CX288860

Overview
NameCX288860
Unique NameCX288860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP305_ARATH (Pentatricopeptide repeat-containing protein At4g08210 OS=Arabidopsis thaliana GN=PCMP-E100 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 47/186 (25.27%), Postives = 95/186 (51.08%), Query Frame = 3
Query:   30 KIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKM-KQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPD 584
            K+ ++  + N V + T+ S      + +   +LY++M   +  + + F Y+ ++ + G  G +   I V+E +   N + D++  NS+++   KNG L EA+  FKE+      P   +++TLI  + K   ++ A  LF +M      PN+V++N L+      G +  A++   +++++GL  D
Sbjct:   61 KVFDEMSERNIVTWTTMVSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGDIQLGILVYERIGKENLRGDVVLMNSVVDMYVKNGRLIEANSSFKEI----LRPSSTSWNTLISGYCKAGLMDEAVTLFHRM----PQPNVVSWNCLISGFVDKG-SPRALEFLVRMQREGLVLD 237          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP184_ARATH (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 53/186 (28.49%), Postives = 91/186 (48.92%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHD--LYQKM---KQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLY 551
            +AMDL  K+ E+G +P+     T+ S LG    +  L    L ++M   K+ G S   F  + LI+ +G+ G ++ A +VF ++     K D +++ ++I    +NG   EA   F EM++ G SPD  T ST++   G    +E+  ++           NI     L+D   + GR  EA+ ++
Sbjct:  216 DAMDLFRKMEEEGFEPDE---RTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLS--TFLGSKLISMYGKCGDLDSARRVFNQM----IKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVF 392          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 50/194 (25.77%), Postives = 91/194 (46.91%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDS 587
            EAMD   ++   GI+P+ +   +V  +  +L  +     ++   ++ G        N LI  + + G +++AI++F ++E      D+IS++++I+    +GN   A   F EMQ     P+ +T+  L+         +   R FD M  +    P I  Y  L+D L R+G+   AV++    K   + PDS
Sbjct:  224 EAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGK----DVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEI---TKTMPMKPDS 410          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP352_ARATH (Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.210e-12
Identity = 41/177 (23.16%), Postives = 88/177 (49.72%), Query Frame = 3
Query:   69 YNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCK--PDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            Y+T+  + G+    +H    +++M Q G      ++N L+ +   +   ++  ++F+E+     K  PD ISY  LI     +G  ++A    ++MQ KG     + ++T++    K  ++E+A  L+++M+ +GC  +   YN+ +   ++        +L  ++   GL PD+I+
Sbjct:  105 YSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAAYNVRIMSAQKES-PERVKELIEEMSSMGLKPDTIS 280          

HSP 2 Score: 70.0922 bits (170), Expect = 9.417e-12
Identity = 40/168 (23.81%), Postives = 81/168 (48.21%), Query Frame = 3
Query:   90 LGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEK--GFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDS 587
            L K ++ S +  L +  K D    +   Y+ LI S+G+A   N A++ FE+++        +S+N+L+N    + N D+    F E+ ++     PD ++Y  LI+ +  +   E A  +  +M  +G     + +  +L  L + G    A +L+ ++ ++G   D+
Sbjct:   77 LAKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDN 244          

HSP 3 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 48/188 (25.53%), Postives = 93/188 (49.47%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIK-VFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQ 569
            +A++++ ++  KG++  T+ + T+ S+L K  ++    +L+ +M + G   D   YN+ I S  +     E +K + EE+ +   KPD ISYN L+    + G LDEA   ++ ++    +P+  T+ TLI     +   E    +F K +     P+  T   L+  L  + +  +A  L   +K++
Sbjct:  192 KAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAAYNVRIMSAQKESP--ERVKELIEEMSSMGLKPDTISYNYLMTAYCERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVYMHKIPDFNTLKHLVVGLVENKKRDDAKGLIRTVKKK 377          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.417e-12
Identity = 44/188 (23.40%), Postives = 90/188 (47.87%), Query Frame = 3
Query:   30 KIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            ++ +K    N   +N+V + L KL  +     L++ M    P  D  T+N +++ F +  +  EA+  F  +       +  S+ S+++      ++++       + +  F  DV   S L++ + K   V  A R+FD+M       N+V++N L+ C E++G   EA+D++  + +  + PD +T
Sbjct:   76 QVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSM----PERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEM----GDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVT 255          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP128_ARATH (Pentatricopeptide repeat-containing protein At1g77170 OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.417e-12
Identity = 39/159 (24.53%), Postives = 88/159 (55.35%), Query Frame = 3
Query:  132 QKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFK-----EMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            +K+  + P   + ++N +I     AG+ NEA+++F +++ S  +PD  +  S+    G  G+L  A    K     + +EK    D++  ++LI+ +GK  ++++A  +F++M       N+V+++ ++     +G T EA++ + ++++ G+ P+ IT
Sbjct:  172 RKVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKS---DIMMLNSLIDMYGKCGRMDLASHIFEEMRQR----NVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKIT 323          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR88_ARATH (Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.230e-11
Identity = 49/160 (30.63%), Postives = 86/160 (53.75%), Query Frame = 3
Query:    6 AEAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKV---NEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSP 476
            AEA D+ +K+  +    NTV +NT+ S   K ++++    L+  M    P  DV T+N +I+ +   G +    EA K+F+E+ +     D  S+N++I+   KN  + EA + F++M E+    + V++S +I  F +  +V+ A  LF KM  +  SP
Sbjct:   57 AEARDIFEKLEAR----NTVTWNTMISGYVKRREMNQARKLFDVM----PKRDVVTWNTMISGYVSCGGIRFLEEARKLFDEMPSR----DSFSWNTMISGYAKNRRIGEALLLFEKMPER----NAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSP 200          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP433_ARATH (Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.230e-11
Identity = 45/179 (25.14%), Postives = 89/179 (49.72%), Query Frame = 3
Query:    6 AEAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEA 539
            +EA+++  ++  + ++P+ V    V SA   L  +     +   +   G +  V   N +I  + ++G + +A+ VFE +   N    ++++ ++I  L  +G+  EA   F  M + G  P+ VT+  ++        V++  RLF+ M ++ G  PNI  Y  ++D L R+G+  EA
Sbjct:  232 SEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERN----VVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREA 406          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.230e-11
Identity = 46/206 (22.33%), Postives = 90/206 (43.69%), Query Frame = 3
Query:   54 PNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIAS-----------------------------------FGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQ 566
            P+  ++N+V  +  KL+   H    Y++M     SP  +T+  +I S                                   + + G +  A +VF+ +   +    I+++NSL++   +NG  DEA   F +M+E GF PD  T+ +L+    +T  V +   +   +++EG   N+     L++   R G   +A +++ K+K+
Sbjct:   70 PDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKS----IVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKE 271          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PPR83_ARATH (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.606e-11
Identity = 43/187 (22.99%), Postives = 95/187 (50.80%), Query Frame = 3
Query:    3 TAEAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEAVDLYAKL 560
            ++EA+ +  +   +G  PN   + ++ +A   +  ++    L+ ++ + G + +V   N LI  + + G + ++ +VF E+ +   + +++S+ S++   G +G   EA   F +M   G  PD + +  ++        VE   + F+ M +E G +P+   YN ++D L R+G+  EA +L  ++
Sbjct:  294 SSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVD---RRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERM 477          
The following BLAST results are available for this feature:
BLAST of CX288860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 260
Match NameE-valueIdentityDescription
PP305_ARATH5.521e-1225.27Pentatricopeptide repeat-containing protein At4g08... [more]
PP184_ARATH5.521e-1228.49Pentatricopeptide repeat-containing protein At2g34... [more]
PP165_ARATH5.521e-1225.77Pentatricopeptide repeat-containing protein At2g20... [more]
PP352_ARATH7.210e-1223.16Pentatricopeptide repeat-containing protein At4g36... [more]
PP151_ARATH9.417e-1223.40Pentatricopeptide repeat-containing protein At2g13... [more]
PP128_ARATH9.417e-1224.53Pentatricopeptide repeat-containing protein At1g77... [more]
PPR88_ARATH1.230e-1130.63Pentatricopeptide repeat-containing protein At1g62... [more]
PP433_ARATH1.230e-1125.14Pentatricopeptide repeat-containing protein At5g56... [more]
PP182_ARATH1.230e-1122.33Pentatricopeptide repeat-containing protein At2g33... [more]
PPR83_ARATH1.606e-1122.99Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionC02006C04SK IF1 Citrus clementina cDNA clone C02006C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288860 ID=CX288860; Name=CX288860; organism=Citrus clementina; type=EST; length=595bp
AGACAGCAGAGGCTATGGACCTGCTTGATAAGATTCATGAAAAAGGAATA
GACCCCAATACAGTCATGTATAACACAGTATTTTCAGCTCTTGGCAAGTT
GAAGCAAATATCACATCTGCATGATCTTTACCAAAAAATGAAGCAAGATG
GCCCTTCTCCAGATGTATTTACCTACAATATCCTGATTGCAAGCTTTGGT
AGGGCAGGAAAGGTTAATGAGGCCATTAAAGTTTTTGAAGAACTAGAGAA
TAGCAATTGTAAACCTGATATTATCTCATATAATTCATTGATCAATTGTC
TTGGGAAGAATGGTAATCTTGATGAAGCTCACATGAGGTTTAAAGAGATG
CAGGAGAAAGGGTTCAGTCCTGATGTTGTTACATATAGTACGCTAATTGA
ATGCTTTGGCAAGACGGACAAAGTTGAGATGGCATGTAGATTGTTTGACA
AGATGCTTGCTGAAGGATGCTCCCCCAACATTGTGACATACAATATCTTA
CTTGACTGTCTTGAAAGAAGTGGGAGAACTGCTGAAGCAGTGGATCTTTA
TGCAAAACTTAAGCAACAGGGGTTAACACCTGATTCAATCACATA
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