CX288872

Overview
NameCX288872
Unique NameCX288872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14378 contig Ccv1_Contig14378:70..557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288872 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.328e-27
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 3
Query:   36 KLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 368
            K+   ++LCM+V  P  A+A+TCGQVT  LAPC+ YL+  GP+   CC GV+ L  +A+TT DR+TAC CLK AA +I  ++ N A G+P  C V+IPYKIS STDCS V+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTAGLAPCLPYLQGRGPLG-GCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CX288872 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.734e-27
Identity = 61/111 (54.95%), Postives = 76/111 (68.47%), Query Frame = 3
Query:   36 KLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 368
            K+   ++LCM+V  P  A+A+TCGQVT +LAPC+ YL + GP+   CC GV+ L   A+TT DRQTAC CLK AA S   L+   A  LP  C V+IPYKIS STDCSKV+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTSTLAPCLPYLMNRGPLG-GCCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CX288872 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.957e-27
Identity = 59/113 (52.21%), Postives = 75/113 (66.37%), Query Frame = 3
Query:   27 AALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 365
            A +K   ALV+CM+V  PL A+AITCG V   LAPCI YL+        CC G++SLN+AA +  DR+TAC CLK AA SI  +N   A  LPR CGVS+PY IS +T+C+ +
Sbjct:    5 AFVKFTCALVMCMMVAAPL-AEAITCGLVASKLAPCIGYLQGAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CX288872 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3
Query:   30 ALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIP-VPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 365
            A+ +V+A+V+ +  T   S  AI+CGQV+ ++A C+ Y R  G  P   CC+GVRSLN+AARTT DR+ ACNCLK AA  I  LN  NA  +P  CGVS+PY IS STDCS+V
Sbjct:    7 AIAVVAAVVVVLAAT--TSEAAISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CX288872 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.605e-27
Identity = 58/111 (52.25%), Postives = 75/111 (67.57%), Query Frame = 3
Query:   36 KLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 368
            K+   +V CM+V  P  A++++CG+VT  LAPC+ YL   GP+   CC GV+ L  AA+T  DR+TAC CLK AA SI  ++   A GLP  CGV+IPYKIS STDCS V+
Sbjct:    6 KIACFVVFCMVVVAP-HAESLSCGEVTSGLAPCLPYLEGRGPLG-GCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CX288872 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.605e-27
Identity = 60/111 (54.05%), Postives = 76/111 (68.47%), Query Frame = 3
Query:   36 KLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 368
            K+   ++LCM+V  P  A+A+TCGQVT +LAPC+ YL + GP+   CC GV+ L   A+TT DRQ AC CLK AA S  +L+   A  LP  C V+IPYKIS STDCSKV+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTSTLAPCLPYLMNRGPLG-GCCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of CX288872 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.124e-26
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 3
Query:   30 ALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 368
            AL+  +  VL + +   + A AITCG V  SL+PC+ YL  GG +P PCC GV+ LN  A+TTPDRQ AC CL+ AA  +   NP+ A GLP  CGVSIPY IS ST+C+ ++
Sbjct:    4 ALRFFTCFVLTVFIVASVDA-AITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAKGV---NPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CX288872 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.468e-26
Identity = 59/116 (50.86%), Postives = 74/116 (63.79%), Query Frame = 3
Query:   21 QMAALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIP-VPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 365
            ++A    V A    +++    S  A+TCGQV+ ++ PC+ Y R  G  P   CC+GVRSLN+AARTT DR+ ACNCLK AA  I  LN   A  +P  CGVSIPY IS STDCS+V
Sbjct:    6 KLAVAIAVVAAAAAVVLAATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CX288872 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.577e-26
Identity = 60/115 (52.17%), Postives = 70/115 (60.87%), Query Frame = 3
Query:   24 MAALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 368
            MA    V  L+L   + G  +A AITCGQV   L  C+ Y R GG IP  CC GVR+LN  A+TTPDRQTACNCLK        LN     G+P  CGV+IPY I + TDC+KVR
Sbjct:    1 MARSSAVCFLLLLAFLIG--TASAITCGQVDSDLTSCLGYARKGGVIPPGCCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CX288872 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.623e-25
Identity = 49/90 (54.44%), Postives = 68/90 (75.56%), Query Frame = 3
Query:   96 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKV 365
            +TCGQV G+LA CI +L+ GG +P  CC GV+++  ++RTT DR+  C+CLK AAG++  +NPNNA  LP  CGV+IPYKIS ST+C+ +
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
The following BLAST results are available for this feature:
BLAST of CX288872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP1_SOLPN1.328e-2753.15Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP2_SOLPN1.734e-2754.95Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP_BETVU2.957e-2752.21Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP1_SORBI6.588e-2753.98Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP2_SOLLC8.605e-2752.25Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP2_SOLCI8.605e-2754.05Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP4_ARATH1.124e-2651.33Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP2_SORBI1.468e-2650.86Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
SCA_LILLO5.577e-2652.17Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP1_PHAAU1.623e-2554.44Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]

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Properties
Property NameValue
Genbank descriptionC02006D05SK IF1 Citrus clementina cDNA clone C02006D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288872 ID=CX288872; Name=CX288872; organism=Citrus clementina; type=EST; length=488bp
GAAAATCTCAGGAGAAATCTCAAATGGCTGCCCTCAAGCTTGTTTCAGCT
TTGGTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAAC
ATGTGGGCAGGTGACTGGCTCATTGGCACCATGCATCGTTTACTTGAGAT
CGGGCGGCCCTATACCTGTGCCATGCTGCAACGGCGTCAGGTCTCTCAAC
GCTGCCGCCAGAACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAA
GCAAGCCGCCGGATCAATCCCTAACCTCAACCCTAATAATGCTGTTGGTC
TTCCACGAGCTTGTGGAGTCAGCATTCCTTACAAGATCAGCATCTCCACT
GACTGCTCTAAGGTCCGGTGAACAGGAATCTGGGCTGTTGATTTTCATAT
TTAAGTTGACGGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGT
CCGAATTATGAGTCTCTCTCTACACTTTGTACTGCGAG
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