CX288913

Overview
NameCX288913
Unique NameCX288913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length271
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_HELPJ (Serine hydroxymethyltransferase OS=Helicobacter pylori J99 GN=glyA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.340e-18
Identity = 38/63 (60.32%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR+ D+ +FR +AD  GALLL D+AH++GLV A E A+PF +CH+V++TTHK+LRGPR G+I
Sbjct:  174 YPREIDFKKFREIADAVGALLLGDIAHVAGLVVANEHAHPFPHCHVVSSTTHKTLRGPRGGLI 236          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA2_RALEJ (Serine hydroxymethyltransferase 2 OS=Ralstonia eutropha (strain JMP134) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.340e-18
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR  D+ARFRA+AD  GA L+ DMAHI+G++AA   +NP +Y H+VT+TTHK+LRGPR G +
Sbjct:  182 YPRQLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHSNPVDYAHVVTSTTHKTLRGPRGGFV 244          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA2_BURTA (Serine hydroxymethyltransferase 2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.340e-18
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR  D+ARFRA+AD  GA L+ DMAHI+G++AA   ANP E+ H+VT+TTHK+LRGPR G +
Sbjct:  182 YPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFV 244          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA2_BURPS (Serine hydroxymethyltransferase 2 OS=Burkholderia pseudomallei GN=glyA2 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.340e-18
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR  D+ARFRA+AD  GA L+ DMAHI+G++AA   ANP E+ H+VT+TTHK+LRGPR G +
Sbjct:  182 YPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFV 244          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA2_BURP1 (Serine hydroxymethyltransferase 2 OS=Burkholderia pseudomallei (strain 1710b) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.340e-18
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR  D+ARFRA+AD  GA L+ DMAHI+G++AA   ANP E+ H+VT+TTHK+LRGPR G +
Sbjct:  182 YPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFV 244          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA2_BURMA (Serine hydroxymethyltransferase 2 OS=Burkholderia mallei GN=glyA2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.340e-18
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR  D+ARFRA+AD  GA L+ DMAHI+G++AA   ANP E+ H+VT+TTHK+LRGPR G +
Sbjct:  182 YPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFV 244          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.280e-18
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVKDFEDNNNF 270
            Y R  DY R R +AD  GA L+ DMAHISGL+A++   +PF Y  +VTTTTHKSLRGPR  MIF+R           +  + D ED  NF
Sbjct:  197 YCRLIDYERMRKIADSVGAYLVVDMAHISGLIASEVIPSPFLYADVVTTTTHKSLRGPRGAMIFFRRGVRSVDAKTGKETLYDLEDKINF 286          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA1_BURS3 (Serine hydroxymethyltransferase 1 OS=Burkholderia sp. (strain 383) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.280e-18
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR  D+ARFRA+AD  GA L+ DMAHI+G++AA   ANP E+ H+VT+TTHK+LRGPR G +
Sbjct:  182 YPRALDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFV 244          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_ERYLH (Serine hydroxymethyltransferase OS=Erythrobacter litoralis (strain HTCC2594) GN=glyA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.081e-17
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFY 195
            Y R WD+ RFR +AD+  A LLCDM+HISGLVA     +PF + HIVT+TTHKSLRGPR+G+I +
Sbjct:  190 YSRLWDFPRFREIADEVDATLLCDMSHISGLVAGGAHPSPFPHAHIVTSTTHKSLRGPRSGIILW 254          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_BACTN (Serine hydroxymethyltransferase OS=Bacteroides thetaiotaomicron GN=glyA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.081e-17
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            Y R+WDY R R +ADK GA+L+ DMAH +GL+AA    NP +Y HIVT+TTHK+LRGPR G+I
Sbjct:  170 YSREWDYKRMREIADKVGAILMIDMAHPAGLIAAGLLENPVKYAHIVTSTTHKTLRGPRGGVI 232          
The following BLAST results are available for this feature:
BLAST of CX288913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_HELPJ6.340e-1860.32Serine hydroxymethyltransferase OS=Helicobacter py... [more]
GLYA2_RALEJ6.340e-1860.32Serine hydroxymethyltransferase 2 OS=Ralstonia eut... [more]
GLYA2_BURTA6.340e-1861.90Serine hydroxymethyltransferase 2 OS=Burkholderia ... [more]
GLYA2_BURPS6.340e-1861.90Serine hydroxymethyltransferase 2 OS=Burkholderia ... [more]
GLYA2_BURP16.340e-1861.90Serine hydroxymethyltransferase 2 OS=Burkholderia ... [more]
GLYA2_BURMA6.340e-1861.90Serine hydroxymethyltransferase 2 OS=Burkholderia ... [more]
GLYC_NEUCR8.280e-1850.00Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]
GLYA1_BURS38.280e-1861.90Serine hydroxymethyltransferase 1 OS=Burkholderia ... [more]
GLYA_ERYLH1.081e-1761.54Serine hydroxymethyltransferase OS=Erythrobacter l... [more]
GLYA_BACTN1.081e-1761.90Serine hydroxymethyltransferase OS=Bacteroides the... [more]

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Properties
Property NameValue
Genbank descriptionC02006H02SK IF1 Citrus clementina cDNA clone C02006H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288913 ID=CX288913; Name=CX288913; organism=Citrus clementina; type=EST; length=271bp
TATCCGAGGGACTGGGATTATGCTAGATTCAGAGCTGTTGCTGATAAGTG
TGGTGCCCTTTTGCTCTGTGATATGGCTCATATCAGTGGCCTTGTTGCTG
CTCAGGAAGCTGCAAACCCCTTTGAGTACTGTCACATAGTCACAACCACT
ACTCACAAGAGCTTGCGGGGTCCTAGGGCTGGTATGATCTTCTACCGGAA
GGGTCCTAAACCACCCAAGAAGGGCCAACCAGAGGGTGCGGTAAAAGACT
TTGAAGACAATAACAACTTTG
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