CX288862

Overview
NameCX288862
Unique NameCX288862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288862 vs. ExPASy Swiss-Prot
Match: HEXB_PIG (Beta-hexosaminidase subunit beta OS=Sus scrofa GN=HEXB PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.956e-14
Identity = 39/106 (36.79%), Postives = 55/106 (51.89%), Query Frame = 3
Query:    6 WYLDHLDV--PWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAERLWSRREAISSGNITLTALPRLHYFRCLLNRRGVQAAPVLNKY 317
            WYLD +     W   Y  EP +       ++ VLGGE C+WGE  D +++   +WPRA+A  ERLWS ++     +    A  RL   RC + RRG+ A P+   Y
Sbjct:  423 WYLDLISYGQDWKNYYEVEPQDFPGSDKERKRVLGGEACLWGEYVDATNLTPRLWPRASAVGERLWSHKDVRDIHD----AYSRLTIHRCRMVRRGIAAEPLFTGY 524          
BLAST of CX288862 vs. ExPASy Swiss-Prot
Match: HEXA1_DICDI (Beta-hexosaminidase subunit A1 OS=Dictyostelium discoideum GN=hexa1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.336e-14
Identity = 43/114 (37.72%), Postives = 59/114 (51.75%), Query Frame = 3
Query:    6 WYLDHLDVP----------WDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAERLWSRREAISSGNITLTALPRLHYFRCLLNRRGVQAAPVLNKY 317
            WYLD  +            W + Y A+P   IS  +N E ++GGE  MW E  +  +    +WPRA   AERLWS +    S N    ALPR+ +F C L+RRG+Q+ P+   Y
Sbjct:  397 WYLDKQNPDNNIHYEWQDTWQDFYAADPTNNIS--TNAENIIGGEATMWAEQINQVNWDVRVWPRAIGIAERLWSAQ----SVNSVSLALPRIGHFTCDLSRRGIQSGPLFPDY 504          
BLAST of CX288862 vs. ExPASy Swiss-Prot
Match: HEXB_HUMAN (Beta-hexosaminidase subunit beta OS=Homo sapiens GN=HEXB PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 5.690e-14
Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 3
Query:    6 WYLDHLDV--PWDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAERLWSRREAISSGNITLTALPRLHYFRCLLNRRGVQAAPVLNKY 317
            WYLD +     W + Y  EPL+       ++L +GGE C+WGE  D +++   +WPRA+A  ERLWS ++     +    A  RL   RC +  RG+ A P+   Y
Sbjct:  449 WYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDD----AYDRLTRHRCRMVERGIAAQPLYAGY 550          
BLAST of CX288862 vs. ExPASy Swiss-Prot
Match: HEXA2_DICDI (Beta-hexosaminidase subunit A2 OS=Dictyostelium discoideum GN=hexa2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.824e-13
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 3
Query:   33 WDEVYTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAERLWSRREAISSGNITLTALPRLHYFRCLLNRRGVQAAPVLNKYAREP 329
            W++ Y ++P   I+  SN E +LGGE  M+GE   T +    +WPRA   +ERLWS  E     NITL ALPR+  F C ++RRG+ + P+   +   P
Sbjct:  424 WEDFYASDPRLNIT--SNAENILGGEATMFGEQVSTVNWDARVWPRAIGISERLWSATEI---NNITL-ALPRIGQFSCDMSRRGISSGPLFPDFCSLP 516          
BLAST of CX288862 vs. ExPASy Swiss-Prot
Match: HEXA_CAEBR (Beta-hexosaminidase A OS=Caenorhabditis briggsae GN=hex-1 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.326e-12
Identity = 41/112 (36.61%), Postives = 55/112 (49.11%), Query Frame = 3
Query:    6 WYLDHLD--VPW-DEV----------YTAEPLEGISDPSNQELVLGGEVCMWGETADTSDIHQTIWPRAAAAAERLWSRREAISSGNITLTALPRLHYFRCLLNRRGVQAAP 302
            WYL+++     W DE+          Y  +P       + + LVLGG   +WGE  D ++I   +WPRA+AAAERLWS  E          A PR+H  RC L  RG +  P
Sbjct:  423 WYLNYIKYGADWRDEIRGTAPSNSRYYYCDPTSFNGTDTQKNLVLGGIAAIWGELVDNTNIEARLWPRASAAAERLWSPAEKTQKAE---NAWPRMHELRCRLVSRGYRIQP 531          
BLAST of CX288862 vs. ExPASy Swiss-Prot
Match: HEXA_CAEEL (Beta-hexosaminidase A OS=Caenorhabditis elegans GN=hex-1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.085e-12
Identity = 43/112 (38.39%), Postives = 56/112 (50.00%), Query Frame = 3
Query:    6 WYLDHLD--VPW-DEVYTAEPLEG---ISDPSN-------QELVLGGEVCMWGETADTSDIHQTIWPRAAAAAERLWSRREAISSGNITLTALPRLHYFRCLLNRRGVQAAP 302
            WYL+++     W DE+    P        DP+N       +ELV GG   +WGE  D ++I   +WPRA+AAAERLWS  E          A PR+H  RC L  RG +  P
Sbjct:  426 WYLNYIKYGADWRDEIRGTAPSNSRYYYCDPTNFNGTVAQKELVWGGIAAIWGELVDNTNIEARLWPRASAAAERLWSPAEKTQRAE---DAWPRMHELRCRLVSRGYRIQP 534          
The following BLAST results are available for this feature:
BLAST of CX288862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
HEXB_PIG1.956e-1436.79Beta-hexosaminidase subunit beta OS=Sus scrofa GN=... [more]
HEXA1_DICDI3.336e-1437.72Beta-hexosaminidase subunit A1 OS=Dictyostelium di... [more]
HEXB_HUMAN5.690e-1435.85Beta-hexosaminidase subunit beta OS=Homo sapiens G... [more]
HEXA2_DICDI2.824e-1340.40Beta-hexosaminidase subunit A2 OS=Dictyostelium di... [more]
HEXA_CAEBR5.326e-1236.61Beta-hexosaminidase A OS=Caenorhabditis briggsae G... [more]
HEXA_CAEEL9.085e-1238.39Beta-hexosaminidase A OS=Caenorhabditis elegans GN... [more]

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Properties
Property NameValue
Genbank descriptionC02006C06SK IF1 Citrus clementina cDNA clone C02006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288862 ID=CX288862; Name=CX288862; organism=Citrus clementina; type=EST; length=520bp
GTTTTTGGTATCTTGACCATCTTGATGTTCCTTGGGATGAAGTCTACACT
GCTGAACCGCTAGAGGGAATATCCGATCCTTCAAACCAAGAGCTTGTGCT
TGGAGGGGAAGTTTGCATGTGGGGTGAGACAGCCGATACCTCAGATATTC
ACCAAACAATATGGCCTCGCGCTGCTGCAGCTGCAGAGCGCTTGTGGAGT
AGGAGGGAGGCGATTTCCTCTGGAAATATTACATTAACTGCATTACCACG
ACTGCACTACTTCAGATGCCTTTTAAATAGGCGTGGGGTTCAAGCTGCTC
CAGTCTTGAATAAGTATGCGAGAGAACCTCCAATTGGCCCTGGATCATGC
TATGTGCAATAAATCTTTCCTTTGTCAGATTGGTCCAAGTTTATGGATCT
GAAGCTGCATTCTGCATGCCTACACGCGAGGAATATGTGTGTTCACAGCA
ACCCGGGCCTGTACTGTAGTCGATTGGCGTTAATGTTCGAGTAAAATGCA
TGTCAATCTGGCCACAGGAT
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