CX288913

Overview
NameCX288913
Unique NameCX288913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length271
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_HELPH (Serine hydroxymethyltransferase OS=Helicobacter pylori (strain HPAG1) GN=glyA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.845e-17
Identity = 37/63 (58.73%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR+ D+ +FR +AD+ GALLL D+AH++GLV   E A+PF +CH+V++TTHK+LRGPR G+I
Sbjct:  174 YPREIDFKKFREIADEVGALLLGDIAHVAGLVVTGEHAHPFPHCHVVSSTTHKTLRGPRGGLI 236          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_CYTH3 (Serine hydroxymethyltransferase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=glyA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.845e-17
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            Y RDWDYARFR +AD  GA+LL D++H +GL+A     +P  +CHIV+TTTHK+LRGPR G+I
Sbjct:  178 YSRDWDYARFRKIADSVGAILLADISHPAGLIAKGLLNDPIPHCHIVSTTTHKTLRGPRGGVI 240          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_BEII9 (Serine hydroxymethyltransferase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=glyA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.845e-17
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR WD+ARFRA+AD  GA    DMAH +GLVA     +PF + H+VT+TTHK+LRGPR G++
Sbjct:  190 YPRHWDFARFRAIADSVGAYFFVDMAHFAGLVAGGAHPSPFPHAHVVTSTTHKTLRGPRGGLV 252          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_SYNPX (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain WH8102) GN=glyA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.409e-17
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            YPR  D+A FRA+AD+ GA LL DMAHI+GLVAA    +P  +C +VTTTTHK+LRGPR G+I  R
Sbjct:  183 YPRTIDFAAFRAIADEVGAFLLADMAHIAGLVAAGVHPSPVPHCDVVTTTTHKTLRGPRGGLILCR 248          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_SPHWW (Serine hydroxymethyltransferase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=glyA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.409e-17
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR  D+ARFRA+AD+ GAL + DMAH +GLVA      PF + H+VTTTTHK+LRGPR GMI
Sbjct:  192 YPRHIDFARFRAIADEVGALFMVDMAHFAGLVAGGVHPTPFGHAHVVTTTTHKTLRGPRGGMI 254          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_RICTY (Serine hydroxymethyltransferase OS=Rickettsia typhi GN=glyA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.409e-17
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR  D+ARFR +ADK GA L+ D+AHI+GLVA  E  +P  Y H+VT+TTHK+LRGPR G+I
Sbjct:  178 YPRKIDFARFREIADKVGAYLMADIAHIAGLVATGEHQSPIPYAHVVTSTTHKTLRGPRGGLI 240          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_PHEZH (Serine hydroxymethyltransferase OS=Phenylobacterium zucineum (strain HLK1) GN=glyA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.409e-17
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            Y R  D+ +FR +AD+ GA+L+CD+AH +GL+ A E  NPF + HIVTTTTHK+LRGPR GMI
Sbjct:  187 YSRHIDFKKFREIADEVGAILMCDVAHYAGLIVAGEYPNPFPHAHIVTTTTHKTLRGPRGGMI 249          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_MOOTA (Serine hydroxymethyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=glyA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.409e-17
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR  D+ARFR +AD+ GALL+ DMAHI+GLVAA    NP  Y H VTTTTHK++RGPR G+I
Sbjct:  176 YPRVIDFARFREIADEVGALLMVDMAHIAGLVAAGIHPNPVPYAHFVTTTTHKTMRGPRGGII 238          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_HYPNA (Serine hydroxymethyltransferase OS=Hyphomonas neptunium (strain ATCC 15444) GN=glyA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.409e-17
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR  D+ RFR +AD  GA+ L DMAH +GLVA     NP ++CHI TTTTHK+LRGPR GMI
Sbjct:  190 YPRQIDFKRFREIADDVGAIFLVDMAHFAGLVAGGAHPNPLDHCHIATTTTHKTLRGPRGGMI 252          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_HYPME (Serine hydroxymethyltransferase OS=Hyphomicrobium methylovorum GN=glyA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.409e-17
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR  D+A FRA+AD+ GA+ L DMAH +GLVAA    +PF + H+VTTTTHK+LRGPR GMI
Sbjct:  190 YPRKIDFAAFRAIADEVGAIFLVDMAHFAGLVAAGLIPSPFPHAHVVTTTTHKTLRGPRGGMI 252          
The following BLAST results are available for this feature:
BLAST of CX288913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_HELPH1.845e-1758.73Serine hydroxymethyltransferase OS=Helicobacter py... [more]
GLYA_CYTH31.845e-1760.32Serine hydroxymethyltransferase OS=Cytophaga hutch... [more]
GLYA_BEII91.845e-1758.73Serine hydroxymethyltransferase OS=Beijerinckia in... [more]
GLYA_SYNPX2.409e-1762.12Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_SPHWW2.409e-1763.49Serine hydroxymethyltransferase OS=Sphingomonas wi... [more]
GLYA_RICTY2.409e-1761.90Serine hydroxymethyltransferase OS=Rickettsia typh... [more]
GLYA_PHEZH2.409e-1760.32Serine hydroxymethyltransferase OS=Phenylobacteriu... [more]
GLYA_MOOTA2.409e-1765.08Serine hydroxymethyltransferase OS=Moorella thermo... [more]
GLYA_HYPNA2.409e-1761.90Serine hydroxymethyltransferase OS=Hyphomonas nept... [more]
GLYA_HYPME2.409e-1763.49Serine hydroxymethyltransferase OS=Hyphomicrobium ... [more]

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Properties
Property NameValue
Genbank descriptionC02006H02SK IF1 Citrus clementina cDNA clone C02006H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288913 ID=CX288913; Name=CX288913; organism=Citrus clementina; type=EST; length=271bp
TATCCGAGGGACTGGGATTATGCTAGATTCAGAGCTGTTGCTGATAAGTG
TGGTGCCCTTTTGCTCTGTGATATGGCTCATATCAGTGGCCTTGTTGCTG
CTCAGGAAGCTGCAAACCCCTTTGAGTACTGTCACATAGTCACAACCACT
ACTCACAAGAGCTTGCGGGGTCCTAGGGCTGGTATGATCTTCTACCGGAA
GGGTCCTAAACCACCCAAGAAGGGCCAACCAGAGGGTGCGGTAAAAGACT
TTGAAGACAATAACAACTTTG
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