CX288905

Overview
NameCX288905
Unique NameCX288905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.046e-22
Identity = 58/171 (33.92%), Postives = 95/171 (55.56%), Query Frame = 3
Query:   81 QRSKKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFS 593
            Q  K +RE V KI   G N    ++ I +  +   A  GI+A+       +E+LA  TG +I +   +     LG  +L+E+  +  + +I   G +  +A TI++RG + HV+DE ER+L DA+ V+   V D +++  GG PE+ +A  +DE A++  GK+  AIEAF+
Sbjct:  271 QEEKMLREMVDKIKEVGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVRDLTPEDLGEAELVEQRKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELAIRLDEYAKEVGGKEQLAIEAFA 441          
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: THSA_ARCFU (Thermosome subunit alpha OS=Archaeoglobus fulgidus GN=thsA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.046e-22
Identity = 57/171 (33.33%), Postives = 95/171 (55.56%), Query Frame = 3
Query:   81 QRSKKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFS 593
            Q  K ++E V ++   G N    ++ I +  +   A AGILA+       IE++A   G +I +      S  LG  +L+EE  +G++K++   G +  +A TI++RG S HV+DE ERSL DA+ V+   +   +V+ GGG PE+ +A ++ + A    G++  A EAF+
Sbjct:  271 QEEKMLKEMVDRLAEAGANVVFCQKGIDDLAQYYLAKAGILAVRRVKQSDIEKIAKACGAKIITDLREITSADLGEAELVEERKVGDEKMVFIEGCKNPKAVTILIRGGSEHVVDEVERSLQDAIKVVKTALESGKVVAGGGAPEIEVALKIRDWAPTLGGREQLAAEAFA 441          
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 58/171 (33.92%), Postives = 96/171 (56.14%), Query Frame = 3
Query:   81 QRSKKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFS 593
            Q  + +RE V KI   G N    ++ I +  +   A  GI+A+       +E+LA  TG +I +   +     LG  +L+E+  +  + +I   G +  +A TI++RG + HV+DE ER+L DA+ V+   V D ++L  GG PE+ +A ++DE A++  GK+  AIEAF+
Sbjct:  271 QEERMLREMVDKIKEVGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVRDLTPEDLGEAELVEQRKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKILPAGGAPEIELAIKLDEYAKEVGGKEQLAIEAFA 441          
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.490e-22
Identity = 57/171 (33.33%), Postives = 96/171 (56.14%), Query Frame = 3
Query:   81 QRSKKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFS 593
            Q  K ++E V KI   G N    ++ I +  +   A  GILA+       +E+LA  TG +I +   +     LG  +L+EE  +  + +I   G +  +A TI++RG + HV+DE ER+L DA+ V+   + D +++ GGG  E+ ++ ++DE A++  GK+  AIEAF+
Sbjct:  271 QEEKMLKEMVDKIKEVGANVVFVQKGIDDLAQHYLAKYGILAVRRVKKSDMEKLAKATGAKIVTNIRDLTPEDLGEAELVEERKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAIKVVKDILEDGKIIAGGGASEIELSIKLDEYAKEVGGKEQLAIEAFA 441          
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.558e-22
Identity = 57/171 (33.33%), Postives = 96/171 (56.14%), Query Frame = 3
Query:   81 QRSKKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFS 593
            Q  K ++E V KI   G N    ++ I +  +   A  GILA+       +E+LA  TG +I +   +     LG  +L+EE  +  + +I   G +  +A TI++RG + HV+DE ER+L DA+ V+   + D +++ GGG  E+ ++ ++DE A++  GK+  AIEAF+
Sbjct:  271 QEEKMLKEMVDKIKEVGANVVFVQKGIDDLAQHYLAKYGILAVRRVKKSDMEKLAKATGAKIVTNIRDLTPEDLGEAELVEERKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDILEDGKIIAGGGAAEIELSIKLDEYAKEVGGKEQLAIEAFA 441          
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.558e-22
Identity = 57/171 (33.33%), Postives = 95/171 (55.56%), Query Frame = 3
Query:   81 QRSKKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFS 593
            Q  K +RE V KI   G N    ++ I +  +   A  GI+A+       +E+LA  TG +I +   +     LG  +L+E+  +  + +I   G +  +A TI++RG + HV+DE ER+L DA+ V+   V D +++  GG PE+ ++  +DE A++  GK+  AIEAF+
Sbjct:  271 QEEKMLREMVDKIKEVGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVRDLTPEDLGEAELVEQRKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELSIRLDEYAKEVGGKEQLAIEAFA 441          
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 7.775e-22
Identity = 59/171 (34.50%), Postives = 96/171 (56.14%), Query Frame = 3
Query:   81 QRSKKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFS 593
            + SK +++ V K+ + G N  + ++ I +  +   A  GILA+       IE+L    G  I S+  +     LG+ +L+EE  +G DK++   G +  +A  I+LRG++   LDEAERS++DAL  L   + +  +L GGG  E+ +A ++ E AR   GK+  AIEAF+
Sbjct:  276 EESKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKKGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERRVGNDKMVFIEGAKNLKAVNILLRGSNDMALDEAERSINDALHALRNILLEPVILPGGGAIELELAMKLREYARSVGGKEQLAIEAFA 446          
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.015e-21
Identity = 59/171 (34.50%), Postives = 96/171 (56.14%), Query Frame = 3
Query:   81 QRSKKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFS 593
            + SK +++ V K+ + G N  + ++ I +  +   A  GILA+       IE+L    G  I S+  +     LG+ +L+EE  +G DK++   G +  +A  I+LRG++   LDEAERS++DAL  L   + +  +L GGG  E+ +A ++ E AR   GK+  AIEAF+
Sbjct:  276 EESKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKKGILAVRRVKRSDIEKLEKALGARIISSIKDATPDDLGYAELVEERRVGNDKMVFIEGAKNLKAVNILLRGSNDMALDEAERSINDALHALRNILLEPVILPGGGAIELELAMKLREYARSVGGKEQLAIEAFA 446          
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.955e-21
Identity = 56/171 (32.75%), Postives = 94/171 (54.97%), Query Frame = 3
Query:   81 QRSKKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFS 593
            Q  K +++ V  I   G N    ++ I +  +   A  GI+A+       +E+LA  TG +I +   +     LG+ +++EE  +  + +I   G +  +A TI++RG + HV+DE ER+L DA+ V+   + D  VL  GG PE+ +A  VDE A++  GK++ AIE F+
Sbjct:  271 QEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEIVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAISVDEYAKQVGGKEALAIENFA 441          
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: TCPA_TETPY (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.859e-21
Identity = 52/171 (30.41%), Postives = 93/171 (54.39%), Query Frame = 3
Query:   96 MREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVK------LGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAF 590
            ++E+ +KII  G N  +    + +   +   +AG++ +   D   + RLA  TGG I +T   PE  +      LG C  + E  +G++  I F G +     +I++RGA+  ++DE +RSLHD+LCV+ +T+    V+ GGG  E+ ++ ++++ AR    K+  A+  F
Sbjct:  271 LKERCKKIIEAGANVIITSAGMDDVATKYLVEAGVMGLRRVDKHDLRRLAKATGGTIVTTLATPEGDEVFEASYLGECAEVYEEAVGDNDCIFFKGTKRANCASIIIRGANEFMVDEVDRSLHDSLCVVKRTLESGYVVPGGGAVEIALSIKLEDFARTLGTKEQTAVAEF 441          
The following BLAST results are available for this feature:
BLAST of CX288905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
THSB_PYRKO2.046e-2233.92Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
THSA_ARCFU2.046e-2233.33Thermosome subunit alpha OS=Archaeoglobus fulgidus... [more]
THS_DESSY2.672e-2233.92Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
THS_PYRHO3.490e-2233.33Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
THS_PYRAB4.558e-2233.33Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]
THSB_THEK14.558e-2233.33Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSA_SULSO7.775e-2234.50Thermosome subunit alpha OS=Sulfolobus solfataricu... [more]
THSA_SULSH1.015e-2134.50Thermosome subunit alpha OS=Sulfolobus shibatae GN... [more]
THSA_THEK82.955e-2132.75Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
TCPA_TETPY3.859e-2130.41T-complex protein 1 subunit alpha OS=Tetrahymena p... [more]

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Properties
Property NameValue
Genbank descriptionC02006G04SK IF1 Citrus clementina cDNA clone C02006G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288905 ID=CX288905; Name=CX288905; organism=Citrus clementina; type=EST; length=598bp
AATGGATACAGATAAAGTGAAGATTTATGGGGCACGTGTTCGTGTTGATT
CAATGTCAAAGGCCGCTGAGATAGAAGGTGCAGAGAAGCAAAAAAATGAG
GGAAAAGGTGCAAAAGATAATAGCTCATGGGATTAACTGCTTCGTTAATA
GGCAGTTGATTTACAATTTTCCAGAGGAACTCTTTGCAGATGCGGGTATA
CTTGCAATTGAGCATGCTGATTTTGATGGTATAGAGCGTCTGGCTTTAGT
AACTGGTGGTGAAATTGCATCAACCTTTGATAATCCAGAGTCAGTTAAGC
TTGGGCACTGCAAGCTTATTGAGGAAATTATGATTGGCGAGGACAAGTTG
ATCCACTTTTCTGGTGTTGAAATGGGTCAGGCTTGTACCATAGTGTTGAG
AGGTGCAAGCCATCATGTGCTTGACGAGGCTGAGCGGTCTCTGCATGATG
CCTTGTGTGTGCTGTCTCAGACAGTCAATGACAGCAGGGTTTTGTTTGGA
GGTGGATGGCCTGAGATGGTTATGGCCAAGGAAGTGGATGAGCTGGCACG
TAAGACTCCTGGGAAAAAGTCCCATGCCATTGAGGCTTTCTCACGGGC
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