CX288913

Overview
NameCX288913
Unique NameCX288913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length271
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_DEHSC (Serine hydroxymethyltransferase OS=Dehalococcoides sp. (strain CBDB1) GN=glyA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.111e-13
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR  D+ RFRA+ DK  A L+ D+AHI+GLVAA    +P  Y  +VT+T+HK+LRGPR G I
Sbjct:  174 YPRILDFERFRAICDKVDAKLMVDIAHIAGLVAAGLHPSPVPYADVVTSTSHKTLRGPRGGFI 236          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_DEHSB (Serine hydroxymethyltransferase OS=Dehalococcoides sp. (strain BAV1) GN=glyA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.111e-13
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR  D+ RFRA+ DK  A L+ D+AHI+GLVAA    +P  Y  +VT+T+HK+LRGPR G I
Sbjct:  174 YPRILDFERFRAICDKVDAKLMVDIAHIAGLVAAGLHPSPVPYADVVTSTSHKTLRGPRGGFI 236          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_DEHE1 (Serine hydroxymethyltransferase OS=Dehalococcoides ethenogenes (strain 195) GN=glyA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.111e-13
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR  D+ RFRA+ DK  A L+ D+AHI+GLVAA    +P  Y  +VT+T+HK+LRGPR G I
Sbjct:  174 YPRILDFERFRAICDKVDAKLMVDIAHIAGLVAAGLHPSPVPYADVVTSTSHKTLRGPRGGFI 236          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_AERS4 (Serine hydroxymethyltransferase OS=Aeromonas salmonicida (strain A449) GN=glyA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.111e-13
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   16 DYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            D+AR R +ADK GA L  DMAH++GL+AA    NP  + H+VT+TTHK+L GPR G+I
Sbjct:  182 DWARMREIADKIGAWLFVDMAHVAGLIAAGVYPNPVPHAHVVTSTTHKTLAGPRGGLI 239          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_AERHH (Serine hydroxymethyltransferase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=glyA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.111e-13
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   16 DYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            D+AR R +ADK GA L  DMAH++GL+AA    NP  + H+VT+TTHK+L GPR G+I
Sbjct:  182 DWARMREIADKVGAWLFVDMAHVAGLIAAGVYPNPVPHAHVVTSTTHKTLAGPRGGLI 239          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_ACIAD (Serine hydroxymethyltransferase OS=Acinetobacter sp. (strain ADP1) GN=glyA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.111e-13
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            Y R  D+ RFR +ADK GA L  DMAH++GLVAA    +P +   + TTTTHK+LRGPR+G+I
Sbjct:  177 YSRIVDWQRFRDIADKVGAYLFVDMAHVAGLVAAGVYPSPVQIADVTTTTTHKTLRGPRSGLI 239          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA1_ERWCT (Serine hydroxymethyltransferase 1 OS=Erwinia carotovora subsp. atroseptica GN=glyA1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.111e-13
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   16 DYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            D+A+ R +AD  GA L  DMAH++GL+AA    NP  + HIVTTTTHK+L GPR G+I
Sbjct:  182 DWAKMREIADSIGAYLFVDMAHVAGLIAADVYPNPVPHAHIVTTTTHKTLAGPRGGLI 239          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_TOLAT (Serine hydroxymethyltransferase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=glyA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.757e-13
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   16 DYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            D+A+ R +ADK GA L  DMAH++GLVAA    NP  + H+VT+TTHK+L GPR G+I
Sbjct:  182 DWAKMREIADKVGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTSTTHKTLAGPRGGLI 239          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_ROSS1 (Serine hydroxymethyltransferase OS=Roseiflexus sp. (strain RS-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.757e-13
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            Y R  DYA FR +AD  GA L  D+AH +GL+A     +P +Y H+VT+TTHK+LRGPR G+I
Sbjct:  177 YSRAIDYAVFRQIADDVGAFLFADIAHPAGLIAKGLLPSPIKYAHVVTSTTHKTLRGPRGGII 239          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_PSYWF (Serine hydroxymethyltransferase OS=Psychrobacter sp. (strain PRwf-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.757e-13
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            Y +  D+ RFR +AD  GA L  DMAH++GLVAA    +P  +  +VTTTTHK+LRGPR+G+I  R
Sbjct:  177 YSQVVDWQRFRDIADSVGAYLFVDMAHVAGLVAAGVYPSPVPFADVVTTTTHKTLRGPRSGLILSR 242          
The following BLAST results are available for this feature:
BLAST of CX288913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_DEHSC2.111e-1355.56Serine hydroxymethyltransferase OS=Dehalococcoides... [more]
GLYA_DEHSB2.111e-1355.56Serine hydroxymethyltransferase OS=Dehalococcoides... [more]
GLYA_DEHE12.111e-1355.56Serine hydroxymethyltransferase OS=Dehalococcoides... [more]
GLYA_AERS42.111e-1356.90Serine hydroxymethyltransferase OS=Aeromonas salmo... [more]
GLYA_AERHH2.111e-1356.90Serine hydroxymethyltransferase OS=Aeromonas hydro... [more]
GLYA_ACIAD2.111e-1355.56Serine hydroxymethyltransferase OS=Acinetobacter s... [more]
GLYA1_ERWCT2.111e-1356.90Serine hydroxymethyltransferase 1 OS=Erwinia carot... [more]
GLYA_TOLAT2.757e-1356.90Serine hydroxymethyltransferase OS=Tolumonas auens... [more]
GLYA_ROSS12.757e-1353.97Serine hydroxymethyltransferase OS=Roseiflexus sp.... [more]
GLYA_PSYWF2.757e-1353.03Serine hydroxymethyltransferase OS=Psychrobacter s... [more]

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Properties
Property NameValue
Genbank descriptionC02006H02SK IF1 Citrus clementina cDNA clone C02006H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288913 ID=CX288913; Name=CX288913; organism=Citrus clementina; type=EST; length=271bp
TATCCGAGGGACTGGGATTATGCTAGATTCAGAGCTGTTGCTGATAAGTG
TGGTGCCCTTTTGCTCTGTGATATGGCTCATATCAGTGGCCTTGTTGCTG
CTCAGGAAGCTGCAAACCCCTTTGAGTACTGTCACATAGTCACAACCACT
ACTCACAAGAGCTTGCGGGGTCCTAGGGCTGGTATGATCTTCTACCGGAA
GGGTCCTAAACCACCCAAGAAGGGCCAACCAGAGGGTGCGGTAAAAGACT
TTGAAGACAATAACAACTTTG
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