CX288913

Overview
NameCX288913
Unique NameCX288913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length271
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 8.847e-20
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            Y R+ DYAR R +AD  GA L+ DMAH+SGLVAA    +PFE+CH+V+TTTHK+LRG RAGMIFYR
Sbjct:  205 YSRNLDYARLRKIADDNGAYLMADMAHVSGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYR 270          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.155e-19
Identity = 44/66 (66.67%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            Y R+ DY R R +AD+ GA L+ DMAHISGLV A    +PFE+CH+VTTTTHK+LRG RAGMIFYR
Sbjct:  205 YSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYR 270          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYC_CANGA (Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata GN=SHM2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.971e-19
Identity = 50/90 (55.56%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVKDFEDNNNF 270
            Y R  DY R R +ADKCGA L+ DMAHISGLVAA    +PFEY  IVTTTTHKSLRGPR  MIF+R           +    D E+  NF
Sbjct:  196 YCRLIDYKRMREIADKCGAYLMVDMAHISGLVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRRGIRSVNQKTGKEIPYDLENPINF 285          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.734e-19
Identity = 45/66 (68.18%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            Y R  DY R R + + C A LLCDMAHISGLVAA    +PFEY  IVTTTTHKSLRGPR  MIFYR
Sbjct:  197 YARLVDYKRMRKITEMCNAYLLCDMAHISGLVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFYR 262          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.734e-19
Identity = 50/90 (55.56%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVKDFEDNNNF 270
            Y R  DY R R +ADK GA L+ DMAHISGLVAA    +PFEY  IVTTTTHKSLRGPR  MIF+R           E  + D E   NF
Sbjct:  196 YCRLIDYKRMREIADKVGAYLMVDMAHISGLVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRRGVRSVHPKTGEEVMYDLEGPINF 285          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 7.489e-19
Identity = 45/66 (68.18%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            Y R  DY RFR +A K GA L+ DMAHISGLVAA    +PFEY  +VTTTTHKSLRGPR  MIFYR
Sbjct:  235 YARHLDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGAMIFYR 300          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_PARD8 (Serine hydroxymethyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=glyA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.489e-19
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            Y RDWDY R R +ADK GALL+ DMAH +GL+AA    NP EY HIVT+TTHK+LRGPR G+I
Sbjct:  170 YSRDWDYKRMREIADKVGALLMIDMAHPAGLIAAGLLNNPLEYAHIVTSTTHKTLRGPRGGII 232          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_AGRVS (Serine hydroxymethyltransferase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=glyA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.781e-19
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            Y R WD+ RFR +AD+ GA L+ DMAHI+GLVA  +  +PF +CH+ TTTTHKSLRGPR GMI
Sbjct:  182 YSRIWDWKRFREIADEVGAYLMVDMAHIAGLVAGNQHPSPFPHCHVATTTTHKSLRGPRGGMI 244          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.277e-18
Identity = 49/89 (55.06%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVKDFEDNNN 267
            Y R +DYAR R V DK  A+LL DMAHISGLVAA    +PF+Y  +VTTTTHKSLRGPR  MIF+R           E  + D+ED  N
Sbjct:  235 YARLYDYARIRKVCDKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEVNKQGKE-VLYDYEDKIN 322          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_WOLSU (Serine hydroxymethyltransferase OS=Wolinella succinogenes GN=glyA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.277e-18
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            Y R+ D+ RFR +AD  GALLL D+AH++GL+ A E  NPF +CHIVTTTTHK+LRGPR GMI
Sbjct:  174 YARELDFKRFREIADSVGALLLGDVAHVAGLIVAGEYPNPFPHCHIVTTTTHKTLRGPRGGMI 236          
The following BLAST results are available for this feature:
BLAST of CX288913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_BOVIN8.847e-2066.67Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYC_RABIT1.155e-1966.67Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYC_CANGA1.971e-1955.56Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYC_SCHPO5.734e-1968.18Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC_ASHGO5.734e-1955.56Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYC_CAEBR7.489e-1968.18Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYA_PARD87.489e-1966.67Serine hydroxymethyltransferase OS=Parabacteroides... [more]
GLYA_AGRVS9.781e-1963.49Serine hydroxymethyltransferase OS=Agrobacterium v... [more]
GLYN_FLAPR1.277e-1855.06Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYA_WOLSU1.277e-1865.08Serine hydroxymethyltransferase OS=Wolinella succi... [more]

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Properties
Property NameValue
Genbank descriptionC02006H02SK IF1 Citrus clementina cDNA clone C02006H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288913 ID=CX288913; Name=CX288913; organism=Citrus clementina; type=EST; length=271bp
TATCCGAGGGACTGGGATTATGCTAGATTCAGAGCTGTTGCTGATAAGTG
TGGTGCCCTTTTGCTCTGTGATATGGCTCATATCAGTGGCCTTGTTGCTG
CTCAGGAAGCTGCAAACCCCTTTGAGTACTGTCACATAGTCACAACCACT
ACTCACAAGAGCTTGCGGGGTCCTAGGGCTGGTATGATCTTCTACCGGAA
GGGTCCTAAACCACCCAAGAAGGGCCAACCAGAGGGTGCGGTAAAAGACT
TTGAAGACAATAACAACTTTG
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