CX288896

Overview
NameCX288896
Unique NameCX288896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 3.598e-41
Identity = 82/161 (50.93%), Postives = 112/161 (69.57%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNV 485
            IIGD  VGKS LL ++   +F      TIGVEF T+ +E+ G+++K QIWDTAGQERFRAVT +YYRGA GAL+VYDITRR+T++ +S WL + +  ++     +L+GNK DLE+ R+V+ EE K  AE  GL F+E SA    NV++AF    ++IY N+
Sbjct:   16 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 176          
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 4.700e-41
Identity = 81/162 (50.00%), Postives = 119/162 (73.46%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVS 488
            +IGDS VGKS LL R+A + +     +TIGV+F+ +++E DGK +K QIWDTAGQERFR +TS+YYRGA G ++VYD+T + +F+++ +WL+E+  ++   V ++LVGNKCDL   R VS E GK+LA+  G+ F+ETSA D+TNV+ AF  +  EI + ++
Sbjct:   13 LIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMA 174          
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 4.700e-41
Identity = 76/157 (48.41%), Postives = 114/157 (72.61%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREI 473
            +IGDS VGK+  L R++ + FN    +TIG++F+ +++E+DGK +K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   +F++I  W+  ++ H+   V +M++GNKCD    R VS E+G+ LA + G+ FMETSA  + N++NAF  + R+I
Sbjct:   13 LIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLARDI 169          
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 6.138e-41
Identity = 80/162 (49.38%), Postives = 119/162 (73.46%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVS 488
            +IG+S VGKS LL R++ + +     +TIGV+F+ +++E+DGK VK QIWDTAGQERFR +TS+YYRG+ G +IVYD+T + +F+ +  WL E+  ++ +TV ++LVGNKCDL+  R V  +  K  A+A  + F+ETSALDSTNV++AF  + R+I  ++S
Sbjct:   13 LIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174          
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 6.138e-41
Identity = 76/157 (48.41%), Postives = 114/157 (72.61%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREI 473
            +IGDS VGKS LL R++ + F P    TIG++F+ +++E++GK +K QIWDTAGQERFR +T+AYYRGA+G L+VYD+T   +F +I  W+  ++ H+  +V +ML+GNKCD+   + V +  GKSLA+  G+ F+ETSA +S NV+ AF  + ++I
Sbjct:   20 LIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDI 176          
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.046e-40
Identity = 77/157 (49.04%), Postives = 113/157 (71.97%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREI 473
            +IGDS VGK+ +L R++ + FN    +TIG++F+ +++E+DGK +K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   +FD+I  W+  ++ H+   V +M++GNK D+   R VS E G+ LA   G+ FMETSA  + NV+NAF  + R+I
Sbjct:   13 LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169          
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 3.046e-40
Identity = 79/161 (49.07%), Postives = 112/161 (69.57%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNV 485
            IIGD+ VGKS LL ++    F P    TIGVEF  + + ID K +K QIWDTAGQE FR++T +YYRG+ GAL+VYDITRR TF+ ++ WL + ++++++ +  +L+GNK D+ES R VS EEG+  A+  GL F+ETSA  ++NV+ AF     +IY  +
Sbjct:   10 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKI 170          
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.979e-40
Identity = 75/157 (47.77%), Postives = 111/157 (70.70%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREI 473
            +IGDS VGK+ L+ R+A + FN    +TIG++F+ +++EI+GK +K Q+WDTAGQERF+ +T+AYYRGA+G ++VYDIT   +F++I  W+  +K ++   V R+L+GNKCD+E+ R V  E+   LA   G+ F ETSA  S NV  AF  + R+I
Sbjct:   13 LIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDI 169          
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.979e-40
Identity = 74/157 (47.13%), Postives = 112/157 (71.34%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREI 473
            +IGDS VGK+ L+ R+A + FN    +TIG++F+ ++++I+GK++K Q+WDTAGQERF+ +T+AYYRGA+G ++VYDIT   +F++I  W+  +K ++   V R+L+GNKCD+E+ R V  E+   LA   G+ F ETSA  S NV  AF  + R+I
Sbjct:   13 LIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.979e-40
Identity = 74/157 (47.13%), Postives = 112/157 (71.34%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREI 473
            +IGDS VGK+ L+ R+A + FN    +TIG++F+ ++++I+GK++K Q+WDTAGQERF+ +T+AYYRGA+G ++VYDIT   +F++I  W+  +K ++   V R+L+GNKCD+E+ R V  E+   LA   G+ F ETSA  S NV  AF  + R+I
Sbjct:   13 LIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
The following BLAST results are available for this feature:
BLAST of CX288896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB14_CHICK3.598e-4150.93Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RIC1_ORYSJ4.700e-4150.00Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB8A_CHICK4.700e-4148.41Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
YPT1_YEAST6.138e-4149.38GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB8A_DICDI6.138e-4148.41Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB8A_PONAB3.046e-4049.04Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB2A_DICDI3.046e-4049.07Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB13_MESAU3.979e-4047.77Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB13_HUMAN3.979e-4047.13Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN3.979e-4047.13Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]

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Properties
Property NameValue
Genbank descriptionC02006F06SK IF1 Citrus clementina cDNA clone C02006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288896 ID=CX288896; Name=CX288896; organism=Citrus clementina; type=EST; length=488bp
TGATAATCGGCGACTCGGCGGTGGGGAAATCGAACCTACTGTCTCGTTAC
GCTCGGAACGAGTTCAATCCTCACTCGAAGGCGACAATTGGAGTCGAGTT
TCAAACGCAGAGCATGGAGATCGACGGCAAGGAAGTCAAGGCTCAGATTT
GGGACACCGCCGGCCAGGAGCGCTTCCGCGCCGTCACTTCTGCTTACTAC
AGAGGCGCCGTCGGTGCTCTCATTGTTTACGACATTACCAGGCGTACCAC
TTTTGACAGCATCTCTCGCTGGCTCGATGAGCTCAAGACTCATTCTGATA
CCACTGTGGCAAGGATGCTGGTCGGGAACAAATGTGATTTGGAGAGTATC
CGGAATGTGAGCACTGAAGAAGGCAAAAGCCTTGCAGAAGCAGAAGGGTT
GTTTTTCATGGAAACTTCTGCATTGGACTCGACGAATGTTAAAAATGCTT
TTGAGATTGTCATCCGAGAGATTTACAGCAATGTCAGC
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