CX288913

Overview
NameCX288913
Unique NameCX288913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length271
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.668e-18
Identity = 48/90 (53.33%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVKDFEDNNNF 270
            Y R  DY R R +ADK GA L+ DMAHISGL+AA    +PFEY  IVTTTTHKSLRGPR  MIF+R           +  + D E+  NF
Sbjct:  197 YCRLIDYKRMREIADKVGAYLVVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRRGVRSVNPKTGQEILYDLENPINF 286          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.668e-18
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            Y R  DY RFR +A K GA L+ DMAHISGLVAA    +PFEY  +VTTTTHKSLRGPR  +IFYR
Sbjct:  231 YARHLDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGALIFYR 296          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_CAMHC (Serine hydroxymethyltransferase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=glyA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.668e-18
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR+ D+A+FR +AD  GA L  D+AHI+GLV A E  NPF YCH+V++TTHK+LRGPR G+I
Sbjct:  173 YPREIDFAKFREIADSVGAFLFADVAHIAGLVVAGEHTNPFPYCHVVSSTTHKTLRGPRGGII 235          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA1_AGRT5 (Serine hydroxymethyltransferase 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glyA1 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.668e-18
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            Y R WD+ RFR +AD+ GA L+ DMAHI+GLVA  +  +PF +CH+ TTTTHKSLRGPR GMI
Sbjct:  182 YSRVWDWKRFREIADEVGAYLMVDMAHIAGLVAGGQHPSPFPHCHVATTTTHKSLRGPRGGMI 244          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_AZOPC (Serine hydroxymethyltransferase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=glyA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.179e-18
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            Y RDWDY R R +ADK GA+ + DMAH +GL+AAQ   NP  Y HIVT+TTHK+LRGPR G+I
Sbjct:  170 YSRDWDYQRIRLIADKIGAIFMVDMAHPAGLIAAQLLDNPLHYAHIVTSTTHKTLRGPRGGII 232          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_AGRRK (Serine hydroxymethyltransferase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=glyA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.179e-18
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            Y R WD+ RFR +AD  GA L+ DMAHI+GLVA  +  +PF +CH+ TTTTHKSLRGPR GMI
Sbjct:  184 YSRIWDWKRFREIADSVGAYLMVDMAHIAGLVAGGQHPSPFPHCHVATTTTHKSLRGPRGGMI 246          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA1_RHIME (Serine hydroxymethyltransferase 1 OS=Rhizobium meliloti GN=glyA1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.179e-18
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            Y R WD+ RFR +AD+ GA L+ DMAHI+GLVA  +  +PF +CH+ TTTTHKSLRGPR GMI
Sbjct:  184 YSRIWDWKRFREIADEVGAWLMVDMAHIAGLVAGGQHPSPFPHCHVATTTTHKSLRGPRGGMI 246          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.846e-18
Identity = 49/89 (55.06%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVKDFEDNNN 267
            Y R +DYAR R V DK  A+LL DMAHISGLVAA    +PF+Y  +VTTTTHKSLRGPR  MIF+R           E    D+ED  N
Sbjct:  235 YARLYDYARIRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKE-VFYDYEDKIN 322          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.846e-18
Identity = 48/89 (53.93%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVKDFEDNNN 267
            Y R +DYAR R V +K  A++L DMAHISGLVAA    +PF+Y  +VTTTTHKSLRGPR  MIF+R           E  + DFED  N
Sbjct:  234 YARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKE-VLYDFEDKIN 321          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_SPHAL (Serine hydroxymethyltransferase OS=Sphingopyxis alaskensis GN=glyA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.846e-18
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR  D+ARFRA+AD  GALL+ DMAH +GLVA     +P +Y H+VTTTTHK+LRGPR GMI
Sbjct:  190 YPRTLDFARFRAIADDVGALLMVDMAHFAGLVAGGAHPSPMQYAHVVTTTTHKTLRGPRGGMI 252          
The following BLAST results are available for this feature:
BLAST of CX288913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_CANAL1.668e-1853.33Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYC_CAEEL1.668e-1866.67Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYA_CAMHC1.668e-1861.90Serine hydroxymethyltransferase OS=Campylobacter h... [more]
GLYA1_AGRT51.668e-1863.49Serine hydroxymethyltransferase 1 OS=Agrobacterium... [more]
GLYA_AZOPC2.179e-1863.49Serine hydroxymethyltransferase OS=Azobacteroides ... [more]
GLYA_AGRRK2.179e-1863.49Serine hydroxymethyltransferase OS=Agrobacterium r... [more]
GLYA1_RHIME2.179e-1863.49Serine hydroxymethyltransferase 1 OS=Rhizobium mel... [more]
GLYM_PEA2.846e-1855.06Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH2.846e-1853.93Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYA_SPHAL2.846e-1865.08Serine hydroxymethyltransferase OS=Sphingopyxis al... [more]

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Properties
Property NameValue
Genbank descriptionC02006H02SK IF1 Citrus clementina cDNA clone C02006H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288913 ID=CX288913; Name=CX288913; organism=Citrus clementina; type=EST; length=271bp
TATCCGAGGGACTGGGATTATGCTAGATTCAGAGCTGTTGCTGATAAGTG
TGGTGCCCTTTTGCTCTGTGATATGGCTCATATCAGTGGCCTTGTTGCTG
CTCAGGAAGCTGCAAACCCCTTTGAGTACTGTCACATAGTCACAACCACT
ACTCACAAGAGCTTGCGGGGTCCTAGGGCTGGTATGATCTTCTACCGGAA
GGGTCCTAAACCACCCAAGAAGGGCCAACCAGAGGGTGCGGTAAAAGACT
TTGAAGACAATAACAACTTTG
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