CX288860

Overview
NameCX288860
Unique NameCX288860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.606e-11
Identity = 43/185 (23.24%), Postives = 91/185 (49.19%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEAVDLYAKL 560
            EA+ L  ++  K + PN +   +V S+   L  +     +++  K+      V     LI  F + G +++A+ +FE++       D  +++++I     +G  +++ + F+ M+ +   PD +T+  L+     T +VE   + F +M+++ G  P+I  Y  ++D L R+G   +A +   KL
Sbjct:  213 EALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK----DTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKL 393          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP361_ARATH (Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana GN=At5g02830 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 41/145 (28.28%), Postives = 70/145 (48.28%), Query Frame = 3
Query:   54 PNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIEC---FGKTDKVEMACRLFDKMLAEGCSPN 479
            P T  YN +  A G         +L  +MK  G SP+  T++ LI   G +G V  A+++   + ++  +PD+++Y + I    +N  L  A   F+EM+     P+ VTY+TL++    +G   +V     ++  M   G  PN
Sbjct:  524 PTTATYNILLKACGT--DYYRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRNAGYKPN 666          

HSP 2 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 41/145 (28.28%), Postives = 74/145 (51.03%), Query Frame = 3
Query:  159 PDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAE---AVDLYAKLKQQGLTPD 584
            P   TYNIL+ + G         ++ +E+++    P+ I++++LI+  G +G+++ A    + M   G  PDVV Y+T I+   +   +++A  LF++M      PN VTYN LL    + G   E    + +Y  ++  G  P+
Sbjct:  524 PTTATYNILLKACGT--DYYRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRNAGYKPN 666          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 43/181 (23.76%), Postives = 90/181 (49.72%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEAVDL 548
            + + L   + E+GI PN+   ++      +L  +     ++Q + +     DV     LI+ + + G++ +A K+FE ++    K D++++N++I+   ++GN D+A   F+EM +    PD +T+  ++        V +    F+ M+ +    P    Y  ++D L R+G+  EA+ L
Sbjct:  267 DGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMK----KKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKL 443          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 52/180 (28.89%), Postives = 86/180 (47.78%), Query Frame = 3
Query:   42 KGIDPNTVMYNTVFSA---LGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQ 569
            K   PN+V   +V  A   L  L+Q   +H    +   D   P +   + L+  +GR GK+    +VF+ + +     D++S+NSLI+  G +G   +A   F+EM   G SP  VT+ +++        VE   RLF+ M  + G  P I  Y  ++D L R+ R  EA  +   ++ +
Sbjct:  279 KDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVI---SALVTMYGRCGKLEVGQRVFDRMHDR----DVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTE 451          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP189_ARATH (Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 45/181 (24.86%), Postives = 83/181 (45.86%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTY-NILLDCLERSGRTAEAVDL 548
            +A+    ++ + G+D +   Y  V  A   L  + H   ++  +   G     +  N L+  + + G + EA + F ++ N     D++S+N+++   G +G  D+A   +  M   G  PD VT+  L+     +  VE  C +F+ M+ +   P  V +   ++D   R G  AEA DL
Sbjct:  320 QALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANK----DLVSWNTMLFAFGVHGLADQALKLYDNMIASGIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIPLEVDHVTCMIDMFGRGGHLAEAKDL 496          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP441_ARATH (Pentatricopeptide repeat-containing protein At5g61800 OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 47/195 (24.10%), Postives = 90/195 (46.15%), Query Frame = 3
Query:   12 AMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCS-PNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            A+ L D+  ++ +    V YN +   L K ++I    +L+  M    P  D+ ++N LI+ + +     EAIK+F+E+     KPD ++  S ++   ++G+  +        + K    D    + L++ + K   ++ A  +F     E CS   + T+N ++  L   G     VD + K+   G+ PD +T
Sbjct:  171 ALQLFDENPQRDV----VTYNVLIDGLVKAREIVRARELFDSM----PLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIF-----ELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVT 352          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP310_ARATH (Pentatricopeptide repeat-containing protein At4g14190, chloroplastic OS=Arabidopsis thaliana GN=At4g14190 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 47/170 (27.65%), Postives = 76/170 (44.71%), Query Frame = 3
Query:   99 LKQISHLHDL---YQKMKQDGPSP-DVFTYNILIASFGRAGKVNEAIKVFEEL-ENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            L+Q S LH++   +   K   PS      Y  +I        ++EAI+ F  + ++    P +  YNS+I+    +G  +EA      M+E G  P   TY  LIE +GK    +       +M ++GC  + VTYN+L+    R G       +Y  L  + +T +  T
Sbjct:  105 LRQSSRLHEILPVFDTWKNLEPSRISENNYERIIRFLCEEKSMSEAIRAFRSMIDDHELSPSLEIYNSIIHSYADDGKFEEAMFYLNHMKENGLLPITETYDGLIEAYGKWKMYDEIVLCLKRMESDGCVRDHVTYNLLIREFSRGGLLKRMEQMYQSLMSRKMTLEPST 274          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: YLE1_SCHPO (Pentatricopeptide repeat-containing protein C1093.01 OS=Schizosaccharomyces pombe GN=SPAC1093.01 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 37/130 (28.46%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  123 DLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQ-EKGFSPDVVTYSTLIECFGKT-DKVEMACRLFDKMLAEGCSPNIVTYNILLD 506
            +++++ K+    P VF YN +++  GRA +  E  K+F+E++ S   P  ++Y ++IN   + G+   A   F EM+ +  + P V  Y+T+I+   +T    E A   ++++ A    P+  TY +L+D
Sbjct:  912 NIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMENQPNYQPRVAPYNTMIQFEVQTMFNREKALFYYNRLCATDIEPSSHTYKLLMD 1041          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP398_ARATH (Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 36/145 (24.83%), Postives = 79/145 (54.48%), Query Frame = 3
Query:  162 DVFTYNILIASFGRAGKVNEAIKVFEELEN-SNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            DV+ +N L++ + +    ++ ++VF+ L N S C PD  ++ ++I   G  G      M    + + G+  DVV  S+L+  + K +  E + ++FD+M       ++ ++N ++ C  +SG   +A++L+ +++  G  P+S++
Sbjct:   70 DVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPER----DVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVS 210          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP329_ARATH (Pentatricopeptide repeat-containing protein At4g20770 OS=Arabidopsis thaliana GN=PCMP-E35 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 45/182 (24.73%), Postives = 85/182 (46.70%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGI-DPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKM-LAEGCSPNIVTYNILLDCLERSGRTAEAVDL 548
            +A+ L  ++H+  +  PN   + TV S+  +L  + H    +  + + G   D F    L   + + G+++ A + F+ +   N     + +N +I+  G NG  DEA   +++M   G  PD +T+ +++     +  VE    +   M    G  P +  Y  ++DCL R+GR  +A  L
Sbjct:  501 KALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNT----VIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKL 678          
The following BLAST results are available for this feature:
BLAST of CX288860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 260
Match NameE-valueIdentityDescription
PP145_ARATH1.606e-1123.24Pentatricopeptide repeat-containing protein At2g02... [more]
PP361_ARATH2.098e-1128.28Pentatricopeptide repeat-containing protein At5g02... [more]
PP316_ARATH2.098e-1123.76Pentatricopeptide repeat-containing protein At4g16... [more]
PP265_ARATH2.098e-1128.89Pentatricopeptide repeat-containing protein At3g46... [more]
PP189_ARATH2.098e-1124.86Pentatricopeptide repeat-containing protein At2g36... [more]
PP441_ARATH2.740e-1124.10Pentatricopeptide repeat-containing protein At5g61... [more]
PP310_ARATH2.740e-1127.65Pentatricopeptide repeat-containing protein At4g14... [more]
YLE1_SCHPO3.578e-1128.46Pentatricopeptide repeat-containing protein C1093.... [more]
PP398_ARATH3.578e-1124.83Pentatricopeptide repeat-containing protein At5g27... [more]
PP329_ARATH3.578e-1124.73Pentatricopeptide repeat-containing protein At4g20... [more]

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Properties
Property NameValue
Genbank descriptionC02006C04SK IF1 Citrus clementina cDNA clone C02006C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288860 ID=CX288860; Name=CX288860; organism=Citrus clementina; type=EST; length=595bp
AGACAGCAGAGGCTATGGACCTGCTTGATAAGATTCATGAAAAAGGAATA
GACCCCAATACAGTCATGTATAACACAGTATTTTCAGCTCTTGGCAAGTT
GAAGCAAATATCACATCTGCATGATCTTTACCAAAAAATGAAGCAAGATG
GCCCTTCTCCAGATGTATTTACCTACAATATCCTGATTGCAAGCTTTGGT
AGGGCAGGAAAGGTTAATGAGGCCATTAAAGTTTTTGAAGAACTAGAGAA
TAGCAATTGTAAACCTGATATTATCTCATATAATTCATTGATCAATTGTC
TTGGGAAGAATGGTAATCTTGATGAAGCTCACATGAGGTTTAAAGAGATG
CAGGAGAAAGGGTTCAGTCCTGATGTTGTTACATATAGTACGCTAATTGA
ATGCTTTGGCAAGACGGACAAAGTTGAGATGGCATGTAGATTGTTTGACA
AGATGCTTGCTGAAGGATGCTCCCCCAACATTGTGACATACAATATCTTA
CTTGACTGTCTTGAAAGAAGTGGGAGAACTGCTGAAGCAGTGGATCTTTA
TGCAAAACTTAAGCAACAGGGGTTAACACCTGATTCAATCACATA
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