CX288894

Overview
NameCX288894
Unique NameCX288894
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288894 vs. ExPASy Swiss-Prot
Match: Y3710_CHRVO (Putative phosphotransferase CV_3710 OS=Chromobacterium violaceum GN=CV_3710 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 3
Query:  222 EEYFRRIEAIEFTIKQDDGALPQNLHKADIILSGVSRTGKTPLSIYLA-QKGYKVANVPI 398
            E+Y  RIEA+ F++  DDG   ++LH+AD+IL GVSR+GKTP  +YLA Q G + AN P+
Sbjct:  121 EKYDHRIEAVNFSLNHDDGVKLKDLHEADVILVGVSRSGKTPTCLYLALQYGIRAANYPL 180          
BLAST of CX288894 vs. ExPASy Swiss-Prot
Match: Y2298_SHEFN (Putative phosphotransferase Sfri_2298 OS=Shewanella frigidimarina (strain NCIMB 400) GN=Sfri_2298 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 3
Query:  123 DVLGPITEAIASHIGVSPSGLPRGAPGRNFPLGEEYFRRIEAIEFTIKQDDGALPQNLHKADIILSGVSRTGKTPLSIYLA-QKGYKVANVP 395
            D L      +  H+GV    L     G++      Y  RI+AI +T++ DDG   +++ KADIIL GVSR GKTP S+YL+ Q G K AN P
Sbjct:   87 DFLNTFVAPLEQHLGVQAKPLLHRTHGKS---NHGYETRIDAINYTMENDDGQTMKHMDKADIILLGVSRCGKTPSSLYLSMQFGIKAANYP 175          
BLAST of CX288894 vs. ExPASy Swiss-Prot
Match: Y6516_VIBHB (Putative phosphotransferase VIBHAR_06516 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=VIBHAR_06516 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  123 DVLGPITEAIASHIGVSPSGLPRGAPGRNFPLGEE-YFRRIEAIEFTIKQDDGALPQNLHKADIILSGVSRTGKTPLSIYLA-QKGYKVANVPIV 401
            DVL  I + +   I + P   P+    R+     + YF RI AIE+T+  DDG   + L +A+IIL GVSR+GKTP S+Y+A Q G +V N P +
Sbjct:   92 DVLESIVQKVQDDIQMEPQ--PKMQRSRSVSKDSDTYFDRIAAIEYTLAHDDGITLKGLDEANIILLGVSRSGKTPTSLYMAMQFGLRVVNYPFI 184          
BLAST of CX288894 vs. ExPASy Swiss-Prot
Match: Y1815_VARPS (Putative phosphotransferase Vapar_1815 OS=Variovorax paradoxus (strain S110) GN=Vapar_1815 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 3
Query:   54 TLADPSMAESAKKACELWGILSTDVLGPITEAIASHIGVSPSGLPRGAPGRNFPLGEEYFRRIEAIEFTIKQDDGALPQNLHKADIILSGVSRTGKTPLSIYLA-QKGYKVANVPIV 401
            TLA+  + E  +  C+  G+L  D+ G     +   + V  +   R     +    +EY  RI AI+F++  DDG   ++L  AD+IL GVSR+GKTP S+YLA Q G K AN P++
Sbjct:   69 TLANMEVLEVIETGCK--GML-LDMFGTFVRPLEIELAVKSNH--RIGRFSDVSKSKEYDARIAAIDFSLAHDDGQSNRDLEGADVILVGVSRSGKTPTSLYLAMQHGLKAANYPLI 180          
BLAST of CX288894 vs. ExPASy Swiss-Prot
Match: Y4515_VIBVY (Putative phosphotransferase VVA0515 OS=Vibrio vulnificus (strain YJ016) GN=VVA0515 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  123 DVLGPITEAIASHIGVSPSGLPRGAPGRNFPLGEE-YFRRIEAIEFTIKQDDGALPQNLHKADIILSGVSRTGKTPLSIYLA-QKGYKVANVPIV 401
            DVL  I + +   I + P+  P+    R+     + YF RI AIE+T+  DDG   + L  ADIIL GVSR+GKTP S+Y+A Q G +V N P +
Sbjct:   92 DVLESIVQRVKDDIQMEPT--PKLQRSRSVGKDTDTYFDRIAAIEYTLAHDDGISLKGLELADIILLGVSRSGKTPTSLYMAMQFGLRVVNYPYI 184          
BLAST of CX288894 vs. ExPASy Swiss-Prot
Match: Y4006_VIBVU (Putative phosphotransferase VV2_0006 OS=Vibrio vulnificus GN=VV2_0006 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  123 DVLGPITEAIASHIGVSPSGLPRGAPGRNFPLGEE-YFRRIEAIEFTIKQDDGALPQNLHKADIILSGVSRTGKTPLSIYLA-QKGYKVANVPIV 401
            DVL  I + +   I + P+  P+    R+     + YF RI AIE+T+  DDG   + L  ADIIL GVSR+GKTP S+Y+A Q G +V N P +
Sbjct:   92 DVLESIVQRVKDDIQMEPT--PKLQRSRSVGKDTDTYFDRIAAIEYTLAHDDGISLKGLELADIILLGVSRSGKTPTSLYMAMQFGLRVVNYPYI 184          
BLAST of CX288894 vs. ExPASy Swiss-Prot
Match: Y2645_SHEON (Putative phosphotransferase SO_2645 OS=Shewanella oneidensis GN=SO_2645 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 3
Query:  114 LSTDVLGPITEAIASHIGVSPSGLPRGAPGRNFPLGEEYFRRIEAIEFTIKQDDGALPQNLHKADIILSGVSRTGKTPLSIYLA-QKGYKVANVP 395
            L  D L      +  H+GVS S +     G+     + Y  RI+AI F +  DDG   +++ +AD+IL GVSR GKTP S+YL+ Q G K AN P
Sbjct:   84 LDYDFLNTFVAPLEQHLGVSASPVLHRTHGK---ANQGYEARIDAINFAMDNDDGQTMKHMDQADLILLGVSRCGKTPSSLYLSMQFGIKAANYP 175          
BLAST of CX288894 vs. ExPASy Swiss-Prot
Match: Y1870_SHESH (Putative phosphotransferase Ssed_1870 OS=Shewanella sediminis (strain HAW-EB3) GN=Ssed_1870 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 3
Query:  114 LSTDVLGPITEAIASHIGVSPSGLPRGAPGRNFPLGEEYFRRIEAIEFTIKQDDGALPQNLHKADIILSGVSRTGKTPLSIYLA-QKGYKVANVPIV 401
            L  D L      +   +G+  S +     G+     E Y  RI+AI +T+  DDG   +N+ KAD++L GVSR GKTP S+YL+ Q G K AN P V
Sbjct:   84 LDYDFLNTFVAPLELQLGMKASPVVHRTHGK---ANEGYEARIDAINYTMDNDDGQTLKNIDKADLVLLGVSRCGKTPSSLYLSMQFGIKAANYPFV 177          
The following BLAST results are available for this feature:
BLAST of CX288894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
Y3710_CHRVO4.396e-1153.33Putative phosphotransferase CV_3710 OS=Chromobacte... [more]
Y2298_SHEFN4.396e-1142.39Putative phosphotransferase Sfri_2298 OS=Shewanell... [more]
Y6516_VIBHB7.498e-1142.11Putative phosphotransferase VIBHAR_06516 OS=Vibrio... [more]
Y1815_VARPS7.498e-1137.61Putative phosphotransferase Vapar_1815 OS=Variovor... [more]
Y4515_VIBVY9.792e-1143.16Putative phosphotransferase VVA0515 OS=Vibrio vuln... [more]
Y4006_VIBVU9.792e-1143.16Putative phosphotransferase VV2_0006 OS=Vibrio vul... [more]
Y2645_SHEON9.792e-1141.05Putative phosphotransferase SO_2645 OS=Shewanella ... [more]
Y1870_SHESH9.792e-1140.21Putative phosphotransferase Ssed_1870 OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionC02006F04SK IF1 Citrus clementina cDNA clone C02006F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288894 ID=CX288894; Name=CX288894; organism=Citrus clementina; type=EST; length=413bp
AGTTGATGGTGATACTAAAGCAAGCGGCCAAGGAAGGGGCAATGCTTGTT
TACACCTTAGCCGATCCTTCCATGGCAGAGTCTGCTAAAAAGGCCTGCGA
GCTTTGGGGTATTCTGTCCACTGACGTATTGGGACCAATTACGGAGGCAA
TTGCATCCCATATAGGCGTCTCACCTTCTGGCCTTCCCCGAGGTGCTCCG
GGCCGAAATTTTCCTCTTGGTGAGGAGTACTTTCGTCGCATAGAGGCTAT
TGAATTTACCATTAAGCAAGATGATGGTGCCCTTCCACAAAATTTGCACA
AAGCCGACATTATTCTATCAGGTGTTTCTCGTACTGGAAAAACACCGTTA
TCCATCTATTTAGCTCAGAAGGGATACAAAGTGGCAAATGTCCCAATTGT
GATGGGTGTAGAA
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