CX288860
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 1.606e-11 Identity = 43/185 (23.24%), Postives = 91/185 (49.19%), Query Frame = 3 Query: 9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEAVDLYAKL 560 EA+ L ++ K + PN + +V S+ L + +++ K+ V LI F + G +++A+ +FE++ D +++++I +G +++ + F+ M+ + PD +T+ L+ T +VE + F +M+++ G P+I Y ++D L R+G +A + KL Sbjct: 213 EALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK----DTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKL 393
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP361_ARATH (Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana GN=At5g02830 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11 Identity = 41/145 (28.28%), Postives = 70/145 (48.28%), Query Frame = 3 Query: 54 PNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIEC---FGKTDKVEMACRLFDKMLAEGCSPN 479 P T YN + A G +L +MK G SP+ T++ LI G +G V A+++ + ++ +PD+++Y + I +N L A F+EM+ P+ VTY+TL++ +G +V ++ M G PN Sbjct: 524 PTTATYNILLKACGT--DYYRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRNAGYKPN 666 HSP 2 Score: 67.0106 bits (162), Expect = 7.972e-11 Identity = 41/145 (28.28%), Postives = 74/145 (51.03%), Query Frame = 3 Query: 159 PDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAE---AVDLYAKLKQQGLTPD 584 P TYNIL+ + G ++ +E+++ P+ I++++LI+ G +G+++ A + M G PDVV Y+T I+ + +++A LF++M PN VTYN LL + G E + +Y ++ G P+ Sbjct: 524 PTTATYNILLKACGT--DYYRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRNAGYKPN 666
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11 Identity = 43/181 (23.76%), Postives = 90/181 (49.72%), Query Frame = 3 Query: 9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEAVDL 548 + + L + E+GI PN+ ++ +L + ++Q + + DV LI+ + + G++ +A K+FE ++ K D++++N++I+ ++GN D+A F+EM + PD +T+ ++ V + F+ M+ + P Y ++D L R+G+ EA+ L Sbjct: 267 DGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMK----KKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKL 443
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11 Identity = 52/180 (28.89%), Postives = 86/180 (47.78%), Query Frame = 3 Query: 42 KGIDPNTVMYNTVFSA---LGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQ 569 K PN+V +V A L L+Q +H + D P + + L+ +GR GK+ +VF+ + + D++S+NSLI+ G +G +A F+EM G SP VT+ +++ VE RLF+ M + G P I Y ++D L R+ R EA + ++ + Sbjct: 279 KDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVI---SALVTMYGRCGKLEVGQRVFDRMHDR----DVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTE 451
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP189_ARATH (Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11 Identity = 45/181 (24.86%), Postives = 83/181 (45.86%), Query Frame = 3 Query: 9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTY-NILLDCLERSGRTAEAVDL 548 +A+ ++ + G+D + Y V A L + H ++ + G + N L+ + + G + EA + F ++ N D++S+N+++ G +G D+A + M G PD VT+ L+ + VE C +F+ M+ + P V + ++D R G AEA DL Sbjct: 320 QALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANK----DLVSWNTMLFAFGVHGLADQALKLYDNMIASGIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIPLEVDHVTCMIDMFGRGGHLAEAKDL 496
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP441_ARATH (Pentatricopeptide repeat-containing protein At5g61800 OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11 Identity = 47/195 (24.10%), Postives = 90/195 (46.15%), Query Frame = 3 Query: 12 AMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCS-PNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 A+ L D+ ++ + V YN + L K ++I +L+ M P D+ ++N LI+ + + EAIK+F+E+ KPD ++ S ++ ++G+ + + K D + L++ + K ++ A +F E CS + T+N ++ L G VD + K+ G+ PD +T Sbjct: 171 ALQLFDENPQRDV----VTYNVLIDGLVKAREIVRARELFDSM----PLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIF-----ELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVT 352
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP310_ARATH (Pentatricopeptide repeat-containing protein At4g14190, chloroplastic OS=Arabidopsis thaliana GN=At4g14190 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11 Identity = 47/170 (27.65%), Postives = 76/170 (44.71%), Query Frame = 3 Query: 99 LKQISHLHDL---YQKMKQDGPSP-DVFTYNILIASFGRAGKVNEAIKVFEEL-ENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 L+Q S LH++ + K PS Y +I ++EAI+ F + ++ P + YNS+I+ +G +EA M+E G P TY LIE +GK + +M ++GC + VTYN+L+ R G +Y L + +T + T Sbjct: 105 LRQSSRLHEILPVFDTWKNLEPSRISENNYERIIRFLCEEKSMSEAIRAFRSMIDDHELSPSLEIYNSIIHSYADDGKFEEAMFYLNHMKENGLLPITETYDGLIEAYGKWKMYDEIVLCLKRMESDGCVRDHVTYNLLIREFSRGGLLKRMEQMYQSLMSRKMTLEPST 274
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: YLE1_SCHPO (Pentatricopeptide repeat-containing protein C1093.01 OS=Schizosaccharomyces pombe GN=SPAC1093.01 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11 Identity = 37/130 (28.46%), Postives = 71/130 (54.62%), Query Frame = 3 Query: 123 DLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQ-EKGFSPDVVTYSTLIECFGKT-DKVEMACRLFDKMLAEGCSPNIVTYNILLD 506 +++++ K+ P VF YN +++ GRA + E K+F+E++ S P ++Y ++IN + G+ A F EM+ + + P V Y+T+I+ +T E A ++++ A P+ TY +L+D Sbjct: 912 NIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMENQPNYQPRVAPYNTMIQFEVQTMFNREKALFYYNRLCATDIEPSSHTYKLLMD 1041
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP398_ARATH (Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11 Identity = 36/145 (24.83%), Postives = 79/145 (54.48%), Query Frame = 3 Query: 162 DVFTYNILIASFGRAGKVNEAIKVFEELEN-SNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 DV+ +N L++ + + ++ ++VF+ L N S C PD ++ ++I G G M + + G+ DVV S+L+ + K + E + ++FD+M ++ ++N ++ C +SG +A++L+ +++ G P+S++ Sbjct: 70 DVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPER----DVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVS 210
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP329_ARATH (Pentatricopeptide repeat-containing protein At4g20770 OS=Arabidopsis thaliana GN=PCMP-E35 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11 Identity = 45/182 (24.73%), Postives = 85/182 (46.70%), Query Frame = 3 Query: 9 EAMDLLDKIHEKGI-DPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKM-LAEGCSPNIVTYNILLDCLERSGRTAEAVDL 548 +A+ L ++H+ + PN + TV S+ +L + H + + + G D F L + + G+++ A + F+ + N + +N +I+ G NG DEA +++M G PD +T+ +++ + VE + M G P + Y ++DCL R+GR +A L Sbjct: 501 KALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNT----VIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKL 678 The following BLAST results are available for this feature:
BLAST of CX288860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 260
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288860 ID=CX288860; Name=CX288860; organism=Citrus clementina; type=EST; length=595bpback to top |