CX288913

Overview
NameCX288913
Unique NameCX288913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length271
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.412e-17
Identity = 48/89 (53.93%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVKDFEDNNN 267
            Y R +DY R R V +K  A+LL DMAHISGLVAA    +PF+Y  +VTTTTHKSLRGPR  MIFYR           E    D+ED  N
Sbjct:  235 YARLYDYDRIRKVCNKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKEVNKQGKE-VFYDYEDKIN 322          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_SYNS3 (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain CC9311) GN=glyA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.412e-17
Identity = 41/66 (62.12%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            YPR  D+A FR++AD+ GA LL DMAHI+GLVAA   A+P  +C +VTTTTHK+LRGPR G+I  R
Sbjct:  183 YPRSIDFAAFRSIADEVGAYLLADMAHIAGLVAAGVHASPVPHCDVVTTTTHKTLRGPRGGLILCR 248          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_METRJ (Serine hydroxymethyltransferase OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=glyA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.412e-17
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR WD+A+FR +AD  GA  + DMAH +GLVAA    +PF + H+ TTTTHK+LRGPR GMI
Sbjct:  190 YPRHWDFAKFREIADSVGAYFMVDMAHFAGLVAAGVHPSPFPHAHVATTTTHKTLRGPRGGMI 252          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_HELPG (Serine hydroxymethyltransferase OS=Helicobacter pylori (strain G27) GN=glyA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.412e-17
Identity = 37/63 (58.73%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR+ D+ +FR +AD+ GALLL D+AH++GLV   E A+PF +CH+V++TTHK+LRGPR G+I
Sbjct:  174 YPREIDFKKFREIADEVGALLLGDIAHVAGLVVTNEHAHPFPHCHVVSSTTHKTLRGPRGGII 236          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_BACV8 (Serine hydroxymethyltransferase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=glyA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.412e-17
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            Y R+WDY R R +ADK GA+L+ DMAH +GL+AA    NP +Y HIVT+TTHK+LRGPR G+I
Sbjct:  170 YSREWDYKRMREIADKVGAILMIDMAHPAGLIAAGLLDNPVKYAHIVTSTTHKTLRGPRGGVI 232          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_BACFR (Serine hydroxymethyltransferase OS=Bacteroides fragilis GN=glyA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.412e-17
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            Y R+WDY R R +ADK GA+L+ DMAH +GL+AA    NP +Y HIVT+TTHK+LRGPR G+I
Sbjct:  170 YSREWDYKRMREIADKVGAILMIDMAHPAGLIAAGLLDNPVKYAHIVTSTTHKTLRGPRGGVI 232          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_BACFN (Serine hydroxymethyltransferase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=glyA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.412e-17
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            Y R+WDY R R +ADK GA+L+ DMAH +GL+AA    NP +Y HIVT+TTHK+LRGPR G+I
Sbjct:  170 YSREWDYKRMREIADKVGAILMIDMAHPAGLIAAGLLDNPVKYAHIVTSTTHKTLRGPRGGVI 232          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_AMOA5 (Serine hydroxymethyltransferase OS=Amoebophilus asiaticus (strain 5a2) GN=glyA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.412e-17
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            Y RDWDY R RA+AD+ GALLL D++H +GL++     +P  YCH +TTTTHK+LRGPR GMI
Sbjct:  170 YSRDWDYKRLRAIADQVGALLLADISHPAGLISRGLLNDPVPYCHFITTTTHKTLRGPRGGMI 232          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_RHIL3 (Serine hydroxymethyltransferase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=glyA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.845e-17
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            Y R WD+ RFR +AD  GA L+ DMAHI+GLVA     +PF +CH+ TTTTHKSLRGPR G+I
Sbjct:  184 YSRIWDWKRFREIADSVGAYLMVDMAHIAGLVAGGVHPSPFPHCHVATTTTHKSLRGPRGGVI 246          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_METS4 (Serine hydroxymethyltransferase OS=Methylobacterium sp. (strain 4-46) GN=glyA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.845e-17
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR WD+A+FR +AD  GA+   DMAH +GLVA     +PF + H+VTTTTHK+LRGPR GM+
Sbjct:  189 YPRHWDFAKFREIADSVGAVFFVDMAHFAGLVAGGVHPSPFPHAHVVTTTTHKTLRGPRGGMV 251          
The following BLAST results are available for this feature:
BLAST of CX288913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_SOLTU1.412e-1753.93Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYA_SYNS31.412e-1762.12Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_METRJ1.412e-1760.32Serine hydroxymethyltransferase OS=Methylobacteriu... [more]
GLYA_HELPG1.412e-1758.73Serine hydroxymethyltransferase OS=Helicobacter py... [more]
GLYA_BACV81.412e-1761.90Serine hydroxymethyltransferase OS=Bacteroides vul... [more]
GLYA_BACFR1.412e-1761.90Serine hydroxymethyltransferase OS=Bacteroides fra... [more]
GLYA_BACFN1.412e-1761.90Serine hydroxymethyltransferase OS=Bacteroides fra... [more]
GLYA_AMOA51.412e-1760.32Serine hydroxymethyltransferase OS=Amoebophilus as... [more]
GLYA_RHIL31.845e-1761.90Serine hydroxymethyltransferase OS=Rhizobium legum... [more]
GLYA_METS41.845e-1758.73Serine hydroxymethyltransferase OS=Methylobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionC02006H02SK IF1 Citrus clementina cDNA clone C02006H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288913 ID=CX288913; Name=CX288913; organism=Citrus clementina; type=EST; length=271bp
TATCCGAGGGACTGGGATTATGCTAGATTCAGAGCTGTTGCTGATAAGTG
TGGTGCCCTTTTGCTCTGTGATATGGCTCATATCAGTGGCCTTGTTGCTG
CTCAGGAAGCTGCAAACCCCTTTGAGTACTGTCACATAGTCACAACCACT
ACTCACAAGAGCTTGCGGGGTCCTAGGGCTGGTATGATCTTCTACCGGAA
GGGTCCTAAACCACCCAAGAAGGGCCAACCAGAGGGTGCGGTAAAAGACT
TTGAAGACAATAACAACTTTG
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