat-containing protein At4g08210 OS=Arabidopsis thaliana GN=PCMP-E100 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12 Identity = 47/186 (25.27%), Postives = 95/186 (51.08%), Query Frame = 3 Query: 30 KIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKM-KQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPD 584 K+ ++ + N V + T+ S + + +LY++M + + + F Y+ ++ + G G + I V+E + N + D++ NS+++ KNG L EA+ FKE+ P +++TLI + K ++ A LF +M PN+V++N L+ G + A++ +++++GL D Sbjct: 61 KVFDEMSERNIVTWTTMVSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGDIQLGILVYERIGKENLRGDVVLMNSVVDMYVKNGRLIEANSSFKEI----LRPSSTSWNTLISGYCKAGLMDEAVTLFHRM----PQPNVVSWNCLISGFVDKG-SPRALEFLVRMQREGLVLD 237
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP184_ARATH (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12 Identity = 53/186 (28.49%), Postives = 91/186 (48.92%), Query Frame = 3 Query: 9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHD--LYQKM---KQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLY 551 +AMDL K+ E+G +P+ T+ S LG + L L ++M K+ G S F + LI+ +G+ G ++ A +VF ++ K D +++ ++I +NG EA F EM++ G SPD T ST++ G +E+ ++ NI L+D + GR EA+ ++ Sbjct: 216 DAMDLFRKMEEEGFEPDE---RTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLS--TFLGSKLISMYGKCGDLDSARRVFNQM----IKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVF 392
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12 Identity = 50/194 (25.77%), Postives = 91/194 (46.91%), Query Frame = 3 Query: 9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDS 587 EAMD ++ GI+P+ + +V + +L + ++ ++ G N LI + + G +++AI++F ++E D+IS++++I+ +GN A F EMQ P+ +T+ L+ + R FD M + P I Y L+D L R+G+ AV++ K + PDS Sbjct: 224 EAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGK----DVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEI---TKTMPMKPDS 410
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP352_ARATH (Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.210e-12 Identity = 41/177 (23.16%), Postives = 88/177 (49.72%), Query Frame = 3 Query: 69 YNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCK--PDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 Y+T+ + G+ +H +++M Q G ++N L+ + + ++ ++F+E+ K PD ISY LI +G ++A ++MQ KG + ++T++ K ++E+A L+++M+ +GC + YN+ + ++ +L ++ GL PD+I+ Sbjct: 105 YSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAAYNVRIMSAQKES-PERVKELIEEMSSMGLKPDTIS 280 HSP 2 Score: 70.0922 bits (170), Expect = 9.417e-12 Identity = 40/168 (23.81%), Postives = 81/168 (48.21%), Query Frame = 3 Query: 90 LGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEK--GFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDS 587 L K ++ S + L + K D + Y+ LI S+G+A N A++ FE+++ +S+N+L+N + N D+ F E+ ++ PD ++Y LI+ + + E A + +M +G + + +L L + G A +L+ ++ ++G D+ Sbjct: 77 LAKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDN 244 HSP 3 Score: 68.5514 bits (166), Expect = 2.740e-11 Identity = 48/188 (25.53%), Postives = 93/188 (49.47%), Query Frame = 3 Query: 9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIK-VFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQ 569 +A++++ ++ KG++ T+ + T+ S+L K ++ +L+ +M + G D YN+ I S + E +K + EE+ + KPD ISYN L+ + G LDEA ++ ++ +P+ T+ TLI + E +F K + P+ T L+ L + + +A L +K++ Sbjct: 192 KAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAAYNVRIMSAQKESP--ERVKELIEEMSSMGLKPDTISYNYLMTAYCERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVYMHKIPDFNTLKHLVVGLVENKKRDDAKGLIRTVKKK 377
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 9.417e-12 Identity = 44/188 (23.40%), Postives = 90/188 (47.87%), Query Frame = 3 Query: 30 KIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 ++ +K N +N+V + L KL + L++ M P D T+N +++ F + + EA+ F + + S+ S+++ ++++ + + F DV S L++ + K V A R+FD+M N+V++N L+ C E++G EA+D++ + + + PD +T Sbjct: 76 QVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSM----PERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEM----GDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVT 255
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP128_ARATH (Pentatricopeptide repeat-containing protein At1g77170 OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 9.417e-12 Identity = 39/159 (24.53%), Postives = 88/159 (55.35%), Query Frame = 3 Query: 132 QKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFK-----EMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 +K+ + P + ++N +I AG+ NEA+++F +++ S +PD + S+ G G+L A K + +EK D++ ++LI+ +GK ++++A +F++M N+V+++ ++ +G T EA++ + ++++ G+ P+ IT Sbjct: 172 RKVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKS---DIMMLNSLIDMYGKCGRMDLASHIFEEMRQR----NVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKIT 323
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR88_ARATH (Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.230e-11 Identity = 49/160 (30.63%), Postives = 86/160 (53.75%), Query Frame = 3 Query: 6 AEAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKV---NEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSP 476 AEA D+ +K+ + NTV +NT+ S K ++++ L+ M P DV T+N +I+ + G + EA K+F+E+ + D S+N++I+ KN + EA + F++M E+ + V++S +I F + +V+ A LF KM + SP Sbjct: 57 AEARDIFEKLEAR----NTVTWNTMISGYVKRREMNQARKLFDVM----PKRDVVTWNTMISGYVSCGGIRFLEEARKLFDEMPSR----DSFSWNTMISGYAKNRRIGEALLLFEKMPER----NAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSP 200
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP433_ARATH (Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.230e-11 Identity = 45/179 (25.14%), Postives = 89/179 (49.72%), Query Frame = 3 Query: 6 AEAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEA 539 +EA+++ ++ + ++P+ V V SA L + + + G + V N +I + ++G + +A+ VFE + N ++++ ++I L +G+ EA F M + G P+ VT+ ++ V++ RLF+ M ++ G PNI Y ++D L R+G+ EA Sbjct: 232 SEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERN----VVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREA 406
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.230e-11 Identity = 46/206 (22.33%), Postives = 90/206 (43.69%), Query Frame = 3 Query: 54 PNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIAS-----------------------------------FGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQ 566 P+ ++N+V + KL+ H Y++M SP +T+ +I S + + G + A +VF+ + + I+++NSL++ +NG DEA F +M+E GF PD T+ +L+ +T V + + +++EG N+ L++ R G +A +++ K+K+ Sbjct: 70 PDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKS----IVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKE 271
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR83_ARATH (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.606e-11 Identity = 43/187 (22.99%), Postives = 95/187 (50.80%), Query Frame = 3 Query: 3 TAEAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEAVDLYAKL 560 ++EA+ + + +G PN + ++ +A + ++ L+ ++ + G + +V N LI + + G + ++ +VF E+ + + +++S+ S++ G +G EA F +M G PD + + ++ VE + F+ M +E G +P+ YN ++D L R+G+ EA +L ++ Sbjct: 294 SSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVD---RRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERM 477 The following BLAST results are available for this feature:
BLAST of CX288860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 260
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288860 ID=CX288860; Name=CX288860; organism=Citrus clementina; type=EST; length=595bpback to top |