CX288913

Overview
NameCX288913
Unique NameCX288913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length271
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_HELPY (Serine hydroxymethyltransferase OS=Helicobacter pylori GN=glyA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.409e-17
Identity = 37/63 (58.73%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR+ D+ +FR +AD+ GALLL D+AH++GLV   E A+PF +CH+V++TTHK+LRGPR G+I
Sbjct:  174 YPREIDFKKFREIADEVGALLLGDIAHVAGLVVTGEHAHPFPHCHVVSSTTHKTLRGPRGGII 236          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_EHRCJ (Serine hydroxymethyltransferase OS=Ehrlichia canis (strain Jake) GN=glyA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.409e-17
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR  D+ RFR +ADK GA LL D+AH +GL+AA E  +PFEY H+VT+TTHK+LRGPR  +I
Sbjct:  180 YPRTIDFKRFREIADKVGAYLLADIAHYAGLIAAGEFPSPFEYAHVVTSTTHKTLRGPRGAVI 242          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_SYNSC (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain CC9605) GN=glyA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.147e-17
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            YPR  D+A FRA+AD+ GA LL DMAHI+GLVAA    +P  +C +VTTTTHK+LRGPR G+I  R
Sbjct:  183 YPRTIDFAAFRAIADEVGAYLLADMAHIAGLVAAGVHPSPVPHCDVVTTTTHKTLRGPRGGLILCR 248          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_SYNPW (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain WH7803) GN=glyA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.147e-17
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            YPR  D+A FRA+AD+ GA LL DMAHI+GLVAA    +P  +C +VTTTTHK+LRGPR G+I  R
Sbjct:  183 YPRTIDFAAFRAIADEVGAYLLADMAHIAGLVAAGVHPSPVPHCDVVTTTTHKTLRGPRGGLILCR 248          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_METPB (Serine hydroxymethyltransferase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=glyA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.147e-17
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR WD+A+FR +AD  GA    DMAH +GLVAA    +PF + H+ TTTTHK+LRGPR GMI
Sbjct:  190 YPRHWDFAKFREIADSVGAYFFVDMAHFAGLVAAGLHPSPFPHAHVATTTTHKTLRGPRGGMI 252          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_METEP (Serine hydroxymethyltransferase OS=Methylobacterium extorquens (strain PA1) GN=glyA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.147e-17
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR WD+A+FR +AD  GA    DMAH +GLVAA    +PF + H+ TTTTHK+LRGPR GMI
Sbjct:  190 YPRHWDFAKFREIADSVGAYFFVDMAHFAGLVAAGLHPSPFPHAHVATTTTHKTLRGPRGGMI 252          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_METEA (Serine hydroxymethyltransferase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=glyA PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.147e-17
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR WD+A+FR +AD  GA    DMAH +GLVAA    +PF + H+ TTTTHK+LRGPR GMI
Sbjct:  190 YPRHWDFAKFREIADSVGAYFFVDMAHFAGLVAAGLHPSPFPHAHVATTTTHKTLRGPRGGMI 252          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_METC4 (Serine hydroxymethyltransferase OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=glyA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.147e-17
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR WD+A+FR +AD  GA    DMAH +GLVAA    +PF + H+ TTTTHK+LRGPR GMI
Sbjct:  190 YPRHWDFAKFREIADSVGAYFFVDMAHFAGLVAAGLHPSPFPHAHVATTTTHKTLRGPRGGMI 252          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_GEOKA (Serine hydroxymethyltransferase OS=Geobacillus kaustophilus GN=glyA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.147e-17
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMI 189
            YPR  D+A+FR +AD+ GA L+ DMAHI+GLVAA    NP  Y H VTTTTHK+LRGPR GMI
Sbjct:  174 YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGVHPNPVPYAHFVTTTTHKTLRGPRGGMI 236          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYA_BRASB (Serine hydroxymethyltransferase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=glyA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.147e-17
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFY 195
            Y R WD+ RFR +AD  GA LL DMAH +GLVA    A+P  + HIVTTTTHKSLRGPR G+I +
Sbjct:  190 YSRPWDFKRFREIADHVGAYLLVDMAHFAGLVAGGAHASPVPHAHIVTTTTHKSLRGPRGGLILW 254          
The following BLAST results are available for this feature:
BLAST of CX288913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_HELPY2.409e-1758.73Serine hydroxymethyltransferase OS=Helicobacter py... [more]
GLYA_EHRCJ2.409e-1761.90Serine hydroxymethyltransferase OS=Ehrlichia canis... [more]
GLYA_SYNSC3.147e-1762.12Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_SYNPW3.147e-1762.12Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_METPB3.147e-1760.32Serine hydroxymethyltransferase OS=Methylobacteriu... [more]
GLYA_METEP3.147e-1760.32Serine hydroxymethyltransferase OS=Methylobacteriu... [more]
GLYA_METEA3.147e-1760.32Serine hydroxymethyltransferase OS=Methylobacteriu... [more]
GLYA_METC43.147e-1760.32Serine hydroxymethyltransferase OS=Methylobacteriu... [more]
GLYA_GEOKA3.147e-1765.08Serine hydroxymethyltransferase OS=Geobacillus kau... [more]
GLYA_BRASB3.147e-1761.54Serine hydroxymethyltransferase OS=Bradyrhizobium ... [more]

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Properties
Property NameValue
Genbank descriptionC02006H02SK IF1 Citrus clementina cDNA clone C02006H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288913 ID=CX288913; Name=CX288913; organism=Citrus clementina; type=EST; length=271bp
TATCCGAGGGACTGGGATTATGCTAGATTCAGAGCTGTTGCTGATAAGTG
TGGTGCCCTTTTGCTCTGTGATATGGCTCATATCAGTGGCCTTGTTGCTG
CTCAGGAAGCTGCAAACCCCTTTGAGTACTGTCACATAGTCACAACCACT
ACTCACAAGAGCTTGCGGGGTCCTAGGGCTGGTATGATCTTCTACCGGAA
GGGTCCTAAACCACCCAAGAAGGGCCAACCAGAGGGTGCGGTAAAAGACT
TTGAAGACAATAACAACTTTG
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