CX288860

Overview
NameCX288860
Unique NameCX288860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 48/190 (25.26%), Postives = 92/190 (48.42%), Query Frame = 3
Query:   30 KIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKG-FSPDVVTYSTLIECFGKTDK-VEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            ++ E  I+P++V+YN++ S   K    +   D+++ M++ G   DV +++ ++A +G  G+  +AIKVF E       P+   Y ++I     +  +    +    + + G F  DV    +LI+ F K +   E A ++FDKM       N+VT+ +++    + G   EA+  +  +   G   D  T
Sbjct:   87 RLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKR-DVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKM----SELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFT 271          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 47/171 (27.49%), Postives = 78/171 (45.61%), Query Frame = 3
Query:   39 EKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKML-AEGCSPNIVTYNILLDCLERSGRTAEAVDL 548
            ++G++ + V   ++ SA G L  +     +Y  ++++G   DV     L+  F R G    A+ +F  L N     D+ ++ + I  +   GN + A   F +M E+G  PD V +   +        V+    +F  ML   G SP  V Y  ++D L R+G   EAV L
Sbjct:  463 QEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNR----DVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQL 629          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP237_ARATH (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 51/186 (27.42%), Postives = 85/186 (45.70%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCS--PNIVTYNILLDCLERSGRTAEAVDLYAKL 560
            E+  L  ++   GI P+      V +A   L  + H    +      G + +    N L+  + + GK++ A +VF+ +     K DI+S+N+++   G +G   EA   F  MQE G +PD VT   ++     +  V+   +LF+ M     +  P I  YN + D L R+G   EA D   K+
Sbjct:  392 ESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMH----KRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKM 573          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP191_ARATH (Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.674e-11
Identity = 42/174 (24.14%), Postives = 88/174 (50.57%), Query Frame = 3
Query:   45 GIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKP-DIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEAVDLYAKL 560
            G  PNTV  +++  +L     +    +++    ++G   +++    +I ++ + G +  A +VF+     NCK   +I++ ++I     +G+ D A   F +MQ  G  PD VT + ++  F  +   +MA  +FD ML +    P +  Y  ++  L R+G+ ++A++  +K+
Sbjct:  361 GSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFD-----NCKDRSLIAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVLSRAGKLSDAMEFISKM 529          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP144_ARATH (Pentatricopeptide repeat-containing protein At2g02750 OS=Arabidopsis thaliana GN=PCMP-E22 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.674e-11
Identity = 48/184 (26.09%), Postives = 88/184 (47.83%), Query Frame = 3
Query:   57 NTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLG-----KNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            N + +N+V S +    Q     +L++K+  +G  PD  T+N LI+ F + GKV EA K FE + +    P +    SL++        KNG     H+  K   E+    D+   ++LI+ + K      A R+FD+   +   P  V +N+++    + G    A++++  L+++ + P   T
Sbjct:  297 NLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHV-IKAAAER----DIFVLTSLIDMYMKCGLSSWARRIFDRFEPKPKDP--VFWNVMISGYGKHGECESAIEIFELLREEKVEPSLAT 473          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 49/181 (27.07%), Postives = 88/181 (48.62%), Query Frame = 3
Query:    9 EAMDLLDKIHEKGIDPNTVMYNTVFSA---LGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAE-GCSPNIVTYNILLDCLERSGRTAEA 539
            EA+ L  ++    ++P+ V      SA   LG L+Q   +H    K +      D     +LI  + + G++ EA++VF+ ++    K  + ++ +LI+    +G+  EA  +F EMQ+ G  P+V+T++ ++     T  VE    +F  M  +    P I  Y  ++D L R+G   EA
Sbjct:  230 EALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRI---RMDSVLGCVLIDMYAKCGEMEEALEVFKNIK----KKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEA 403          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 42/180 (23.33%), Postives = 95/180 (52.78%), Query Frame = 3
Query:   57 NTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSN-CKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            + ++  ++     K  ++S+   ++  M Q     ++  +N++I  + R G+V +A   F+++   N  +PD+I+    IN L  +  L+   +    M+ +GF P +V  + LI+ +G+  +++ A  +FD+M  +    N++++N ++    ++G+   A++L+ +L    L PDS T
Sbjct:  266 DVMVMTSILDMYSKYGEVSYAERIFNGMIQR----NIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITS---INLLPASAILEGRTIHGYAMR-RGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEK----NVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTT 433          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP206_ARATH (Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 50/195 (25.64%), Postives = 99/195 (50.77%), Query Frame = 3
Query:   30 KIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEEL-ENSNCK-PDIISYNSLI---NCLGKNGNLDEAHMRFKEMQEKGF--SPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            K++++    NTV  NT+ S   K   +S   DL+  M    P   V T+ IL+  + R    +EA K+F ++  +S+C  PD +++ +L+   N       + + H    ++   GF  +P +   + L++ + +  ++++AC LF+++  +    + VT+N L+   E+ G   E++ L+ K++Q G  P   T
Sbjct:   69 KVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAM----PDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKL---GFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEK----DSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFT 252          

HSP 2 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 51/193 (26.42%), Postives = 87/193 (45.08%), Query Frame = 3
Query:   15 MDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKML-AEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSI 590
            + L  K+    +  +   + TV  A      +     L+  + + G   +VF+ + L+  + + G + +A++VFEE+ + N     +S+N+LI+    NG+ + A   F +M E G  PD V+   ++        VE     F  M    G +P    Y  +LD L R+GR AEA  L   + +    PD I
Sbjct:  437 LKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNA----VSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKL---MDEMPFEPDEI 622          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP200_ARATH (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 42/181 (23.20%), Postives = 89/181 (49.17%), Query Frame = 3
Query:   57 NTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSP--NIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            + V +N++     K   I    +L+ +M    P  +  ++N +I+ F R G+  +A+ +F E++  + KPD  +  SL+N     G  ++     + +    F  + +  + LI+ + K   +E    +F+      C+P   +  +N ++  L  +G    A+DL+++L++ GL PDS++
Sbjct:  191 DVVAWNSMIMGFAKCGLIDQAQNLFDEM----PQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFE------CAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVS 361          
BLAST of CX288860 vs. ExPASy Swiss-Prot
Match: PP261_ARATH (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 42/196 (21.43%), Postives = 99/196 (50.51%), Query Frame = 3
Query:    6 AEAMDLLDKIHEKGIDPNTVMYNTVFSALGKLKQISHLHDLYQKMKQDGPSPDVFTYNILIASFGRAGKVNEAIKVFEELENSNCKPDIISYNSLINCLGKNGNLDEAHMRFKEMQEKGFSPDVVTYSTLIECFGKTDKVEMACRLFDKMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSIT 593
            ++A +L +K+ E+    NTV ++T+     K   +     ++ KM    P+ +V T+ I+IA +   G + EA ++ +++  S  K D  +  S++    ++G L         ++      +    + L++ + K   ++ A  +F+ +  +    ++V++N +L  L   G   EA++L+++++++G+ PD +T
Sbjct:  233 SKAFELFEKMPER----NTVSWSTMVMGYSKAGDMEMARVMFDKMPL--PAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKK----DLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVT 418          
The following BLAST results are available for this feature:
BLAST of CX288860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 260
Match NameE-valueIdentityDescription
PP272_ARATH3.578e-1125.26Pentatricopeptide repeat-containing protein At3g49... [more]
PP249_ARATH3.578e-1127.49Pentatricopeptide repeat-containing protein At3g22... [more]
PP237_ARATH3.578e-1127.42Pentatricopeptide repeat-containing protein At3g16... [more]
PP191_ARATH4.674e-1124.14Pentatricopeptide repeat-containing protein At2g37... [more]
PP144_ARATH4.674e-1126.09Pentatricopeptide repeat-containing protein At2g02... [more]
PP449_ARATH6.104e-1127.07Pentatricopeptide repeat-containing protein At5g66... [more]
PP350_ARATH6.104e-1123.33Pentatricopeptide repeat-containing protein At4g35... [more]
PP206_ARATH6.104e-1125.64Putative pentatricopeptide repeat-containing prote... [more]
PP200_ARATH6.104e-1123.20Pentatricopeptide repeat-containing protein At2g42... [more]
PP261_ARATH7.972e-1121.43Pentatricopeptide repeat-containing protein At3g29... [more]

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Properties
Property NameValue
Genbank descriptionC02006C04SK IF1 Citrus clementina cDNA clone C02006C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288860 ID=CX288860; Name=CX288860; organism=Citrus clementina; type=EST; length=595bp
AGACAGCAGAGGCTATGGACCTGCTTGATAAGATTCATGAAAAAGGAATA
GACCCCAATACAGTCATGTATAACACAGTATTTTCAGCTCTTGGCAAGTT
GAAGCAAATATCACATCTGCATGATCTTTACCAAAAAATGAAGCAAGATG
GCCCTTCTCCAGATGTATTTACCTACAATATCCTGATTGCAAGCTTTGGT
AGGGCAGGAAAGGTTAATGAGGCCATTAAAGTTTTTGAAGAACTAGAGAA
TAGCAATTGTAAACCTGATATTATCTCATATAATTCATTGATCAATTGTC
TTGGGAAGAATGGTAATCTTGATGAAGCTCACATGAGGTTTAAAGAGATG
CAGGAGAAAGGGTTCAGTCCTGATGTTGTTACATATAGTACGCTAATTGA
ATGCTTTGGCAAGACGGACAAAGTTGAGATGGCATGTAGATTGTTTGACA
AGATGCTTGCTGAAGGATGCTCCCCCAACATTGTGACATACAATATCTTA
CTTGACTGTCTTGAAAGAAGTGGGAGAACTGCTGAAGCAGTGGATCTTTA
TGCAAAACTTAAGCAACAGGGGTTAACACCTGATTCAATCACATA
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