CX288860
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11 Identity = 48/190 (25.26%), Postives = 92/190 (48.42%), Query Frame = 3 Query: 30 KIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKG-FSPDVVTYSTLIECFGKTDK-VEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 ++ E I+P++V+YN++ S K + D+++ M++ G DV +++ ++A +G G+ +AIKVF E P+ Y ++I + + + + + G F DV +LI+ F K + E A ++FDKM N+VT+ +++ + G EA+ + + G D T Sbjct: 87 RLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKR-DVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKM----SELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFT 271
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11 Identity = 47/171 (27.49%), Postives = 78/171 (45.61%), Query Frame = 3 Query: 39 EKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKML-AEGCSPNIVTYNILLDCLERSGRTAEAVDL 548 ++G++ + V ++ SA G L + +Y ++++G DV L+ F R G A+ +F L N D+ ++ + I + GN + A F +M E+G PD V + + V+ +F ML G SP V Y ++D L R+G EAV L Sbjct: 463 QEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNR----DVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQL 629
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP237_ARATH (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11 Identity = 51/186 (27.42%), Postives = 85/186 (45.70%), Query Frame = 3 Query: 9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCS--PNIVTYNILLDCLERSGRTAEAVDLYAKL 560 E+ L ++ GI P+ V +A L + H + G + + N L+ + + GK++ A +VF+ + K DI+S+N+++ G +G EA F MQE G +PD VT ++ + V+ +LF+ M + P I YN + D L R+G EA D K+ Sbjct: 392 ESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMH----KRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKM 573
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP191_ARATH (Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.674e-11 Identity = 42/174 (24.14%), Postives = 88/174 (50.57%), Query Frame = 3 Query: 45 GIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKP-DIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEAVDLYAKL 560 G PNTV +++ +L + +++ ++G +++ +I ++ + G + A +VF+ NCK +I++ ++I +G+ D A F +MQ G PD VT + ++ F + +MA +FD ML + P + Y ++ L R+G+ ++A++ +K+ Sbjct: 361 GSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFD-----NCKDRSLIAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVLSRAGKLSDAMEFISKM 529
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP144_ARATH (Pentatricopeptide repeat-containing protein At2g02750 OS=Arabidopsis thaliana GN=PCMP-E22 PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 4.674e-11 Identity = 48/184 (26.09%), Postives = 88/184 (47.83%), Query Frame = 3 Query: 57 NTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLG-----KNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 N + +N+V S + Q +L++K+ +G PD T+N LI+ F + GKV EA K FE + + P + SL++ KNG H+ K E+ D+ ++LI+ + K A R+FD+ + P V +N+++ + G A++++ L+++ + P T Sbjct: 297 NLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHV-IKAAAER----DIFVLTSLIDMYMKCGLSSWARRIFDRFEPKPKDP--VFWNVMISGYGKHGECESAIEIFELLREEKVEPSLAT 473
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11 Identity = 49/181 (27.07%), Postives = 88/181 (48.62%), Query Frame = 3 Query: 9 EAMDLLDKIHEKGIDPNTVMYNTVFSA---LGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEA 539 EA+ L ++ ++P+ V SA LG L+Q +H K + D +LI + + G++ EA++VF+ ++ K + ++ +LI+ +G+ EA +F EMQ+ G P+V+T++ ++ T VE +F M + P I Y ++D L R+G EA Sbjct: 230 EALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRI---RMDSVLGCVLIDMYAKCGEMEEALEVFKNIK----KKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEA 403
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11 Identity = 42/180 (23.33%), Postives = 95/180 (52.78%), Query Frame = 3 Query: 57 NTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSN-CKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 + ++ ++ K ++S+ ++ M Q ++ +N++I + R G+V +A F+++ N +PD+I+ IN L + L+ + M+ +GF P +V + LI+ +G+ +++ A +FD+M + N++++N ++ ++G+ A++L+ +L L PDS T Sbjct: 266 DVMVMTSILDMYSKYGEVSYAERIFNGMIQR----NIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITS---INLLPASAILEGRTIHGYAMR-RGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEK----NVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTT 433
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP206_ARATH (Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11 Identity = 50/195 (25.64%), Postives = 99/195 (50.77%), Query Frame = 3 Query: 30 KIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEEL-ENSNCK-PDIISYNSLI---NCLGKNGNLDEAHMRFKEMQEKGF--SPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 K++++ NTV NT+ S K +S DL+ M P V T+ IL+ + R +EA K+F ++ +S+C PD +++ +L+ N + + H ++ GF +P + + L++ + + ++++AC LF+++ + + VT+N L+ E+ G E++ L+ K++Q G P T Sbjct: 69 KVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAM----PDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKL---GFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEK----DSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFT 252 HSP 2 Score: 67.0106 bits (162), Expect = 7.972e-11 Identity = 51/193 (26.42%), Postives = 87/193 (45.08%), Query Frame = 3 Query: 15 MDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKML-AEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSI 590 + L K+ + + + TV A + L+ + + G +VF+ + L+ + + G + +A++VFEE+ + N +S+N+LI+ NG+ + A F +M E G PD V+ ++ VE F M G +P Y +LD L R+GR AEA L + + PD I Sbjct: 437 LKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNA----VSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKL---MDEMPFEPDEI 622
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP200_ARATH (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11 Identity = 42/181 (23.20%), Postives = 89/181 (49.17%), Query Frame = 3 Query: 57 NTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSP--NIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 + V +N++ K I +L+ +M P + ++N +I+ F R G+ +A+ +F E++ + KPD + SL+N G ++ + + F + + + LI+ + K +E +F+ C+P + +N ++ L +G A+DL+++L++ GL PDS++ Sbjct: 191 DVVAWNSMIMGFAKCGLIDQAQNLFDEM----PQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFE------CAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVS 361
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP261_ARATH (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11 Identity = 42/196 (21.43%), Postives = 99/196 (50.51%), Query Frame = 3 Query: 6 AEAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593 ++A +L +K+ E+ NTV ++T+ K + ++ KM P+ +V T+ I+IA + G + EA ++ +++ S K D + S++ ++G L ++ + + L++ + K ++ A +F+ + + ++V++N +L L G EA++L+++++++G+ PD +T Sbjct: 233 SKAFELFEKMPER----NTVSWSTMVMGYSKAGDMEMARVMFDKMPL--PAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKK----DLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVT 418 The following BLAST results are available for this feature:
BLAST of CX288860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 260
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288860 ID=CX288860; Name=CX288860; organism=Citrus clementina; type=EST; length=595bpback to top |