CX288865

Overview
NameCX288865
Unique NameCX288865
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288865 vs. ExPASy Swiss-Prot
Match: AAT_STRGR (Probable aspartate aminotransferase (Fragment) OS=Streptomyces griseus GN=aspC PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.312e-11
Identity = 41/140 (29.29%), Postives = 69/140 (49.29%), Query Frame = 3
Query:   66 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEV 485
            L+  IA       G+  D   I +T+G   A++     ++    D ++ P P +  Y  SI L GG  V    DE TG+ +      +QLEAA+ +    + ++ ++P NPTG V +E +  AI  +  + GL ++ DE+
Sbjct:   81 LKAAIAEKTLRDSGYEVDAGQILVTNGGKQAIYEAFAAIL-DPGDEVIVPAPYWTTYPESIRLAGGVPVEVVADETTGYRVSV----EQLEAARTE--KTKVVLFVSPSNPTGAVYSEADAEAIGRWAVEHGLWVMTDEI 213          
BLAST of CX288865 vs. ExPASy Swiss-Prot
Match: 1A12_CUCMA (1-aminocyclopropane-1-carboxylate synthase CMA101 OS=Cucurbita maxima GN=ACS2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.312e-11
Identity = 35/130 (26.92%), Postives = 67/130 (51.54%), Query Frame = 3
Query:  117 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVY 503
            + N+I LT GA+ A   +M  L  +  D  L P P YP +   +    G  +VP +   + G+ +  S +++  + A+ + + V+ ++V NP NP G  +  +    + +F   +G+ L++DE+Y   V+
Sbjct:  110 EANNIVLTAGATSANETLMFCLAEA-GDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITQSALEQAYKDAQTRNLRVKGVLVTNPSNPLGTTMNRDELNLVFDFITSKGIHLISDEIYSGTVF 238          
BLAST of CX288865 vs. ExPASy Swiss-Prot
Match: 1A11_ORYSJ (1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. japonica GN=ACC1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.312e-11
Identity = 39/158 (24.68%), Postives = 73/158 (46.20%), Query Frame = 3
Query:   24 RATGAYSHSQGIKGLRDTIAAGIEARDGFPA--DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH-GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVY 488
            R    +    G+   ++ +A  +  + G+    DP++I LT GA+ A   +M   +    D  L P P YP +   +    G  +VP +   A G+ +    +      A+ + + V+ +++ NP NP G      +   IV+F   +G+ L++DE+Y
Sbjct:   89 RELALFQDYHGLPAFKNALARFMSEQRGYKVVFDPSNIVLTAGATSANEALM-FCLADHGDAFLIPTPYYPGFDRDLKWRTGAEIVPVHCASANGFRVTRPALDDAYRRAQKRRLRVKGVLITNPSNPLGTASPRADLETIVDFVAAKGIHLISDEIY 245          
BLAST of CX288865 vs. ExPASy Swiss-Prot
Match: 1A11_ORYSI (1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. indica GN=ACC1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.312e-11
Identity = 39/158 (24.68%), Postives = 73/158 (46.20%), Query Frame = 3
Query:   24 RATGAYSHSQGIKGLRDTIAAGIEARDGFPA--DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH-GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVY 488
            R    +    G+   ++ +A  +  + G+    DP++I LT GA+ A   +M   +    D  L P P YP +   +    G  +VP +   A G+ +    +      A+ + + V+ +++ NP NP G      +   IV+F   +G+ L++DE+Y
Sbjct:   89 RELALFQDYHGLPAFKNALARFMSEQRGYKVVFDPSNIVLTAGATSANEALM-FCLADHGDAFLIPTPYYPGFDRDLKWRTGAEIVPVHCASANGFRVTRPALDDAYRRAQKRRLRVKGVLITNPSNPLGTASPRADLETIVDFVAAKGIHLISDEIY 245          
The following BLAST results are available for this feature:
BLAST of CX288865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
AAT_STRGR4.312e-1129.29Probable aspartate aminotransferase (Fragment) OS=... [more]
1A12_CUCMA4.312e-1126.921-aminocyclopropane-1-carboxylate synthase CMA101 ... [more]
1A11_ORYSJ4.312e-1124.681-aminocyclopropane-1-carboxylate synthase 1 OS=Or... [more]
1A11_ORYSI4.312e-1124.681-aminocyclopropane-1-carboxylate synthase 1 OS=Or... [more]

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Properties
Property NameValue
Genbank descriptionC02006C09SK IF1 Citrus clementina cDNA clone C02006C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288865 ID=CX288865; Name=CX288865; organism=Citrus clementina; type=EST; length=506bp
AGATACTGGATCAAATTCCTGGGCGAGCAACTGGGGCTTACAGTCATAGT
CAGGGTATCAAGGGACTGCGTGATACAATCGCTGCTGGAATTGAGGCTCG
TGATGGTTTTCCTGCTGATCCAAATGATATTTTCTTGACAGATGGTGCAA
GTCCTGCTGTCCACATGATGATGCAGTTATTGATAAGATCAGAGAACGAT
GGAATTCTCTGTCCGATTCCTCAGTACCCTTTATACTCTGCTTCAATTGC
TCTCCATGGTGGGACCTTGGTGCCTTACTACCTAGATGAAGCAACAGGAT
GGGGATTGGAAACTTCGGAGGTTAAGAAGCAATTGGAGGCCGCCAAGGCC
AAAGGTATTACCGTTAGGGCCTTGGTTGTAATAAATCCAGGCAATCCAAC
TGGACAGGTTCTTGCTGAAGAAAACCAGCGTGCAATTGTGGAGTTCTGCA
AAAAGGAGGGTCTTGTTCTTCTTGCAGATGAGGTATACCAGGAAAATGTT
TATGTG
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